NO13G03120, NO13G03120 (gene) Nannochloropsis oceanica

Overview
NameNO13G03120
Unique NameNO13G03120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5453
Alignment locationchr13:895131..900583 -

Link to JBrowse

Properties
Property NameValue
DescriptionDEAD box RNA helicase (PRH75)
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:895131..900583 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0004386helicase activity
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0005524ATP binding
GO:0004386helicase activity
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR012562GUCT
IPR011545DEAD/DEAH_box_helicase_dom
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
Homology
BLAST of NO13G03120 vs. NCBI_GenBank
Match: CBN74178.1 (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 437.2 bits (1123), Expect = 1.100e-118
Identity = 244/547 (44.61%), Postives = 350/547 (63.99%), Query Frame = 0
Query:    3 VADKRVSPGVVEALAQANITHFTPIQRETYDPLFDGRDMIGRSRTGTGKTLAFGLPICEVVAKNLE-AEGRKNERGRAPSVIILAPTRELAKQCDDQLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLNRGTLSLKDIKHVILDEADEMLKMGFAEDIEKIFSYFDVTQAQMLLFSATTPSWVQDIARKYLKNPINVDAVGGG-NRAATTIRHVAVKVPDSYSARKNVLEDVIAAHSCGGRVMVFTQTKSEADELSTSSPYAAENTRVLHGDITQRQREITLKQFRDGFFKVLIATDVAARGIDISEVDLVIQYRPCDDSDSYVHRSGRTXXXXXXGTSVIIYSEPEWFKLRRLENDI--NIKFEKVGMPSIEDVISGLCLVQTEKLKNVDEEVVPYFKAFAADLVAKSDAPVEE-MLARCLAAMTGRKLTISRSMITGQHGMTTLVAEADGPLKEWDVLDYVKSLYDGTDRLFIPEVK--FMWNRPSAAVFDLDSVKAKRVLAKAAELAVDAGGPVPLMALSVCKEMPRLE 543
            V +K V P  V AL    I  FTP+Q  TYD +  GRD+IG+SRTGTGKT+AFGLP+ + + +  E  + R  +RGR+P  +++ PTRELA+Q   +L  +G   GL     +GG  Y  Q+R L  G D+LV TPGRIMDHL RG L L D++H +LDEADEML MGFA+DIE IFSY DV + Q+LLFSAT PSWV++IA KY  NP+ VDAVG   N+ ATT++H++++V   +  R ++LED+I  +  G   +VFT +K+E DEL+    +    ++VLHGDI+Q QR+ T+K FR   F+VL+ATDVAARGID+S++DLV+QYRP  D DSYVHRSGR XXXXXXG +V +Y+E E   +R++E  +    +FE+  +PS E V+S    V  E++K V +++V +F+  A +L+A+ ++  +E +LA+CLAA+  +     RSM+TG+    T+   A   L   DV+  V  L  G    F P V    +   P+ AVFD+ +  A +++  + E  +++      +   +C  +P L+
Sbjct:  258 VEEKDVDPKTVAALKARGIEKFTPVQAITYDHILSGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHQQRTYQRGRSPRFLVVCPTRELARQVYGELETLGSTFGLKADVFHGGAAYGPQMRSLSDGLDILVATPGRIMDHLQRGALDLSDVRHAVLDEADEMLNMGFADDIETIFSYVDVKECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKHVNKLATTVKHLSIEVSSRH--RSSMLEDIITYYGKGSHAIVFTNSKAECDELADGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRXXXXXXXGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDDMVDFFRESAQELLAEEESEDKELLLAKCLAAIARKTHVTRRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKL--GRAAGFEPMVGRIAIAKDPTTAVFDMSTEAADQLVKFSKEQNLES------IEFKMCPVLPVLQ 794          
BLAST of NO13G03120 vs. NCBI_GenBank
Match: CEL98204.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 431.8 bits (1109), Expect = 4.700e-117
Identity = 218/456 (47.81%), Postives = 309/456 (67.76%), Query Frame = 0
Query:    7 RVSPGVVEALAQANITHFTPIQRETYDPLFDGRDMIGRSRTGTGKTLAFGLPICEVVAKNLEAEGRKNERGRAPSVIILAPTRELAKQCDDQLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLNRGTLSLKDIKHVILDEADEMLKMGFAEDIEKIFSYFDVTQAQMLLFSATTPSWVQDIARKYLKNPINVDAVG-GGNRAATTIRHVAVKVPDSYSARKNVLEDVIAAHSCGGRVMVFTQTKSEADELSTSSPYAAENTRVLHGDITQRQREITLKQFRDGFFKVLIATDVAARGIDISEVDLVIQYRPCDDSDSYVHRSGRTXXXXXXGTSVIIYSEPEWFKLRRLENDINIKFEKVGMPSIEDVISGLCLVQTEKLKNVDEEVVPYFKAFAADLVAKSDA---PVEEMLARCLAAMTGRKLTISRSMITGQHGMTTL 459
