NO14G00110.1, NO14G00110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00110.1
Unique NameNO14G00110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1025
Alignment locationchr14:33084..35056 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:33084..35056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00110.1 vs.
Match: EWM24786.1 (glycoprotein fp21 [Nannochloropsis gaditana])

HSP 1 Score: 215.3 bits (547), Expect = 1.700e-52
Identity = 114/162 (70.37%), Postives = 139/162 (85.80%), Query Frame = 0 
Query:    1 MNVRIILKNGQELDAAVDAALLLPSSLLAGMLDDEEEELRGEEEERMLTLPTVEKATFENVLRFLRLHAHARMHDIPKPITQSSLGEVVQEEYSDYIQSLSYRDLIQVLELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDLTPEEEADLRKEY 163
            MNVRI+LKNGQELDA V+AALLLPS+LLAGML+ EE+     E+ER L LP+VEK  FE V+RFLR+HA   + DIPKPI ++SLGE+VQ+EYS++I+SL YRDL+QV+ELAHFLVL+PLLRL+LAR+HF+LKATPLEEFKRLFLFQNDLT EEE   R+ +
Sbjct:    1 MNVRIVLKNGQELDAPVEAALLLPSTLLAGMLEAEED---CGEDERTLELPSVEKTAFEYVMRFLRVHAATPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETH 159
The following BLAST results are available for this feature:
BLAST of NO14G00110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24786.11.700e-5270.37glycoprotein fp21 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00110NO14G00110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00110.1NO14G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00110.1.cds1NO14G00110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00110.1.cds2NO14G00110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00110.1.cds3NO14G00110.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00110.1.cds4NO14G00110.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00110.1.cds5NO14G00110.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00110.1 ID=NO14G00110.1|Name=NO14G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp
AACAGAATATGAATGTTCGCATCATCTTGAAAAATGGACAGGAACTGGAC
GCCGCGGTTGACGCAGCCTTGCTCCTGCCCTCGAGCCTTCTAGCCGGCAT
GCTCGACGACGAGGAAGAGGAACTTCGGGGCGAAGAGGAAGAGCGCATGC
TCACCCTCCCTACTGTCGAGAAGGCGACCTTTGAAAACGTCTTGCGCTTC
CTGCGCCTTCACGCCCATGCCCGCATGCACGACATCCCCAAGCCCATCAC
CCAATCGAGTCTTGGCGAGGTAGTGCAAGAAGAATATAGCGACTACATCC
AATCACTCTCCTACAGAGACCTCATTCAGGTGCTGGAACTCGCTCACTTT
CTGGTGCTGGAGCCCCTTCTCCGCTTGGCCCTCGCCCGCCTTCACTTTGT
GCTAAAAGCGACCCCGCTGGAGGAGTTCAAGCGCTTGTTCCTCTTCCAGA
ACGACTTGACGCCGGAGGAAGAAGCGGACCTTCGCAAGGAGTATCTGGAA
GAGATCAAGCTCCGCAACGCCTTCTCGTTCAAGGCGGCGCAGGAGCAGCA
AGAGGGAGGAGGAGGAGGGGGAGGAGGGGAGGCGAGCACGGCGCAGCCCT
AGAGGTAGCCTTGGGCGTAGAGAGAGGGCGGGGGAGAGGGGGGAGTGAAA
GAAGGGATGTACAGAAGGCGGGACCGAGGACGGGACCGAGGACGGGACCG
CGGACGGGACCGAGGACGGGACCGAGGACGGGGGGGCATTGGCGAGTGTG
AGCACACCGAGAGGATGCCTGCGGTGAACTTTGTTGATTGGATTGAGGAT
GGAAAGTCGTCGAAGATGGACGGATGAGAGGCAAAGGGTGTGAAGGACCA
GGTGGAGGGAGAGAGAAAGAAAGAGAGAGCCGAGGACACACACACAGATA
GAAGGAGAAGAAATAATAGCAGGAGAGGAGGAGGAAGAAGGAGAAGTAGA
AGAGGAAGGAGGGGAAGAAGTAGTTCAAGATCAAGAAGAAAAGAAGAAAT
GAGAGGAATAGGACTTCTTTCATGA
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protein sequence of NO14G00110.1

