NO13G03060, NO13G03060 (gene) Nannochloropsis oceanica

Overview
NameNO13G03060
Unique NameNO13G03060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2104
Alignment locationchr13:874335..877835 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:874335..877835 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0035091phosphatidylinositol binding
GO:0035091phosphatidylinositol binding
Vocabulary: INTERPRO
TermDefinition
IPR036871PX_dom_sf
IPR001683Phox
Homology
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BLAST of NO13G03060 vs. NCBI_GenBank
Match: CBJ28180.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.1 bits (183), Expect = 8.800e-10
Identity = 70/259 (27.03%), Postives = 109/259 (42.08%), Query Frame = 0 
Query:  241 GQFTLKMVGSRLATPPGSGSSYTEYMVKCCWG--FEPEHAFSWIVAHRYSDFAALDLXXXXXXXXXXXXXXXXLPPRERFWVDSNGPAVVTKRRKGLEEYLLRILSHVSEALPSPTLDAFFHLTARIDRIKQTLGRPSPPPSSPSFFAYNSPIRSTRAPPSNSEQEGGGEGGKERGRVILPTYVHSVDLRRLSSTAAYLAYETKSISPLSAKGLATLEGKVGKLQAVLDKIDVKKDFMEDTYLCDLLNELMLDWPSLKA 498
            G F+    G+       +  +YTE++++C WG      H  SW+VA RY +F ALDL                LPP+E F      P VV +R KGLE Y+  ++    + L S  LD F  ++ R+     TL  P+   SS    +Y    R+  A  S+S              ++   Y+    L  +SS  A+   + +  SP+    +A  E  V +L+  + +I      + D  L  L+      WP LK+
Sbjct:  557 GVFSWSYYGTSDGIESNTRDAYTEHVMRCQWGKSVHTMHEMSWMVARRYREFDALDL-DLRDAYPDRKDALPRLPPKEFF---KMAPDVVERRAKGLELYMTTLIRRFPDMLASSHLDRFLTISERL----STLQTPAAVGSSSPRLSY----RNLGANGSSSNVFPAHSPESRSSSLVGTDYI----LNLMSSEEAWRLSQARRSSPVD---VAFAEDLVHELEDHISRIPPDAHLLSDEKLYGLVARCQKAWPGLKS 796
The following BLAST results are available for this feature:
BLAST of NO13G03060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28180.18.800e-1027.03conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|249280gene_9002Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03060.1NO13G03060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G03060.2NO13G03060.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G03060.3NO13G03060.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03060.1NO13G03060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G03060.2NO13G03060.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G03060.3NO13G03060.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03060 ID=NO13G03060|Name=NO13G03060|organism=Nannochloropsis oceanica|type=gene|length=2104bp