            ++S    + LA+ NI + TPIQ +T+ P++DG DMIGRSRTGTGKT+AFGLP+ E +  + E+   + +R R P +++L PTRELAKQ + ++  + R   + I  I+GGVP+  Q   L  G D++VGTPGR++D +  G L L  ++HV+LDEADEML MGFAEDIE+IF  FDV   Q+L+FSATTP WV+D++R+YLKNP++VD VG    R AT++RH+AV+VP+    +  VLED++A  S GG+ +VFTQTK EADEL++   + A +  VLHGDI Q+ R+ T+++FR G FKVL+ATDVAARGID+  VDLV+Q  P  D D+YVHRSGRT      GT V++YS+ E ++L +LE+   +KF+    PS + V+         +L  V+  V+P+F   A D++ +SD      EE+LARCLA M  ++  + RS++ G    TT+
Sbjct:   96 QISGKTSDVLARKNIVNMTPIQAQTFTPIYDGSDMIGRSRTGTGKTVAFGLPLLERLRTDKESI-PEVQRDRDPKILVLEPTRELAKQVEVEIGDVARVHRMGITCIHGGVPFGPQENALRKGVDIVVGTPGRLLDLIQSGHLRLDSLRHVVLDEADEMLNMGFAEDIERIFGSFDVRSCQVLMFSATTPRWVKDMSRQYLKNPLDVDVVGKSTQRTATSVRHIAVQVPERIEDKAAVLEDIVAVESRGGQTIVFTQTKREADELASEGAFKAFSAAVLHGDIGQQTRDHTMQRFRKGLFKVLVATDVAARGIDVGNVDLVVQCSPPKDPDAYVHRSGRTGRAGREGTCVLLYSDREKWELSKLESSCGVKFDIKPPPSTQLVMESSASAVARQLDTVEGPVIPFFLETARDVLKRSDGVGMGQEELLARCLAVMAKKQELVERSLLNGMPDHTTM 550          
BLAST of NO13G03120 vs. NCBI_GenBank
Match: KOO24136.1 (nucleolar RNA helicase 2-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 419.1 bits (1076), Expect = 3.200e-113
Identity = 231/467 (49.46%), Postives = 310/467 (66.38%), Query Frame = 0
Query:    3 VADKRVSPGVVEALAQANITHFTPIQRETYDPLFDGRDMIGRSRTGTGKTLAFGLPICEVVAKNLEAEGRKNERGRAPSVIILAPTRELAKQCDDQLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLNRGTLSLKDIKHVILDEADEMLKMGFAEDIEKIFSYFDVTQAQMLLFSATTPSWVQDIARKYLKNPINVDAVG-GGNRAATTIRHVAVKVPDSYSARKNVLEDVIAAHSC-GGRVMVFTQTKSEADELSTSSPYAAENTRVLHGDITQRQREITLKQFRDGFFKVLIATDVAARGIDISEVDLVIQYRPCDDSDSYVHRSGRTXXXXXXGTSVIIYSEPEWFKLRRLENDINIKFEKVGMPSIEDVISGLCLVQTEKLKNVDEEVVPYFKAFAADLVAKSDAPVEEMLARCLAAMTGRKLTISRSMITGQHGMTTLVAEA-DGPL 467
            +A   V    V  LA+  ITHFTPIQ ++YD L  G DM+GRSRTGTGKTLAF LP+ + +A+  E    + ERGRAP +++L PTRELAKQ  + +  +GRP  + + T  GG PY  Q R L +G DVLVGTPGRI+DHLN G L L +++HV+LDEADEML MGF ED+E+I         Q +LFSAT P WV+D++R++  +PI +DAVG G + AAT++ H AV  P + +AR + L DVIA +     + +VFT TK E DEL  SS  +A + + LHGD +Q QR++TL++FR+G F VL+ATDVAARGIDI  +DLV+QYR   D DSYVHRSG  XXXXXX  S+++YSE E  ++  LE   N++F K G PS   V++    +   +LK V+ +V  YF A AA+L+A  D  V   +A+ LA + G+     RS++TG+ G TTL+ EA DG +
Sbjct:  109 IAMFNVDETTVTMLAEKGITHFTPIQAQSYDMLRAGHDMLGRSRTGTGKTLAFALPLVQRLAE--EQRRERPERGRAPRMLVLVPTRELAKQVGEVIQMLGRPHRMEVHTFTGGTPYPPQERALRNGIDVLVGTPGRIIDHLNNGGLLLDNLRHVVLDEADEMLNMGFKEDVEQILEAASAQDRQTVLFSATHPPWVRDVSRQHQTDPIEIDAVGKGQSEAATSVDHRAVLTPAAETARCSTLADVIAVYGTENAKTIVFTSTKREVDELCASSALSALSPQALHGDFSQAQRDLTLRRFREGHFNVLVATDVAARGIDIQGIDLVVQYRLPQDPDSYVHRSGXXXXXXXXXXSLLLYSEREEREVTNLERRANVRFVKSGPPSTSTVMAAAAQLVPRRLKAVEPKVQKYFTAAAAELLAGDD--VVAHVAQALALVAGKVTLTQRSLLTGEEGQTTLLLEASDGSM 571          
BLAST of NO13G03120 vs. NCBI_GenBank
Match: GAX26794.1 (hypothetical protein FisN_9Lh058 [Fistulifera solaris])

HSP 1 Score: 416.4 bits (1069), Expect = 2.100e-112
Identity = 245/594 (41.25%), Postives = 347/594 (58.42%), Query Frame = 0
Query:   12 VVEALAQANITHFTPIQRETYDPLFDGRDMIGRSRTGTGKTLAFGLP----ICEVVAKNLEAEGRKNERGRAPSVIILAPTRELAKQCDDQLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLNRGTLSLKDIKHVILDEADEMLKMGFAEDIEKIF---SYFDVTQAQMLLFSATTPSWVQDIARKYLKNPINVDAVGGGN-RAATTIRHVAVKVPDSYSARKNVLEDVIAA--------------------------------------HSCGGRVMVFTQTKSEADELSTSSPYAAENTRVLHGDITQRQREITLKQFRDGFFKVLIATDVAARGIDISEVDLVIQYRPCDDSDSYVHRSGRTXXXXXXGTSVIIYSEPEWFKLRRLENDI--NIKFEKVGMPSIEDVISGLCLVQTEKLKNVDEEVVPYFKAFAADLVAKSDAPVEEMLARCLAAMTGRKLTI-SRSMITGQHGMTTL-VAEADGPLKEWDVLDYVKSL----YDGTDRLFIPEV-KFMWNRPSAAVFDLDSVKAKRVLAKAAELAVDAGGPVPLMALSVCKEMPRLENNGRSFGR 551
