NO13G03190.1, NO13G03190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03190.1
Unique NameNO13G03190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length759
Alignment locationchr13:929829..931591 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:929829..931591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G03190.1 vs.
Match: EWM20742.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 258.8 bits (660), Expect = 1.700e-65
Identity = 138/227 (60.79%), Postives = 170/227 (74.89%), Query Frame = 0 
Query:   26 DELDELAAATTLLARLDLAEHKLRLLLLSSISSTSDSGTSMAAVDYFLSTLISELEAEQILSIEDLFGVIQNYVPENLLRALAVEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLLKQGISQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQQLRYQR 253
            D+ ++L  AT L  +L + + KLR+L+ S +SS+S +    A V+Y  STLISELEAE I+SIED+F VIQ +VPE +L +L +EDEDD+E+ VSK+W  L KE VI    D+EV  M  E     GCELC R MPLTRHHLRPR +HK LLKQG+SQ+ELNICA ICRPCH+AVHR++DN+TLA   YTV ALL DEK+GKFVRWASKQRGR Q+ GHN  L+YQR
Sbjct:    5 DDHEDLTGATGLPRQLKVLDCKLRVLMDSCLSSSSQT----ADVEYVHSTLISELEAEHIVSIEDVFSVIQTFVPEEMLLSLGIEDEDDIELFVSKVWLLLQKERVIQETTDDEVMSMSRE----SGCELCERAMPLTRHHLRPRAMHKILLKQGMSQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQRGREQKMGHNPLLKYQR 223
The following BLAST results are available for this feature:
BLAST of NO13G03190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20742.11.700e-6560.79conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03190NO13G03190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03190.1NO13G03190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03190.1.cds1NO13G03190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03190.1.cds2NO13G03190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03190.1.cds3NO13G03190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03190.1.cds4NO13G03190.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03190.1.cds5NO13G03190.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03190.1.cds6NO13G03190.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03190.1.cds7NO13G03190.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03190.1 ID=NO13G03190.1|Name=NO13G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=759bp
ATGAATAGGAAGATCAAACAGCGCCAACAGCAACAACCGGCACCAAAAGT
CAGAGATGACGACGGTGGGGAAGAGGATGAGCTCGATGAGCTCGCTGCCG
CAACAACCTTGCTGGCAAGGCTCGATCTAGCCGAGCACAAGCTACGCCTC
CTGCTGTTGTCCTCCATTTCTTCGACGTCGGACAGCGGTACCTCGATGGC
AGCAGTTGACTACTTCCTTTCCACACTCATCTCGGAATTAGAAGCCGAAC
AAATTCTTTCCATCGAGGACTTGTTTGGCGTCATCCAGAATTACGTACCT
GAAAATTTGCTGCGCGCGTTGGCCGTGGAAGATGAGGACGACATGGAGGT
TCTAGTGAGCAAGCTCTGGTCCCGCCTTCTCAAAGAAAATGTGATTCCAC
CTCAAGAAGACGAGGAGGTGGGAGTCATGGGGTTGGAAAGAAGGGGGGAC
AAGGGTTGTGAGTTGTGTGCCCGTGTAATGCCCTTGACGCGGCACCATCT
CCGGCCTCGGACACTGCATAAAAAGCTGCTTAAGCAGGGGATCTCACAAG
AGGAGCTGAATATATGTGCTACAATCTGCAGGCCCTGCCACACGGCTGTG
CACCGAAGCCACGACAACGACACACTGGCCACATTGCTATACACCGTTCC
TGCGTTGTTAGAGGACGAAAAAGTTGGCAAATTTGTGCGATGGGCGAGCA
AGCAACGAGGACGGGCGCAACAGGATGGTCACAACCAACAGCTTCGCTAT
CAACGCTAA
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protein sequence of NO13G03190.1

>NO13G03190.1-protein ID=NO13G03190.1-protein|Name=NO13G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MNRKIKQRQQQQPAPKVRDDDGGEEDELDELAAATTLLARLDLAEHKLRL
LLLSSISSTSDSGTSMAAVDYFLSTLISELEAEQILSIEDLFGVIQNYVP
ENLLRALAVEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGD
KGCELCARVMPLTRHHLRPRTLHKKLLKQGISQEELNICATICRPCHTAV
HRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQQLRY
QR*
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mRNA from alignment at chr13:929829..931591+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03190.1 ID=NO13G03190.1|Name=NO13G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp|location=Sequence derived from alignment at chr13:929829..931591+ (Nannochloropsis oceanica)
ATGAATAGGAAGATCAAACAGCGCCAACAGCAACAACCGGCACCAAAAGT
CAGAGATGACGACGGTGGGGAAGAGGATGAGCTCGATGAGCTCGCTGCCG
GTAAGCACACATACCCCTCTTCTTTCCTACAACAAGGAGAGACAAAGCAC
AGTGGTGCCATCGTCTCGCTTAACAGGACACCAGGTCCTCTTCCGAGAAA
TCGTAGCAGCAGCAACGTAACATCAACATGAAAGTTAATCTCGACCTCTC
GCGTTTATCCTACCCTTGCACTCAGCAACAACCTTGCTGGCAAGGCTCGA
TCTAGCCGAGCACAAGCTACGCCTCCTGCTGTTGTCCTCCATTTCTTCGA
CGTCGGACAGCGGTACCTCGGTGCGTGCCGATACGCGTGCCTTCATCCCT
TTAACTTTTCACCACAGCACTTACCGCATTCCTTCTCTCTAAGGCTCGAA
TCAGTCTCGCGACTTCTCATCCGCGTCATGCCCACCCACATTCACGCAGA
TGGCAGCAGTTGACTACTTCCTTTCCACACTCATCTCGGAATTAGAAGCC
GAACAAATTCTTTCCATCGAGGACTTGTTTGGCGTCATCCAGGTAAGATT
AAAAATACATATGTATATCTATATACATATATTTCTGTACATATATTTCT
CTCTATGTACAACGTATTATTCTTTCATGTTTGCACTGTAGTAGAAGTAC
CGACAGGAGAGTTTCTACACACCTTGGTGAATAAGATACAACCAAAGAGA
TAAGATAAGTGAAGCTAAGAAAACTTATGCGTGTGCATTCCTTACTCACT
ACAACACACATTAGAATTACGTACCTGAAAATTTGCTGCGCGCGTTGGCC
GTGGAAGATGAGGACGACATGGAGGTAAATGAATCGATATCTTGGCGTGC
ATGTCGGTCGTTCAATCTTTGCTGTCGATCGTAAATTCCTTTCGCTTTTC
AGCTTCCAATTTTTTAAATAAAAATAGATTTACCCTATATTTGAAGTATT
TCCCTCGAGGGTTTACGTACTCCGGGTAATATGCCTGATTTTCAACTGCA
TATTTTCTCCTTTTTCTGCCGATACGCCTGATTTGGAATGTTATAAATTA
CCGATCCTGATCGATGGCATTTTTTTCTTTTTTTCCTTGTCTTTGTCTCG
GTTTTAACCTTCAGGTTCTAGTGAGCAAGCTCTGGTCCCGCCTTCTCAAA
GAAAATGTGATTCCACCTCAAGAAGACGAGGAGGTGGGAGTCATGGGGTT
GGAAAGAAGGGGGGACAAGGGTTGTGAGTTGTGTGCCCGTGTAATGCCCT
TGACGCGGCACCATCTCCGGCCTCGGACACTGCATAAAAAGCTGCTTAAG
CAGGTAAGCGAGGGCAAGCGGGGTGACCTGTTGACCGTATTGCAAAGGTG
GTATGAGTGAGGCTGCTGCTTGATTCTCACCTCCACCCGGACATATGTCG
TGTTTTTCACAGGGGATCTCACAAGAGGAGCTGAATATATGTGCTACAAT
CTGCAGGTGAGTCAATAGATGACGGTATGCTTTCATCTCATTCCTTCACT
GATCTCCTACTGTCCTGCCTTATCCTTCATCCAAGGCCCTGCCACACGGC
TGTGCACCGAAGCCACGACAACGACACACTGGCCACATTGCTATACACCG
TTCCTGCGTTGTTAGAGGACGAAAAAGTTGGCAAATTTGTGCGATGGGCG
AGCAAGCAACGAGGACGGGCGCAACAGGATGGTCACAACCAACAGCTTCG
CTATCAACGCTAA
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Coding sequence (CDS) from alignment at chr13:929829..931591+

>NO13G03190.1 ID=NO13G03190.1|Name=NO13G03190.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr13:929829..931591+ (Nannochloropsis oceanica)
ATGAATAGGAAGATCAAACAGCGCCAACAGCAACAACCGGCACCAAAAGT
CAGAGATGACGACGGTGGGGAAGAGGATGAGCTCGATGAGCTCGCTGCCG
CAACAACCTTGCTGGCAAGGCTCGATCTAGCCGAGCACAAGCTACGCCTC
CTGCTGTTGTCCTCCATTTCTTCGACGTCGGACAGCGGTACCTCGATGGC
AGCAGTTGACTACTTCCTTTCCACACTCATCTCGGAATTAGAAGCCGAAC
AAATTCTTTCCATCGAGGACTTGTTTGGCGTCATCCAGAATTACGTACCT
GAAAATTTGCTGCGCGCGTTGGCCGTGGAAGATGAGGACGACATGGAGGT
TCTAGTGAGCAAGCTCTGGTCCCGCCTTCTCAAAGAAAATGTGATTCCAC
CTCAAGAAGACGAGGAGGTGGGAGTCATGGGGTTGGAAAGAAGGGGGGAC
AAGGGTTGTGAGTTGTGTGCCCGTGTAATGCCCTTGACGCGGCACCATCT
CCGGCCTCGGACACTGCATAAAAAGCTGCTTAAGCAGGGGATCTCACAAG
AGGAGCTGAATATATGTGCTACAATCTGCAGGCCCTGCCACACGGCTGTG
CACCGAAGCCACGACAACGACACACTGGCCACATTGCTATACACCGTTCC
TGCGTTGTTAGAGGACGAAAAAGTTGGCAAATTTGTGCGATGGGCGAGCA
AGCAACGAGGACGGGCGCAACAGGATGGTCACAACCAACAGCTTCGCTAT
CAACGCTAA
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Synonyms
Publications