AATAGCCACACCGAACACTCACACACACCCATGGGTAACGGCAAGAAGAA
GAACAAGAACAAGGGCAGCAAGATCCAGAAGCCTATTTCAGGCCAAGTTC
CGAGTGCCGCTGGGGGGATGACCCCTAGCACATCACCCACTAGTCTCTCC
AAGGACACATCTGCAGCCGCGAAAAAGGCTACCGTGGAACCGCCCGTCAT
TTCCGCCATCCCGCCTGCCGATGTGGAAAAAAAGGCGGACGAAGTGGTCA
CTCCTGCCTCTTTCGCCACCCGTGCTGTCCCCTTGAAGCCAGAGAACGAG
GGAGAAAAGGAGAGCAAGGAAGGGAATAGGAAACCTGAGACTGGGGACCC
GCGCGCTCCCACCCCATCGGACTCTACGCCTTCCGCATCAAGCTCATCTT
CGGATACTCCCAAGCCTGCCGAGGTCCCAACAGCACCGAACCTTACTCCT
GCTTCCATCCCCCCTTCTTCTTCCTCCACCATTCACCCCCTGTCCTCCTC
CTCCTCCTCTTCCTCGGAGACTGGAAGCAAACCGTCGCCGATGAAAAGCC
TTACTAGCCACACAGCTGAAGAGATAGCAGCCTTGCCCATTCCCCCTCCT
TTGAGGGAGAGCGATGTCGGCGCGGCTACTGCTGCTGCCGCCGCTGCAGA
GAAGGAGGGAGGGATGGAGGATGGGGTTGACGATAGCTCAATTCGCCCGG
CCAGCCCCTCGCATCTTCGGCCGGAGAGCACCAAAACCATGCTACAGgta
cactttcaaaaggaagaatacgcgtattatatatatatatatatacatgt
acattcactcgatcccaatgcccctccctccctccctccctccctcttat
ctaccgtccacagGAGGGACAGTTCACCCTCAAGATGGTCGGGTCTCGCC
TTGCCACTCCTCCGGGAAGCGGAAGCTCCTACACAGAGTACATGGTAAAG
TGCTGCTGGGGCTTTGAGgtacgtgcatcatcgccctccctccttccctt
ctccccgtcctccctccctcctttcctgcctccctcccttcgttctccct
cggtcccagccacccatgtcgcccctcgccaccgcccacccctgccctcc
ctccctccctccttctttccttccttgtacagCCGGAACATGCCTTCTCC
TGGATTGTCGCTCATCGCTACTCCGACTTTGCTGCCCTCGACCTCGCCTT
GCGTGCCGCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCCTTCCAC
CCAGGGAGCGGTTTTGGGTGGACTCGAATGGGCCCGCGGTGGTGACCAAG
CGGAGGAAGGGCTTAGAGGAGgtgggaagggagggaaggagggagggacg
gaaggacggatggacggttggaaagcgaggagagtcgaggattcaagagc
ttaaatttcctcctgccgctctggacctgactcctcgctctcacccctcc
ttccctccctccctccctcccttcctttctcagTACCTCCTCCGCATCCT
GTCCCACGTATCGGAAGCCCTTCCCTCCCCCACCCTCGACGCCTTTTTCC
ACCTCACCGCCCGCATCGACCGGATCAAGCAGACGCTCGgtccgtgccct
ccttcccttcctctctcttcccctcgttccccccctcctggctaacctca
ccccttcctccctccctccctcccttctcccctcagGGCGACCTTCCCCG
CCACCCTCCTCTCCTTCCTTCTTTGCTTACAATAGCCCCATTCGAAGCAC
GCGCGCCCCCCCCTCCAACTCCGAGCAAGAGGGAGGGGGGGAAGGAGGGA
AGGAAAGGGGGCGGGTCATCCTCCCTACCTACGTCCACAGTGTCGATCTG
CGACGGCTTTCATGTACGTGGGAAGGGAGGGAGGAAGGGAGGAAGGGAGG
GAGGGAGGGAGGGAGGGATAAGGAGGAGAAATAATGCAACAGACCGCAAA
CGGAAGAAAGGGATATTCTGAGATCGTTTGATTGATCGGAAACATAGACA
TTGGTCCTGATTGATTAAGCCTCTGATATAGATATATCGCAACGTAAGTG
TCAGAGAGGCAGTACATGCGTAAGTCCACCACGCCACCGAGCGGGACGCT
GCTG
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protein sequence of NO13G03060.1

