NO13G03190, NO13G03190 (gene) Nannochloropsis oceanica

Overview
NameNO13G03190
Unique NameNO13G03190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1763
Alignment locationchr13:929829..931591 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:929829..931591 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO13G03190 vs. NCBI_GenBank
Match: CCX16455.1 (Similar to Uncharacterized protein yisB; acc. no. O06715 [Pyronema omphalodes CBS 100304])

HSP 1 Score: 93.6 bits (231), Expect = 9.500e-16
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 0
Query:  153 CELCARVMPLTRHHLRPRTLHKKLLKQGISQE-ELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQR 237
            CE+C R++PLT HHL PR +HKK+LK+G  QE ELN  A +CRPCH+ VHR   N+ LA   +TV  LLE E +GK+  +  KQR
Sbjct:  124 CEICERMVPLTYHHLIPREVHKKVLKRGWHQEWELNKVAWLCRPCHSTVHRVATNEELAKEWFTVEKLLEREDIGKWRSYVGKQR 208          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: PPQ99615.1 (hypothetical protein CVT24_005193 [Panaeolus cyanescens])

HSP 1 Score: 93.6 bits (231), Expect = 9.500e-16
Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 0
Query:  111 DEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLLKQGISQEE-LNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQR 237
            DEDD++  + K+ S  +     PP       V    R  +  CE+C R +PLT HHL PR+ H K+LK+G   EE LN  A +CR CH+AVH    N+ LA   YTV  LLE E + K+ ++A+KQR
Sbjct:  139 DEDDVQKFIHKVVSTYIDSATAPPP------VWKATRTEE--CEICERQVPLTYHHLIPRSTHDKVLKKGWHPEEMLNSVAWLCRQCHSAVHHVAPNEELARNFYTVELLLEREDIQKWKKYAAKQR 257          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: OSD02233.1 (hypothetical protein PYCCODRAFT_1477803 [Trametes coccinea BRFM310])

HSP 1 Score: 93.2 bits (230), Expect = 1.200e-15
Identity = 59/169 (34.91%), Postives = 86/169 (50.89%), Query Frame = 0
Query:   73 LSTLISELEAEQILSIEDLFGVIQNYVPENLLRALA----VEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLLKQGISQEE-LNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQR 237
            L   + E   E   S+ D+  +    +P +    LA    VEDE+     + ++    + E   PP            +   K CE+C R +PLT HHL PR +H K+ K+    +  LN  A +CRPCH+AVH + DN+TLA   YTV  LLE E + K+ ++A+KQR
Sbjct:   59 LPPAVREATYEDRTSVPDVDDLPLENIPTSFADTLASYGLVEDEESAIAFLRRVLQDYVAEACAPPPV--------WSKTRTKECEICEREVPLTYHHLIPREVHDKVRKKKWHPDSMLNSVAWLCRPCHSAVHHAADNETLAREFYTVDRLLEREDIQKWRKYAAKQR 219          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: PTQ28797.1 (hypothetical protein MARPO_0154s0023 [Marchantia polymorpha])

HSP 1 Score: 93.2 bits (230), Expect = 1.200e-15
Identity = 47/101 (46.53%), Postives = 71/101 (70.30%), Query Frame = 0
Query:  153 CELCARVMPLTRHHLRPRTLHKKLLKQGI-SQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQQLRYQR 253
            C +C R MPLT HHL PR LHK +LK+G+ +++ +N    ICRPCH+A+H+  D++T+A  + T+  +LEDE+V ++VR+A KQR    +D   + LRY+R
Sbjct:  154 CVMCLRYMPLTFHHLCPRMLHKGMLKKGMYTKQNINDGIDICRPCHSAIHKLFDHETMALKVNTLEKILEDERVQRWVRYAEKQR-VVSKDHTIRGLRYRR 253          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: PTQ28796.1 (hypothetical protein MARPO_0154s0023 [Marchantia polymorpha])