            V++ L    ITHFT +Q E +DP+  GRD+IGRSRTGTGKTLAFGLP    + +++A   EA GR   RGR P +++L PTRELA+Q  D+L+ +  PLGL++   +GGV Y+ Q R L  G D++VGTPGR+MDHL+RGTLSL +++ V+LDEADEML MGFAED+E I       +  + Q LLFSATTP WV +I R+Y +N + +DA G  + R A+T+RH+AV+VP   SA+K +LED+IA                                           G+ +VF +TK  ADEL +   + +   + LHGD++Q+QR+ TL  FR G F VL+ATDVAARGIDI +VDLV+Q  P  D D+YVHRSGRT      G SV++++  +   + R+E D+  N +F+  G PSIE  ++          + + EEV  +F+  AA L+A  D    +++ARCLAA++ R   + SRS++TG+ GM T+ +      +   DVL  V  L     +  D  F  ++ K +      A+FD+    AK+++  + +  VDAGG       S+ KEM      G +FGR
Sbjct:  102 VLDVLNSRGITHFTKVQGEAFDPVLAGRDVIGRSRTGTGKTLAFGLPSIARLNKLLANRREANGRL-PRGRLPGMLVLCPTRELARQVKDELAAVAEPLGLYVDVFHGGVSYDPQSRALSQGLDIVVGTPGRVMDHLDRGTLSLNELQIVVLDEADEMLNMGFAEDVEVILEGAGKSNKDKTQCLLFSATTPKWVNEIGRRYQRNVLEIDATGNQDARVASTVRHLAVQVPPGVSAKKAILEDIIAVEISKDAGGDSESATDESENEFHNPVAAAAKKAKKQHLQQKIFGKTIVFCETKKMADELVSGGVFKSLTAQALHGDVSQKQRDATLNAFRAGAFNVLVATDVAARGIDIQDVDLVVQMDPPRDVDTYVHRSGRTGRAGNKGVSVLMFNPQQSRDIVRIERDLGHNFRFQLTGPPSIEAALNAAAKTSALACQGIPEEVSTHFEESAAALLADEDEDPVKVVARCLAAISRRATQVESRSLLTGEVGMVTVQMMNERRSVAPNDVLFTVSKLARLSRESADLTFENDIGKILARDDKTAIFDMSLEDAKKLVEFSKD--VDAGG----NTFSILKEME--VERGNNFGR 686          
BLAST of NO13G03120 vs. NCBI_GenBank
Match: XP_005776221.1 (hypothetical protein EMIHUDRAFT_443976 [Emiliania huxleyi CCMP1516] >EOD23792.1 hypothetical protein EMIHUDRAFT_443976 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 412.9 bits (1060), Expect = 2.300e-111
Identity = 251/573 (43.80%), Postives = 341/573 (59.51%), Query Frame = 0
Query:    3 VADKRVSPGVVEALAQANITHFTPIQRETYDPLFDGRDMIGRSRTGTGKTLAFGLPICEVVAKNLEAEGRKNERGRAPSVIILAPTRELAKQCDDQLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLNRGTLSLKDIKHVILDEADEMLKMGFAEDIEKIFSYFDVTQAQMLLFSATTPSWVQDIARKYLKNPINVDAVG-GGNRAATTIRHVAVKVPDSYSARKNVLEDVIAAHSCGG--RVMVFTQTKSEADELSTSSPYAAENTRVLHGDITQRQREITLKQFRDGFFKVLIATDVAARGIDISEVDLVIQYRPCDDSDSYVHRSGRTXXXXXXGTSVIIYSEPEWFKLRRLENDINIKFEKVGMPSIEDVISGLCLVQTEKLKNVDEEVVPYFKAFAADLVAKSDAPVEEMLARCLAAMTGRKLTISRSMITGQHGMTTLVAEA-DG-PLKEWD----VLDYVKSLYDGTDRLFIPEVKFMWNRPSAAVFDLDSVKAKRVLAKAAELAVDAGG-----------PVPL----MALSVCKEMPRLENNGRSFGRG 552
            +A   V    V  LA   ITHFTPIQ +++  L  G DM+GRSRTGTGKTLAF LP+   +A+ L+  G +  RGR P +++LAPTRELA+Q  +  S +  P  L     +GGVPY  Q R L  G DVL+GTPGRI+DHLN G L L  ++  +LDEADEML MGF +D+E I    D +  Q +LFSAT P WV+ +AR+Y K+P  +D VG G + AA+T++H+AV  PD+ ++R   L D+I+ H+ G   R +VFT TK E DEL  S+  A  + + LHGDI+Q+ RE TL++FRDG F VL+ATDVAARGIDI  VDL++QYR   DS+SYVHRSG  XXXXXX T+++++SE E   +  LE    I+F K G PS++ V+     +   ++  VD  ++PYFK  AA L+   DA ++++ A C A + G+      S++TG+  + TL+ EA DG PL+  D    V   V SL        I +++     P   VFDL    A  V+A    LA   GG           P  L    +++S C E+P L   G   G G
Sbjct:  125 IASFDVGAATVAVLAAKGITHFTPIQAKSFSLLKGGADMLGRSRTGTGKTLAFALPLITALAE-LQEPGERLPRGRTPRMVVLAPTRELARQVSEVCSMLAAPHRLRTVLFHGGVPYPPQQRALRDGVDVLIGTPGRIIDHLNEGALDLSAVRFAVLDEADEMLNMGFKDDVETILQATDDSLRQTVLFSATHPPWVKSVAREYQKSPELIDVVGRGRSEAASTVQHIAVLTPDAEASRARTLADLISVHATGADTRTIVFTATKREVDELCVSAALAPLSAQPLHGDISQKARETTLQKFRDGHFPVLVATDVAARGIDIEGVDLIVQYRLPQDSESYVHRSGXXXXXXXXXTAILLHSERERRSVGDLERRTGIRFAKQGPPSVQTVMGAAAALVPRRIGTVDPRLLPYFKEAAAALLEGDDA-LQKVAAMC-AVVAGQSSLSQHSLLTGEEHLKTLLVEATDGAPLEARDAVASVAQLVPSLNGERCADSIGKIR-QCASPCKVVFDLPDEMADAVVAAFDALAATDGGEDGAARPSGRRPTLLDSGVLSISACAELPELRPLGGRGGGG 693          
BLAST of NO13G03120 vs. NCBI_GenBank
Match: EJK48957.1 (hypothetical protein THAOC_32204 [Thalassiosira oceanica])

HSP 1 Score: 411.4 bits (1056), Expect = 6.600e-111
Identity = 251/615 (40.81%), Postives = 356/615 (57.89%), Query Frame = 0