>NO13G03060.1-protein ID=NO13G03060.1-protein|Name=NO13G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MGNGKKKNKNKGSKIQKPISGQVPSAAGGMTPSTSPTSLSKDTSAAAKKA
TVEPPVISAIPPADVEKKADEVVTPASFATRAVPLKPENEGEKESKEGNR
KPETGDPRAPTPSDSTPSASSSSSDTPKPAEVPTAPNLTPASIPPSSSST
IHPLSSSSSSSSETGSKPSPMKSLTSHTAEEIAALPIPPPLRESDVGAAT
AAAAAAEKEGGMEDGVDDSSIRPASPSHLRPESTKTMLQEGQFTLKMVGS
RLATPPGSGSSYTEYMVKCCWGFEPEHAFSWIVAHRYSDFAALDLALRAA
LPPSLPPSLLPLPPRERFWVDSNGPAVVTKRRKGLEEYLLRILSHVSEAL
PSPTLDAFFHLTARIDRIKQTLGRPSPPPSSPSFFAYNSPIRSTRAPPSN
SEQEGGGEGGKERGRVILPTYVHSVDLRRLSCTWEGREEGRKGGREGGRD
KEEK*
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protein sequence of NO13G03060.2

>NO13G03060.2-protein ID=NO13G03060.2-protein|Name=NO13G03060.2|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MGNGKKKNKNKGSKIQKPISGQVPSAAGGMTPSTSPTSLSKDTSAAAKKA
TVEPPVISAIPPADVEKKADEVVTPASFATRAVPLKPENEGEKESKEGNR
KPETGDPRAPTPSDSTPSASSSSSDTPKPAEVPTAPNLTPASIPPSSSST
IHPLSSSSSSSSETGSKPSPMKSLTSHTAEEIAALPIPPPLRESDVGAAT
AAAAAAEKEGGMEDGVDDSSIRPASPSHLRPESTKTMLQEGQFTLKMVGS
RLATPPGSGSSYTEYMVKCCWGFEPEHAFSWIVAHRYSDFAALDLALRAA
LPPSLPPSLLPLPPRERFWVDSNGPAVVTKRRKGLEEYLLRILSHVSEAL
PSPTLDAFFHLTARIDRIKQTLGRPSPPPSSPSFFAYNSPIRSTRAPPSN
SEQEGGGEGGKERGRVILPTYVHSVDLRRLSSTAAYLAYETKSISPLSAK
GLATLEGKVGKLQAVLDKIDVKKDFMEDTYLCDLLNELMLDWPSLKALTN
TIQEEEGEEEEAGEEKEKGKALEALLHGRPLLGRALTCDTTLASLVASLR
EKLFVKYGEKE*
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protein sequence of NO13G03060.3

>NO13G03060.3-protein ID=NO13G03060.3-protein|Name=NO13G03060.3|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MGNGKKKNKNKGSKIQKPISGQVPSAAGGMTPSTSPTSLSKDTSAAAKKA
TVEPPVISAIPPADVEKKADEVVTPASFATRAVPLKPENEGEKESKEGNR
KPETGDPRAPTPSDSTPSASSSSSDTPKPAEVPTAPNLTPASIPPSSSST
IHPLSSSSSSSSETGSKPSPMKSLTSHTAEEIAALPIPPPLRESDVGAAT
AAAAAAEKEGGMEDGVDDSSIRPASPSHLRPESTKTMLQEGQFTLKMVGS
RLATPPGSGSSYTEYMVKCCWGFEPEHAFSWIVAHRYSDFAALDLALRAA
LPPSLPPSLLPLPPRERFWVDSNGPAVVTKRRKGLEEYLLRILSHVSEAL
PSPTLDAFFHLTARIDRIKQTLGRPSPPPSSPSFFAYNSPIRSTRAPPSN
SEQEGGGEGGKERGRVILPTYVHSVDLRRLSSTAAYLAYETKSISPLSAK
GLATLEGKVGKLQAVLDKIDVKKDFMEDTYLCDLLNELMLDWPSLKALTN
TIQEEEGEEEEAGEEKEKGKVTVLSVISPSRSLSLLFFLYLSLSFCLHAS
HSPSFKVLLFFFRPRGLSISTGDSRPPTSLPFLLPSLTPFLPQALEALLH
GRPLLGRALTCDTTLASLVASLREKLFVKYGEKE*
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Synonyms
Publications