HSP 1 Score: 93.2 bits (230), Expect = 1.200e-15
Identity = 47/101 (46.53%), Postives = 71/101 (70.30%), Query Frame = 0
Query:  153 CELCARVMPLTRHHLRPRTLHKKLLKQGI-SQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQQLRYQR 253
            C +C R MPLT HHL PR LHK +LK+G+ +++ +N    ICRPCH+A+H+  D++T+A  + T+  +LEDE+V ++VR+A KQR    +D   + LRY+R
Sbjct:  131 CVMCLRYMPLTFHHLCPRMLHKGMLKKGMYTKQNINDGIDICRPCHSAIHKLFDHETMALKVNTLEKILEDERVQRWVRYAEKQR-VVSKDHTIRGLRYRR 230          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: CCA74432.1 (hypothetical protein PIIN_08385 [Serendipita indica DSM 11827])

HSP 1 Score: 92.4 bits (228), Expect = 2.100e-15
Identity = 59/163 (36.20%), Postives = 88/163 (53.99%), Query Frame = 0
Query:   78 SELEAEQILSIEDLFGVIQNYVPENLLRALAVEDEDDME---VLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLLKQGISQEE-LNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQR 237
            S++E  Q+ SI      +     E+L+    VE E D E     + K ++  L   V   +E       G +    + CE+C R +PLT HHL PR+ H K+L++     E LN+ A +CRPCHTAVHRS  N+ LA   Y+V  L+E E + ++ ++AS+QR
Sbjct:   82 SQVEKLQLASIP-----VPPAFAESLVTYSLVESEGDAEDAFQSIMKAFTEELSSLVTEAREASLPPKHGWKSTRCENCEICHRDVPLTYHHLIPRSTHDKVLRRKWHPPEMLNVVAWLCRPCHTAVHRSAPNEDLARYYYSVELLMERESIQRWAQYASRQR 239          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: EME39994.1 (hypothetical protein DOTSEDRAFT_158617 [Dothistroma septosporum NZE10])

HSP 1 Score: 92.4 bits (228), Expect = 2.100e-15
Identity = 58/155 (37.42%), Postives = 83/155 (53.55%), Query Frame = 0
Query:   88 IEDLFGVIQNYVPENLLRALAVEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARV-MPLTRHHLRPRTLHKKLLKQGISQE-ELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQ 241
            IE L   +   VPE+L     + DE D++  +    +  +     PP   E    +   R G  GCE+C R  +PLT HHL PR +H K++K+G  +E ELN  A +CR CH+ VHR   N+ LA  LY+V  LLE E + +F +W    R +A+
Sbjct:  109 IESLIKPLPLSVPESLTTYGLINDESDLDHFLEPCINSYITTTSEPPA--EYTPALTATRPG--GCEICDREHVPLTYHHLIPRQVHAKVVKRGWHKEWELNKVAWLCRACHSYVHRVAPNEQLARELYSVDLLLEREDIQRFAKWVGTVRWKAR 259          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: XP_008605317.1 (hypothetical protein SDRG_01562 [Saprolegnia diclina VS20] >EQC41603.1 hypothetical protein SDRG_01562 [Saprolegnia diclina VS20])

HSP 1 Score: 91.3 bits (225), Expect = 4.700e-15
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 0
Query:  152 GCELCARVMPLTRHHLRPRTLHKKLLKQGISQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQ 247
            GCELC R M LT HHL PR  H K L++G S+E LN    ICR CH+ +H + DN  LA+   T+  LL  E + ++V++A KQ+ R +  G  Q
Sbjct:  183 GCELCERAMNLTAHHLVPRQCHAKFLQRGFSREYLNRTILICRQCHSKIHATEDNKVLASEFNTLEKLLAHEAIARYVQYARKQKTRVRPRGQKQ 277          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: PPQ95432.1 (hypothetical protein CVT26_008453 [Gymnopilus dilepis])