Query:    8 VSPGVVEALAQANITHFTPIQRETYDPLFDGRDMIGRSRTGTGKTLAFGLP----ICEVVAKNLEAEGRKN-----ERGRAPSVIILAPTRELAKQCDDQLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLNRGTLSLKDIKHVILDEADEMLKMGFAEDIEKIF---SYFDVTQAQMLLFSATTPSWVQDIARKYLKNPINVDAVG--GGNRAATTIRHVAVKVPDSYSARKNVLEDVIAA-------------------------------------------HSCGGRVMVFTQTKSEADELSTSSPYAAENTRVLHGDITQRQREITLKQFRDGFFKVLIATDVAARGIDISEVDLVIQYRPCDDSDSYVHRSGRTXXXXXXGTSVIIYSEPEWFKLRRLENDI--NIKFEKVGMPSIEDVISGLCLVQTEKLKNVDEEVVPYFKAFAADLVAKSDAPVEEMLARCLAAMTGRKLTI-SRSMITGQHGMTT--LVAEADGPLKEWDVLDYVKSL-----YDGTDRLFIPEV-KFMWNRPSA-AVFDLDSVKAKRVLAKAAELAVDAGGPVPLMALSVCKEM--PRLENNGRSFGRG 552
            VS  V++ L+   IT+FTP+Q +   P+  GRD+IGRSRTGTGKTLAFG+P    + E+   N +AE  ++      RGR PS+I+L PTRELA+Q  ++LS + +PLGL+    +GGV Y+ Q R+L  G DVLVGTPGRI+DHL+RG L L++ K  +LDEADEML MGFAED+E I       +  + Q LLFSATTP WV++I  +Y K+ +++D  G   G R A T+RH A++VP    A+K +LED+IA                                                G+ +VFT+TK+E D+L + S +     + +HGDI Q+QR+ TL  FR G F VL+ATDVAARGIDI +VDLVIQ+ P  D+D+YVHRSGRT      G SV+++ + +   + R+E  +    KFE +G PS E  +           K+V +E   +F+  A  L+A  DA  E+++ARCLAA++ R + + SRS++TG+ G +T  +      P+   DV+  V  L      +G D  F  +V K   NR +  AVFD+    AK+++  +AE  ++AGG V     S+ KEM   R  N G+++GRG
Sbjct:  213 VSQDVIDVLSHKGITNFTPVQAKAMRPVLAGRDVIGRSRTGTGKTLAFGIPAITRLVEIAKDNGDAEVMRDGSIRMRRGRLPSMIVLCPTRELARQVGEELSAVCKPLGLFATVFHGGVSYDPQSRNLRQGIDVLVGTPGRIIDHLDRGNLDLRECKVAVLDEADEMLNMGFAEDVEVILEGAGNANDEKFQCLLFSATTPPWVREIGSRYQKDALSIDITGEQTGARTAKTVRHTAIQVPFGIDAKKAILEDIIAVEISKDVKLDASQDXXXXXXXXXXXXXXXXXXXXXXXXXXSALQQKIFGKTIVFTETKAECDQLVSGSVFKTLTAQTIHGDIGQKQRDATLAAFRAGSFNVLVATDVAARGIDIKDVDLVIQFHPPRDTDTYVHRSGRTGRAGAKGISVVLFQQNQARDIVRMERSLGHGFKFELLGPPSTEAALIAAAKTSAIACKSVADETAEHFREAAGILLATDDA--EDVVARCLAAISRRAVQVESRSLLTGEAGFSTVEMTNSRGRPVSPGDVMFTVSKLSRMSQKEGGDLSFDGDVGKIQTNRETGNAVFDMGVEDAKKLVEFSAE--IEAGGAV----FSLMKEMEISRGRNFGQTYGRG 819          
BLAST of NO13G03120 vs. NCBI_GenBank
Match: OSX73812.1 (hypothetical protein BU14_0326s0006 [Porphyra umbilicalis])

HSP 1 Score: 407.9 bits (1047), Expect = 7.300e-110
Identity = 239/558 (42.83%), Postives = 342/558 (61.29%), Query Frame = 0
Query:    7 RVSPGVVEALAQANITHFTPIQRETYDPLFDGRDMIGRSRTGTGKTLAFGLPICEVVAKNLEAEGRKN---ERGRAPSVIILAPTRELAKQCDDQLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLNRGTLSLKDIKHVILDEADEMLKMGFAEDIEKIFSYFDVT--QAQMLLFSATTPSWVQDIARKYLK-NPINVDAVGGGNRAATTIRHVAVKVPDSYSARKNVLEDVIAAHSC---GGRVMVFTQTKSEADELSTSSPYAAENTRVLHGDITQRQREITLKQFRDGFFKVLIATDVAARGIDISEVDLVIQYRPCDDSDSYVHRSGRTXXXXXXGTSVIIYSEPEWFKLRRLENDINIKFEKVGMPSIEDVISGLCLVQTEKLKNVDEEVVPYFKAFAADLVAKSDAPVEEMLARCLAAMTGRKLTIS-RSMITGQHGMTTLVAEADGPLKEWDVLDYVKSL---YDGTDRLFIPEVKFMWNRPSAAVFDLDSVKAKRVLAKAAELAVDAGGPVPLMALSVCKEMPRLENNGRSFGRG 552
            R++P VV+ LA   ITH T +Q  T+D L++GRDMI RSRTGTGKTLAF LPI E +A +  A+G       RG     ++LAPTRELA Q   +++  G+PL + +   YGG  Y  Q+  L  G DV+VGTPGR+MD ++RG + L D++  +LDEADEML MGFAED+E++F  F  T  + Q +LFSAT PSWV+ +A ++ K + I  D+VG G+  A  +RHVAV+VPD  S R ++L DV+A +     GGR +VFT+TK E DEL+ S         VLHGD++Q+QRE+TL QFR G F VL+ATDVAARG+DIS V++V+QYR   D+++YVHR+GRTXXXXXX  SV+++S+ E   LRRLE D+ +KFE+   P+ E  +    +  +  +K+VD  VV +    A +++A+   P+    A C+ A+ GR+  +  RS+++G+ G   L+     PL    V+ +V  L       D L +  ++   +  SA V D  +  A  +   A +   D       ++L +  E+P L+     FGRG
Sbjct:  155 RITPAVVDNLANRGITHMTDVQAGTFDLLYEGRDMIARSRTGTGKTLAFALPILERLAASKAADGSAGGGYRRGAKTRCLVLAPTRELANQVAREMTLTGKPLRISVECFYGGASYGAQVSALRRGVDVVVGTPGRVMDLMDRGDMDLSDVEFAVLDEADEMLSMGFAEDVERVFGAFSRTEMERQTVLFSATVPSWVKKLASQHQKRDVITYDSVGKGDMTAVNVRHVAVRVPDRDSTRASLLADVLAVYGSGHGGGRAIVFTETKRECDELAASGALEGCGAAVLHGDVSQKQREVTLAQFRSGRFAVLVATDVAARGLDISGVEVVVQYRLPSDTEAYVHRAGRTXXXXXXXVSVVLHSDREAGGLRRLERDVGLKFERTSAPAPEAALDAAAMHVSAAMKDVDAAVVAHLLPTAKEVLAQYKHPI-AAFAACM-ALAGRRTKLEYRSVLSGESGKRALLVSGTIPLTPAVVVRFVSRLARKIGVDDELEVGMIRVCADGRSAVV-DTGAAAADALAKAAVKHNSDE------LSLKLATELPPLQE--ERFGRG 701          