>NO14G00110.1-protein ID=NO14G00110.1-protein|Name=NO14G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MNVRIILKNGQELDAAVDAALLLPSSLLAGMLDDEEEELRGEEEERMLTL
PTVEKATFENVLRFLRLHAHARMHDIPKPITQSSLGEVVQEEYSDYIQSL
SYRDLIQVLELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDL
TPEEEADLRKEYLEEIKLRNAFSFKAAQEQQEGGGGGGGGEASTAQP*
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mRNA from alignment at chr14:33084..35056-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00110.1 ID=NO14G00110.1|Name=NO14G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1973bp|location=Sequence derived from alignment at chr14:33084..35056- (Nannochloropsis oceanica)
AACAGAATATGAATGTTCGCATCATCTTGAAAAATGGACAGGAACTGGAC
GCCGCGGTTGACGCAGCCTTGCTCCTGCCCTCGAGCCTTCTAGCCGGCAT
GCTCGACGACGAGGAAGAGGAACTTCGGGGTAAGTGAGGGACGGATGGAA
ATGAGGTGCAAAAAAGCAATAAATGGGTAAGGTGTATCTAGAAATGTGGC
TGTATTCTCCCGTCGATAGCACTCCTACTAAGGGTAGGCGCCGCTCTGGT
CCGTTTTATATGTGCGCGCCGATCGAGAGGCATGGTGACATGCTATACGC
TCATTTATACACCCCAAGAGCTTTACTGCACATTTATCCTGCGCATGTCT
GTGAGGCTAAAGATTTCTGCTTTTGCTCATACATCTCCCACAGGCGAAGA
GGAAGAGCGCATGCTCACCCTCCCTACTGTCGAGAAGGCGACCTTTGAAA
ACGTCTTGCGCTTCCTGCGCCTTCACGCCCATGCCCGCATGCACGACATC
CCCAAGGTAGGTAGGAGACACACAGAGGCTTCAACACGAAGGAAAGAAAA
AGAAGGAGGGGGCGGGAGAAAAGTGCTTGTTATGTAGTCGGATGAGGCGG
AGGAGGGACTGTCGGGTTCAAGAGAGACAGGGGAGGGATAAGCTGGATGC
CCTCGTGCAGGAGTTTATGAGATGCCTGGAGGAATTGACTCATGGGAAAG
AAAAAAAAGGAAAAGGGAGCGGAAAATAGCATGGAGGTGGACGAAGAGCA
TGAGGAAAATGAGGAGGATGAGAGCAGAAGAAAAAGAGGAAAGACGATGC
ATAATCGCAGGCGCATTTCCTCGTGATGAATGAGGCGCTCACATCCCCTC
CAATACCTCCTTCTCCTCTTCCTCTCCTCCTCCAGCCCATCACCCAATCG
AGTCTTGGCGAGGTAGTGCAAGAAGAATATAGCGACTACATCCAATCACT
CTCCTACAGAGACCTCATTCAGGTACGTAGGCGGTGCTTTTCCCTCCTTT
CTCCCTCCTCCCTCAAGCCCTCCCTTCCCCTTCCAGGTGCTGGAACTCGC
TCACTTTCTGGTGCTGGAGCCCCTTCTCCGCTTGGCCCTCGCCCGCCTTC
ACTTTGTGCTAAAAGCGACCCCGCTGGAGGAGTTCAAGCGCTTGTTCCTC
TTCCAGAACGACTTGACGCCGGAGGAAGAAGCGGTAGGGAGGGAGGGAGG
GAGGGAGGGAAGAAGGGTGAATGGGGGTGAGTATAAGGCGTCCAACGCGG
CCGTAGTTTGGACGGAGAAAAGAGATGAACGAGGTGAATAAGGGGGGAGG
GAGGGAAGAGAGGGAGGGAAGGGATGGAGGGAGGGGGAGTCTGACCCAGG
GATGAAAAGAGAACCCGACGCTGACAACCCCTCTCCTCTCCCTCCCTGCC
TTCCTCCTTCCGCCCCTCCCTCAGGACCTTCGCAAGGAGTATCTGGAAGA
GATCAAGCTCCGCAACGCCTTCTCGTTCAAGGCGGCGCAGGAGCAGCAAG
AGGGAGGAGGAGGAGGGGGAGGAGGGGAGGCGAGCACGGCGCAGCCCTAG
AGGTAGCCTTGGGCGTAGAGAGAGGGCGGGGGAGAGGGGGGAGTGAAAGA
AGGGATGTACAGAAGGCGGGACCGAGGACGGGACCGAGGACGGGACCGCG
GACGGGACCGAGGACGGGACCGAGGACGGGGGGGCATTGGCGAGTGTGAG
CACACCGAGAGGATGCCTGCGGTGAACTTTGTTGATTGGATTGAGGATGG
AAAGTCGTCGAAGATGGACGGATGAGAGGCAAAGGGTGTGAAGGACCAGG
TGGAGGGAGAGAGAAAGAAAGAGAGAGCCGAGGACACACACACAGATAGA
AGGAGAAGAAATAATAGCAGGAGAGGAGGAGGAAGAAGGAGAAGTAGAAG
AGGAAGGAGGGGAAGAAGTAGTTCAAGATCAAGAAGAAAAGAAGAAATGA
GAGGAATAGGACTTCTTTCATGA
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Coding sequence (CDS) from alignment at chr14:33084..35056-

>NO14G00110.1 ID=NO14G00110.1|Name=NO14G00110.1|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr14:33084..35056- (Nannochloropsis oceanica)
ATGAATGTTCGCATCATCTTGAAAAATGGACAGGAACTGGACGCCGCGGT
TGACGCAGCCTTGCTCCTGCCCTCGAGCCTTCTAGCCGGCATGCTCGACG
ACGAGGAAGAGGAACTTCGGGGCGAAGAGGAAGAGCGCATGCTCACCCTC
CCTACTGTCGAGAAGGCGACCTTTGAAAACGTCTTGCGCTTCCTGCGCCT
TCACGCCCATGCCCGCATGCACGACATCCCCAAGCCCATCACCCAATCGA
GTCTTGGCGAGGTAGTGCAAGAAGAATATAGCGACTACATCCAATCACTC
TCCTACAGAGACCTCATTCAGGTGCTGGAACTCGCTCACTTTCTGGTGCT
GGAGCCCCTTCTCCGCTTGGCCCTCGCCCGCCTTCACTTTGTGCTAAAAG
CGACCCCGCTGGAGGAGTTCAAGCGCTTGTTCCTCTTCCAGAACGACTTG
ACGCCGGAGGAAGAAGCGGACCTTCGCAAGGAGTATCTGGAAGAGATCAA
GCTCCGCAACGCCTTCTCGTTCAAGGCGGCGCAGGAGCAGCAAGAGGGAG
GAGGAGGAGGGGGAGGAGGGGAGGCGAGCACGGCGCAGCCCTAG
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Synonyms
Publications