HSP 1 Score: 91.3 bits (225), Expect = 4.700e-15
Identity = 69/206 (33.50%), Postives = 103/206 (50.00%), Query Frame = 0
Query:   51 LLLSSISSTSDSGTSMAA----VDYFLSTLISELEAEQILSIEDLFGVIQNYVP---------------ENLLRALAVEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLLKQGISQEE-LNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQR 237
            L  S+ S     GT   A    +D F S + SE      L++++     ++ VP               ++L+    V DEDD  + + K  S  L++   PP        +    R D+ C +C+R +PLT HHL PR++H K+LK+G   +  LN  A +CRPCH+ VHR   N+ LA   +TV  LLE E + K+ ++ASKQR
Sbjct:   19 LFRSTTSEKDKEGTGDQADTDGLDEFASYIASEAWPTLPLAVKEATHETRDTVPDADTIPLESTSTSFSDSLVSYGLVPDEDDALIFLRKAVSDFLEQACAPPP-------VWSSTRADE-CAICSREVPLTYHHLIPRSVHDKVLKKGWHPKAMLNKVAWLCRPCHSFVHRVASNEDLAQHYHTVDLLLEREDIQKWQKYASKQR 216          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: KZW00266.1 (hypothetical protein EXIGLDRAFT_639669 [Exidia glandulosa HHB12029])