BLAST of NO13G03120 vs. NCBI_GenBank
Match: XP_005535707.1 (nucleolar RNA helicase II/Gu [Cyanidioschyzon merolae strain 10D] >BAM79421.1 nucleolar RNA helicase II/Gu [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 403.7 bits (1036), Expect = 1.400e-108
Identity = 250/583 (42.88%), Postives = 344/583 (59.01%), Query Frame = 0
Query:    8 VSPGVVEALAQANITHFTPIQRETYDPLFDGRDMIGRSRTGTGKTLAFGLPICE-VVAKNLEAEGRKNERGRAPSVIILAPTRELAKQCDDQLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLNRGTLSLKDIKHVILDEADEMLKMGFAEDIEKIFSYF-DVTQAQMLLFSATTPSWVQDIARKYLKNPINVDAVG-GGNRAATTIRHVAVKVPDSYSARKNVLEDVIAAHSCGG--RVMVFTQTKSEADELS-TSSPYAAENTRVLHGDITQRQREITLKQFRDGFFKVLIATDVAARGIDISEVDLVIQYRPCDDSDSYVHRSGRTXXXXXXGTSVIIYSEPEWFKLRRLENDINIKFEKVGMPSIEDVISGLCLVQTEKLKNVD-EEVVPYFKAFAADL-VAKSDAPVEEMLARCLAAMTGRKLTISRSMITGQHGMTTLVAEAD-GPLKEWDVLDYVKSLYDGTDRLFIPEV--KFMWNRPSAAVFDLDSVKAKRVL---------------------AKAAELAVDAGGPV-------PLMALSVCKEMPRLENNGRSFGRG 552
            +S     AL +  IT  T IQ  T++ +  GRD+IGRS TGTGKT AFG+P+ E +V   +    R+   GR+P  ++L PTRELAKQ  +QL  IG+P GL +   YGG  Y +Q   L  GFDVLVGTPGRI+DHL+RGTL+L +I+  +LDEADEML +GFAED+E+IF       + Q +LFSAT P WVQ IA ++ + P+  D VG    RAA  +RHVAV+VPD+  AR  +LED++ AH+  G  R +VFT TK EADE++ T+S + +   +VLHGD++QRQRE+TL+QFRDG F +L+ATDVAARG+DI EVD+++Q RP  D D+Y+HR+GR XXXXXX T+VI+YS+ E   LR LE   +I+FE+ G P++E V+          +       VVPYF+  A +L  A+ +      LA  LA ++GR     RS++TG+ G+ TL+   +   +   DVL  V+ L   + +LF  ++    +   P  AVFD+    A  +L                     A  A     AGG         P   + VC  +P L  +   F  G
Sbjct:  109 LSEATAAALRKKGITELTEIQAITFNDMRSGRDVIGRSHTGTGKTFAFGVPLVERMVEARVSNGSRRGAPGRSPCALVLTPTRELAKQVTEQLRLIGQPHGLAVDCFYGGASYTQQEEALRRGFDVLVGTPGRILDHLDRGTLNLSNIRIAVLDEADEMLSLGFAEDVERIFQKMPPKEERQTVLFSATIPPWVQKIAAQHQRAPVVHDVVGRTETRAAKNVRHVAVRVPDADFARFAMLEDIVFAHAETGNQRCIVFTDTKREADEIAMTASIFRSSVAQVLHGDVSQRQRELTLQQFRDGRFSILVATDVAARGLDIHEVDVIVQMRPPRDVDTYIHRAGRXXXXXXXXTAVIMYSDSERGLLRALERGASIRFEQAGPPTLERVLDVAAQNAARAVGEASTNRVVPYFQRAADELAAAQFEGDARRALAAALAVISGRTHIEHRSLLTGEAGLRTLLLTMNRAGVTPRDVLGIVRRL-SQSGKLFTDDIGKVRLCRDPRQAVFDVSVEAADEILRCMEPQSTTDATSSDAENGTTASHASTGAAAGGGTGDRRTRYPDFTIEVCAALPELRVDDYRFSSG 690          
BLAST of NO13G03120 vs. NCBI_GenBank
Match: XP_005718016.1 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like, putative [Chondrus crispus] >CDF38147.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like, putative [Chondrus crispus])

HSP 1 Score: 402.5 bits (1033), Expect = 3.100e-108
Identity = 236/548 (43.07%), Postives = 328/548 (59.85%), Query Frame = 0
Query:    7 RVSPGVVEALAQANITHFTPIQRETYDPLFDGRDMIGRSRTGTGKTLAFGLPICEVVAKNLEAEGRKNERGRAPSVIILAPTRELAKQCDDQLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLNRGTLSLKDIKHVILDEADEMLKMGFAEDIEKIFSYF-DVTQAQMLLFSATTPSWVQDIARKY-LKNPINVDAVGGGNRAATTIRHVAVKVPDSYSARKNVLEDVIAAHSCG----------GRVMVFTQTKSEADELSTSSPYAAENTRVLHGDITQRQREITLKQFRDGFFKVLIATDVAARGIDISEVDLVIQYRPCDDSDSYVHRSGRTXXXXXXGTSVIIYSEPEWFKLRRLENDINIKFEKVGMPSIEDVISGLCLVQTEKLKNVDEEVVPYFKAFAADLVAKSDAPVEEMLARCLAAMTGRKLTISRSMITGQHGMTTLVAEADGPLKEWDVLDYVKSLYDGTDRLFIPEVKFMWNRPSAAVFDLDSVKAKRVLAKAAELAVDAGGPVPLMALSVCKEMPRLE 543