HSP 1 Score: 90.9 bits (224), Expect = 6.100e-15
Identity = 53/149 (35.57%), Postives = 76/149 (51.01%), Query Frame = 0
Query:   89 EDLFGVIQNYVPENLLRALAVEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLLKQG-ISQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQR 237
            +D+F        + L+    V+D DD   L+       L+E    P   ++  +          CE+C R +PLT HHL PR++H K+LK+G   QE LN  A +CR CH+ VHR   N+ LA   YTV  LL  E + ++  WA +QR
Sbjct:   65 DDVFDATPLQFSDTLVAYGIVDDRDDALKLLRNAIDTYLQEACAAPPVGKQTRL--------AECEICEREIPLTYHHLIPRSVHNKVLKRGWHPQERLNAVAWLCRYCHSTVHRLASNEDLARYFYTVDLLLAREDIQRWRAWAGRQR 205          
The following BLAST results are available for this feature:
BLAST of NO13G03190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CCX16455.19.500e-1654.12Similar to Uncharacterized protein yisB; acc. no. ... [more]
PPQ99615.19.500e-1642.52hypothetical protein CVT24_005193 [Panaeolus cyane... [more]
OSD02233.11.200e-1534.91hypothetical protein PYCCODRAFT_1477803 [Trametes ... [more]
PTQ28797.11.200e-1546.53hypothetical protein MARPO_0154s0023 [Marchantia p... [more]
PTQ28796.11.200e-1546.53hypothetical protein MARPO_0154s0023 [Marchantia p... [more]
CCA74432.12.100e-1536.20hypothetical protein PIIN_08385 [Serendipita indic... [more]
EME39994.12.100e-1537.42hypothetical protein DOTSEDRAFT_158617 [Dothistrom... [more]
XP_008605317.14.700e-1545.26hypothetical protein SDRG_01562 [Saprolegnia dicli... [more]
PPQ95432.14.700e-1533.50hypothetical protein CVT26_008453 [Gymnopilus dile... [more]
KZW00266.16.100e-1535.57hypothetical protein EXIGLDRAFT_639669 [Exidia gla... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL130nonsL130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR096ngnoR096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007630NSK007630Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03190.1NO13G03190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604768gene_8982Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100249g8gene9665Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03190.1NO13G03190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03190 ID=NO13G03190|Name=NO13G03190|organism=Nannochloropsis oceanica|type=gene|length=1763bp
ATGAATAGGAAGATCAAACAGCGCCAACAGCAACAACCGGCACCAAAAGT
CAGAGATGACGACGGTGGGGAAGAGGATGAGCTCGATGAGCTCGCTGCCG
gtaagcacacatacccctcttctttcctacaacaaggagagacaaagcac
agtggtgccatcgtctcgcttaacaggacaccaggtcctcttccgagaaa
tcgtagcagcagcaacgtaacatcaacatgaaagttaatctcgacctctc
gcgtttatcctacccttgcactcagCAACAACCTTGCTGGCAAGGCTCGA
TCTAGCCGAGCACAAGCTACGCCTCCTGCTGTTGTCCTCCATTTCTTCGA
CGTCGGACAGCGGTACCTCGgtgcgtgccgatacgcgtgccttcatccct
ttaacttttcaccacagcacttaccgcattccttctctctaaggctcgaa
tcagtctcgcgacttctcatccgcgtcatgcccacccacattcacgcagA
TGGCAGCAGTTGACTACTTCCTTTCCACACTCATCTCGGAATTAGAAGCC
GAACAAATTCTTTCCATCGAGGACTTGTTTGGCGTCATCCAGgtaagatt
aaaaatacatatgtatatctatatacatatatttctgtacatatatttct
ctctatgtacaacgtattattctttcatgtttgcactgtagtagaagtac
cgacaggagagtttctacacaccttggtgaataagatacaaccaaagaga
taagataagtgaagctaagaaaacttatgcgtgtgcattccttactcact
acaacacacattagAATTACGTACCTGAAAATTTGCTGCGCGCGTTGGCC
GTGGAAGATGAGGACGACATGGAGgtaaatgaatcgatatcttggcgtgc
atgtcggtcgttcaatctttgctgtcgatcgtaaattcctttcgcttttc
agcttccaattttttaaataaaaatagatttaccctatatttgaagtatt
tccctcgagggtttacgtactccgggtaatatgcctgattttcaactgca
tattttctcctttttctgccgatacgcctgatttggaatgttataaatta
ccgatcctgatcgatggcatttttttctttttttccttgtctttgtctcg
gttttaaccttcagGTTCTAGTGAGCAAGCTCTGGTCCCGCCTTCTCAAA
GAAAATGTGATTCCACCTCAAGAAGACGAGGAGGTGGGAGTCATGGGGTT
GGAAAGAAGGGGGGACAAGGGTTGTGAGTTGTGTGCCCGTGTAATGCCCT
TGACGCGGCACCATCTCCGGCCTCGGACACTGCATAAAAAGCTGCTTAAG
CAGgtaagcgagggcaagcggggtgacctgttgaccgtattgcaaaggtg
gtatgagtgaggctgctgcttgattctcacctccacccggacatatgtcg
tgtttttcacagGGGATCTCACAAGAGGAGCTGAATATATGTGCTACAAT
CTGCAGgtgagtcaatagatgacggtatgctttcatctcattccttcact
gatctcctactgtcctgccttatccttcatccaagGCCCTGCCACACGGC
TGTGCACCGAAGCCACGACAACGACACACTGGCCACATTGCTATACACCG
TTCCTGCGTTGTTAGAGGACGAAAAAGTTGGCAAATTTGTGCGATGGGCG
AGCAAGCAACGAGGACGGGCGCAACAGGATGGTCACAACCAACAGCTTCG
CTATCAACGCTAA
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protein sequence of NO13G03190.1

>NO13G03190.1-protein ID=NO13G03190.1-protein|Name=NO13G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MNRKIKQRQQQQPAPKVRDDDGGEEDELDELAAATTLLARLDLAEHKLRL
LLLSSISSTSDSGTSMAAVDYFLSTLISELEAEQILSIEDLFGVIQNYVP
ENLLRALAVEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGD
KGCELCARVMPLTRHHLRPRTLHKKLLKQGISQEELNICATICRPCHTAV
HRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQQLRY
QR*
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Synonyms
Publications