            R+SP  ++ L + +ITH T +Q  T+D LF+G+D+I +SRTGTGKTLAFGLPI E +A   +  G    RG  P  I+LAPTRELAKQ   ++S +G+ LGL +   YGGV Y  Q   L  G DV+VGTPGRIMDHLN+G L L +I   +LDEADEML MGFA+D+E IF       + Q++LFSAT P WV+++A ++  K+ +  DAV  G+ A+TT+RH AV+VP+   AR  +L DVIA HS G           R +VFT+TK EADEL+TS         VLHGD++Q+QRE+TL QFR G F+VL+ATDVAARG+DIS VD+VIQYR  +D++SY+HR+G  XXXXXX      YS+ E   LR LE +  I+F+    P+ E  +     V  + +  VDE V+ +    A +++A       E LA  LA    R     RS+++G+ GM T+V   +  +     + ++  L    +      +  M  R  +AV D+ S  A  ++  + +L  DA      + L V   +P+L+
Sbjct:    9 RLSPRTIQMLKKNDITHTTEVQAGTFDLLFEGKDIIAKSRTGTGKTLAFGLPIMERLAIIRKERGGPKPRGEGPGCIVLAPTRELAKQVSREMSHLGQGLGLSVECFYGGVGYGPQENALRRGVDVVVGTPGRIMDHLNKGNLRLDNISFAVLDEADEMLSMGFAQDVETIFETLPPENERQVILFSATVPRWVKNLASQFQKKDVVTFDAVTSGSMASTTVRHCAVRVPERDEARAGLLADVIAVHSQGRCEDTIKRGPSRAIVFTETKREADELATSGSLDGCGAAVLHGDVSQKQREVTLSQFRQGQFQVLVATDVAARGLDISGVDVVIQYRVPNDAESYIHRAGXXXXXXXXXXXXXXYSDRESRNLRNLERECRIRFDMEVAPAPETALEAAVNVALDNISGVDERVIKHLLPRAEEMLASGAEDTAEKLAAILAIAGRRTRLEDRSILSGEKGMRTVVVSGEREISPGLAMRFISDLARAAETESRVGLIRMC-RDGSAVVDVISDAALGLVGASEKLGEDAE-----IKLRVASGVPQLK 550          
BLAST of NO13G03120 vs. NCBI_GenBank
Match: XP_002289813.1 (RNA helicase, partial [Thalassiosira pseudonana CCMP1335] >EED93350.1 RNA helicase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 399.1 bits (1024), Expect = 3.400e-107
Identity = 210/460 (45.65%), Postives = 297/460 (64.57%), Query Frame = 0
Query:   16 LAQANITHFTPIQRETYDPLFDGRDMIGRSRTGTGKTLAFGLPICEVVAKNLEAEGR---------KNERGRAPSVIILAPTRELAKQCDDQLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLNRGTLSLKDIKHVILDEADEMLKMGFAEDIEKIFSYF---DVTQAQMLLFSATTPSWVQDIARKYLKNPINVDAVG--GGNRAATTIRHVAVKVPDSYSARKNVLEDVIAAHSCGGRVMVFTQTKSEADELSTSSPYAAENTRVLHGDITQRQREITLKQFRDGFFKVLIATDVAARGIDISEVDLVIQYRPCDDSDSYVHRSGRTXXXXXXGTSVIIYSEPEWFKLRRLENDI--NIKFEKVGMPSIEDVISGLCLVQTEKLKNVDEEVVPYFKAFAADLVAKSDAPVEEMLARCLAAMTGRKLTI-SRSMITGQHGMTTL 459
            L+   ITHFTP+Q +   P+  GRD+IGRSRTGTGKTLAFG+P    + +  + +G          +  +GR PS+I+L PTRELA+Q +D+LS + +PLGL+    +GGV Y+ Q R L  G DV+VGTPGR++DH++RG L L +   V+LDEADEML MGFAED+E I       +  + Q LLFSATTP WV++I   Y ++ +++D  G   G+R A+T+RH A++VP    A+K +LED+IA     G+ +VFT+TK EADEL + S +   + + +HGDI Q+QR+ TL  FR G F VL+ATDVAARGIDI +VDLVIQ+ P  D D+YVHRSGRT      G SV+++ + +   + R+E  +    KFE +G PS E  ++          + V +E   +FK  A  L+A S +P E+++ARCLAA+  R + + SRS++TG+ G  T+
Sbjct:    1 LSHKGITHFTPVQAKAMSPVLAGRDVIGRSRTGTGKTLAFGMPALTRMVERAKEKGNLEQGRDGSTRMRKGRLPSMIVLCPTRELARQVEDELSAVCKPLGLFSSCFHGGVSYDPQARALRQGVDVIVGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVGSKNREKTQCLLFSATTPPWVKEIGSHYQRDVLSIDITGEQTGSRVASTVRHTAIQVPFGADAKKAILEDIIALF---GKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDATLAAFRAGAFNVLVATDVAARGIDIKDVDLVIQFEPPRDVDTYVHRSGRTGRAGASGISVLLFQQNQARDIVRIEKSLGHGFKFELLGPPSTEAALNAAAKTSALACRGVADETAAHFKDAAVSLLASSGSP-EDVVARCLAAIARRTVQVNSRSLLTGEEGYATV 456          
The following BLAST results are available for this feature:
BLAST of NO13G03120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN74178.11.100e-11844.61DEAD box helicase [Ectocarpus siliculosus][more]
CEL98204.14.700e-11747.81unnamed protein product [Vitrella brassicaformis C... [more]
KOO24136.13.200e-11349.46nucleolar RNA helicase 2-like protein [Chrysochrom... [more]
GAX26794.12.100e-11241.25hypothetical protein FisN_9Lh058 [Fistulifera sola... [more]
XP_005776221.12.300e-11143.80hypothetical protein EMIHUDRAFT_443976 [Emiliania ... [more]
EJK48957.16.600e-11140.81hypothetical protein THAOC_32204 [Thalassiosira oc... [more]
OSX73812.17.300e-11042.83hypothetical protein BU14_0326s0006 [Porphyra umbi... [more]
XP_005535707.11.400e-10842.88nucleolar RNA helicase II/Gu [Cyanidioschyzon mero... [more]
XP_005718016.13.100e-10843.07DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like, pu... [more]
XP_002289813.13.400e-10745.65RNA helicase, partial [Thalassiosira pseudonana CC... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03120.1NO13G03120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|249082gene_8994Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03120.1NO13G03120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03120 ID=NO13G03120|Name=NO13G03120|organism=Nannochloropsis oceanica|type=gene|length=5453bp
ATGTTGGTAGCGGACAAGAGGGTCTCGCCGGGGGTGGTGGAGGCCTTGGC
CCAGGCGAACATAACGCATTTTACGCCCATCCAACGTGAGACATACGATC
CGCTCTTTGACGGCCGCGACATGATTGgtgagaagtagggcgaggggtag
ggaggggatggtggtagaggggtgtgagagaaaatttactgatccttccc
tcgctccctcccttcctccctcctttcctccctccctccctctagGTCGC
TCTCGCACAGGCACAGGCAAAACGCTCGCCTTCGGGCTCCCTATCTGTGA
GGTGGTGGCCAAGAATCTTGAGGCTGAGGGGAGGAAGAACGAGCGTGGCC
Ggtacgtggtgcagagggaaggagggagggagggaaggagggagggagga
aagggtaatgcatgcccccatgcgacattccacgctcgtgtcctcaacct
cccctccctacctccctccctcctcccatccccatagTGCTCCTTCGGTA
ATTATTCTGGCGCCTACGCGCGAGCTGGCTAAGCAATGCGATGATCAGCT
CTCCCGCATCGGTCGACCCCTCGgtgcgtcctccctccctccctcccttc
ctctcttcctcccttccctcctcactctctgccctccttcctcctcatcc
tcattcctccctcttctccctccctctctccctcccctcctcctcagGTC
TGTGGATTCGCACCATCTACGGTGGCGTGCCATACGAACGTCAGATTCGG
GATTTAGAGTCCGGCTTTGACGTCCTCGTCGGCACGCCCGGGCGCATCAT
GGACCACCTGAATAGGGGGACTCTATCGCTCAAGGACATCAAgtacgtgt
ggttttcgcattccctccctccctccctccctccctccctccctccctcc
ctccctccctccctccctccctccctccctccctccctcccttccccctc
gtttcccccctctcggcgtctactgggtccacacgaagcccctctcatct
tgacacccctccctccctccctctctccctccctccctccttccctccct
ccttcagGCACGTCATCTTGGACGAGGCGGACGAAATGCTTAAGATGGGG
TTCGCTGAGGACATTGAGAAAATCTTCTCTTACTTCGATGTGACCCAGGC
ACAGgtatgtatatgccttccctccctccctccctcccttccttcctccc
tccctcccttcctttgtccagaaaagtcaaatctagaaaagtcaaacctg
tctcatttcatcccctccctccctccctccctccctccctccctccctcc
ctccctccctcctccctccctcccctgtagATGCTGCTCTTCTCAGCAAC
CACCCCTTCCTGGGTCCAGGATATTGCGCGAAAATACCTCAAGAACCCGA
TCAACGTCGgtaagtactccctccctccctcccctccttcctctctccct
ccgtccttccttccttccttccttccctttcattctttctctcatttctt
ctccctttttttcaacctctttccatccctccctctccttcgcttttcgc
cttcctcaaccgaccacctgaatcgctctctctgctccctccctccccct
ccagATGCCGTTGGTGGGGGCAATCGGGCCGCTACCACCATCCGTCACGT
CGCTGTCAAGgtaggactagagggagggagggagggggggagggagggag
ggagggaggaagcaaaaaggatgggaggaaatgcaaatgaaaaattaaga
agcatcaccattcattccacccgtccctcccccaccccccccacaaagGT
GCCTGACTCGTACTCTGCCCGTAAAAACGTGTTGGAGGACGTGATTGCGG
CCCACTCCTGCGGGGGTCGTGTGATGGTCTTCACGCAGACCAAATCCGAG
GCCGACGAGCTCTCGACCTCCTCCCCCTATGCGGCGGAGAACACTCGCGT
CCTCCACGGTGACATCACTCAACGCCAACGGGAGATAACCCTGAAACAAT
TCAGgtacgtacgcccctccttcctccctccttccctccttccctccctc
tcttctttttcactgcgtgtgtaacatgcttcatggactcacacacccct
ccctcctcctcctcctcctcctcctccttccctcccttctttcctccctc
ccagGGATGGTTTTTTCAAAGTCCTCATCGCCACCGACGTCGCTGCCCGT
GGTATTGATATCTCgtacgtacacccttccctccctccctccctccctcc
ctccttccctttcttcctcttcagatgtttctcatcctcccttcttccct
ccctccctccctccctccctttttttcctcctcagCGAGGTGGATCTGGT
GATCCAGTACCGCCCTTGTGATGACTCGGACTCCTATGTCCACCGCTCCG
GCCGCACTGGACGgtaagcaagccctccctccctccctctctctctccct
ccctcccttccccccgtgccctctccttggtgtcactaacccttcctccc
ttccctccctcccgtactccttccctccgtccctccctctttcttcagTG
CCGGGCGTGAGGGTACCTCAGTCATCATCTACTCGGAGCCCGAATGGTTC
AAACTCCGCCGCCTCGAAAACGACATTAATgtacgtctctccctccctcc
ctccctccctccctccctccccctcttcctctttcgttccttttgccgcc
ccataccatataccctactcacccttccctccctccctccttccctccct
ccctccctccttccccctagATCAAGTTCGAGAAGGTAGGCATGCCGTCC
ATCGAGGACGTCATCTCCGGCCTCTGCCTGGTCCAGACGGAGAAACTCAA
GAACGTTGATGAGGAGgtccgtgcctacccttccttcttgccctcccccg
tgccctccctcctcactggtcgtcctccgttgaagctcaccctccctccc
tccctccctccctccctccttagGTTGTTCCCTATTTCAAGGCTTTTGCG
GCGGATTTGGTGGCCAAATCGGACGCTCCAGTGGAGGAGATGCTCGCCCG
CTGCCTCGCCGCGATGACGGGTCGAAAGCTCACCATCTCTCGgtgcgtgt
gccacccttccctccctccttccctccctccctccctccctttctccctc
cctcgcgtcgtgacctggtgtgcggcgtgtgtgcagtgtctttcttctgt
gcatgcgtggatgcctccaaagaggagggagagaagcatcagcagccgta
gtagtagtagctgcagtgacaagcagcaaccagcaggagccccaaattcc
ccttttccctcctctcgttcttccattattcttcctccttcttatccgcc
cctccctccccctctccctccccccctccctccccccctccctcagCTCC
ATGATCACGGGGCAGCACGGAATGACCACCCTCGTGGCCGAGGCCGACGG
ACCTCTCAAAGAGTGGGATGTGTTGGATTACGTCAAGgtaggcccttccc
tccctccctccccccctcctctccctccctccctccgtgccttctgttcc
catttctatcccttccttcccttccaatactttcgcccgcatgcccaccc
ctcacacccctccctccgtcccgcccttcctcccttcctccctccctccc
tccctccctccctccctccctccctccctcccttcctcccttcctccctc
cctccctccctccctcccccagTCCCTATACGACGGCACCGACCGCCTCT
TTATTCCTGAGGTGAAGTTTATGTGGAACCGACCTAGTGCCGCCGTCTTC
GATTTGGACAGTGTCAAGGCCAAGCGCGTCCTTGCCAAGgtacacccccc
tccttcctgccctccctccctcctcccttcttccctttgcttctttcacc
tgtggttgttttccttctcgccctctctccctcccgccttatcgttccct
ttccgctcctccctcctcctctttctaccattccttgtcctcatcagcag
ccctccccctccctccctccctccctccctccctccctagGCGGCGGAAC
TTGCTGTCGACGCTGGAGGTCCCGTGCCGTTAATGGCGCTTTCCGTGTGC
AAGGAAATGCCTCGCTTGGAGAACAACGGCCGTTCCTTTGGACGAGgtag
ggagggagggagggagggagggagggagggagggagggagggagggaggg
agggagggagggagggagggaggagggagggagggagggagggagggagg
gagggagggagggagggtgagtagcaccttcctgaacaaaatcgagtcgg
tcacagcacacacaaataccagaccctcatccgcgttccctccctctctc
cttccttccctccctccctccctttcctcgtcttgctcttcttgtccagG
CGGCGGTGGTCGGGGAGGGTATCAAGGAAACAACCCGCGCGGAGGGGGCT
ACCAAGGAAGCAACAACAGATACGGAGGCGGTGGTGGAGGGGGCGGCTAT
CAGGGCAACAGGAATGGAGGGGGAGGCAAGTCTTACAAGGACTCGTGGGG
CAGCGGTGGAGgtatgtttcacatcccttcttcttattgttattattgtt
cttactatcgtattctattttgcatcgtttgtttctaccatctccttcgt
tccttcctttcctaacccctgctctattgtggctcgactcaattgctcgt
gtccatccctccctccctccctccctccctccctcctttagGTGGCGGTG
GCCGGTCCTCGGCCCCGTGGAAGAAGAACACGGGCGGTCGCTCGTTTGAG
AAATCCTGGGAGAGTGGAGGAGGAGGAGGAGGAGGAGGGGGGGGGGTCGA
CGCGATGGGGGAGGGAGGGGGGGGAAGGGGGGAGACGAGAGCATCGACAA
GTTTCTGGAGTCTCTTGACTGGCCGTAAGACGGTCGGAGGGAAGGAGGGA
GGGAGGGATGGAGAAGTAATGGAGATCAAATTTTTGTGTGGTAAAAAGGA
AGCGGCTGGAAGTCTTGCCAGTAGTAGCAGCAGCAGCAGTAGCAGAGCAG
TGACACCAACAGCAGGTGCAGCAGACAGAGAACCGAGGAAGAAGAAGGCA
GAAGAAGGAGAAGgtagaagatgactataaagaagaagaaaaagaaggag
aagaagagacaaaggaagtctcctacccaaccgccagCACCGCCCCCACA
GCAACAGCAGCAGCAGCAACAGCAGCAGCAACAGGAGCAGCAGCTAAGTC
AAATATTAAGTGAAGGCATGGAAAGAAGGGAGGGATGCAGGGTGGAAGGG
AAGGAAGGAGAGAGGAAAGGAAGGAAGGTACGCTTGTTTGAAGACAAGGA
AATACGGAAAATGGGAGAAGGAAGACAGGAAGGGAAGGTGGAGGGAGCAA
GGGAGGAAAGGAGTGGAGGAAAGCGCTCTCAGGCAGCTGAGGAGGCTGTT
TGA
back to top

protein sequence of NO13G03120.1

>NO13G03120.1-protein ID=NO13G03120.1-protein|Name=NO13G03120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=817bp
MLVADKRVSPGVVEALAQANITHFTPIQRETYDPLFDGRDMIGRSRTGTG
KTLAFGLPICEVVAKNLEAEGRKNERGRAPSVIILAPTRELAKQCDDQLS
RIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLNRGTLS
LKDIKHVILDEADEMLKMGFAEDIEKIFSYFDVTQAQMLLFSATTPSWVQ
DIARKYLKNPINVDAVGGGNRAATTIRHVAVKVPDSYSARKNVLEDVIAA
HSCGGRVMVFTQTKSEADELSTSSPYAAENTRVLHGDITQRQREITLKQF
RDGFFKVLIATDVAARGIDISEVDLVIQYRPCDDSDSYVHRSGRTGRAGR
EGTSVIIYSEPEWFKLRRLENDINIKFEKVGMPSIEDVISGLCLVQTEKL
KNVDEEVVPYFKAFAADLVAKSDAPVEEMLARCLAAMTGRKLTISRSMIT
GQHGMTTLVAEADGPLKEWDVLDYVKSLYDGTDRLFIPEVKFMWNRPSAA
VFDLDSVKAKRVLAKAAELAVDAGGPVPLMALSVCKEMPRLENNGRSFGR
GGGGRGGYQGNNPRGGGYQGSNNRYGGGGGGGGYQGNRNGGGGKSYKDSW
GSGGGGGGRSSAPWKKNTGGRSFEKSWESGGGGGGGGGGVDAMGEGGGGR
GETRASTSFWSLLTGRKTVGGKEGGRDGEVMEIKFLCGKKEAAGSLASSS
SSSSSRAVTPTAGAADREPRKKKAEEGEAPPPQQQQQQQQQQQQEQQLSQ
ILSEGMERREGCRVEGKEGERKGRKVRLFEDKEIRKMGEGRQEGKVEGAR
EERSGGKRSQAAEEAV*
back to top
Synonyms
Publications