NO13G03060.2, NO13G03060.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03060.2
Unique NameNO13G03060.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2217
Alignment locationchr13:874335..877835 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:874335..877835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G03060.2 vs.
Match: CBJ28180.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 82.8 bits (203), Expect = 3.700e-12
Identity = 75/259 (28.96%), Postives = 115/259 (44.40%), Query Frame = 0 
Query:  241 GQFTLKMVGSRLATPPGSGSSYTEYMVKCCWG--FEPEHAFSWIVAHRYSDFAALDLALRAALPPSLPPSLLPLPPRERFWVDSNGPAVVTKRRKGLEEYLLRILSHVSEALPSPTLDAFFHLTARIDRIKQTLGRPSPPPSSPSFFAYNSPIRSTRAPPSNSEQEGGGEGGKERGRVILPTYVHSVDLRRLSSTAAYLAYETKSISPLSAKGLATLEGKVGKLQAVLDKIDVKKDFMEDTYLCDLLNELMLDWPSLKA 498
            G F+    G+       +  +YTE++++C WG      H  SW+VA RY +F ALDL LR A  P    +L  LPP+E F      P VV +R KGLE Y+  ++    + L S  LD F  ++ R+     TL  P+   SS    +Y    R+  A  S+S              ++   Y+    L  +SS  A+   + +  SP+    +A  E  V +L+  + +I      + D  L  L+      WP LK+
Sbjct:  557 GVFSWSYYGTSDGIESNTRDAYTEHVMRCQWGKSVHTMHEMSWMVARRYREFDALDLDLRDAY-PDRKDALPRLPPKEFF---KMAPDVVERRAKGLELYMTTLIRRFPDMLASSHLDRFLTISERL----STLQTPAAVGSSSPRLSY----RNLGANGSSSNVFPAHSPESRSSSLVGTDYI----LNLMSSEEAWRLSQARRSSPVD---VAFAEDLVHELEDHISRIPPDAHLLSDEKLYGLVARCQKAWPGLKS 796
The following BLAST results are available for this feature:
BLAST of NO13G03060.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28180.13.700e-1228.96conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03060NO13G03060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03060.2NO13G03060.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03060.2.cds1NO13G03060.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03060.2.cds2NO13G03060.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03060.2.cds3NO13G03060.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03060.2.cds4NO13G03060.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03060.2.cds5NO13G03060.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03060.2.cds6NO13G03060.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03060.2.cds7NO13G03060.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03060.2.cds8NO13G03060.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03060.2 ID=NO13G03060.2|Name=NO13G03060.2|organism=Nannochloropsis oceanica|type=mRNA|length=2217bp
AATAGCCACACCGAACACTCACACACACCCATGGGTAACGGCAAGAAGAA
GAACAAGAACAAGGGCAGCAAGATCCAGAAGCCTATTTCAGGCCAAGTTC
CGAGTGCCGCTGGGGGGATGACCCCTAGCACATCACCCACTAGTCTCTCC
AAGGACACATCTGCAGCCGCGAAAAAGGCTACCGTGGAACCGCCCGTCAT
TTCCGCCATCCCGCCTGCCGATGTGGAAAAAAAGGCGGACGAAGTGGTCA
CTCCTGCCTCTTTCGCCACCCGTGCTGTCCCCTTGAAGCCAGAGAACGAG
GGAGAAAAGGAGAGCAAGGAAGGGAATAGGAAACCTGAGACTGGGGACCC
GCGCGCTCCCACCCCATCGGACTCTACGCCTTCCGCATCAAGCTCATCTT
CGGATACTCCCAAGCCTGCCGAGGTCCCAACAGCACCGAACCTTACTCCT
GCTTCCATCCCCCCTTCTTCTTCCTCCACCATTCACCCCCTGTCCTCCTC
CTCCTCCTCTTCCTCGGAGACTGGAAGCAAACCGTCGCCGATGAAAAGCC
TTACTAGCCACACAGCTGAAGAGATAGCAGCCTTGCCCATTCCCCCTCCT
TTGAGGGAGAGCGATGTCGGCGCGGCTACTGCTGCTGCCGCCGCTGCAGA
GAAGGAGGGAGGGATGGAGGATGGGGTTGACGATAGCTCAATTCGCCCGG
CCAGCCCCTCGCATCTTCGGCCGGAGAGCACCAAAACCATGCTACAGGAG
GGACAGTTCACCCTCAAGATGGTCGGGTCTCGCCTTGCCACTCCTCCGGG
AAGCGGAAGCTCCTACACAGAGTACATGGTAAAGTGCTGCTGGGGCTTTG
AGCCGGAACATGCCTTCTCCTGGATTGTCGCTCATCGCTACTCCGACTTT
GCTGCCCTCGACCTCGCCTTGCGTGCCGCGCTCCCTCCCTCCCTCCCTCC
CTCCCTCCTTCCCCTTCCACCCAGGGAGCGGTTTTGGGTGGACTCGAATG
GGCCCGCGGTGGTGACCAAGCGGAGGAAGGGCTTAGAGGAGTACCTCCTC
CGCATCCTGTCCCACGTATCGGAAGCCCTTCCCTCCCCCACCCTCGACGC
CTTTTTCCACCTCACCGCCCGCATCGACCGGATCAAGCAGACGCTCGGGC
GACCTTCCCCGCCACCCTCCTCTCCTTCCTTCTTTGCTTACAATAGCCCC
ATTCGAAGCACGCGCGCCCCCCCCTCCAACTCCGAGCAAGAGGGAGGGGG
GGAAGGAGGGAAGGAAAGGGGGCGGGTCATCCTCCCTACCTACGTCCACA
GTGTCGATCTGCGACGGCTTTCATCCACGGCCGCCTACCTTGCCTACGAA
ACCAAGTCGATCTCGCCCCTGTCTGCTAAGGGCCTGGCTACCCTCGAAGG
GAAGGTGGGGAAGCTCCAGGCAGTATTGGACAAGATCGATGTCAAGAAGG
ACTTCATGGAGGACACCTACCTCTGCGACCTTCTGAATGAGCTCATGCTC
GACTGGCCGTCGCTCAAGGCGCTGACCAACACCATCCAGGAGGAGGAAGG
GGAGGAAGAGGAGGCAGGGGAAGAGAAAGAGAAGGGCAAGGCCCTGGAGG
CCCTCCTCCACGGCCGGCCTCTTCTCGGCCGTGCCCTGACGTGCGACACC
ACCCTCGCGTCCCTTGTGGCTTCTCTCCGAGAAAAGCTCTTCGTGAAGTA
CGGAGAAAAGGAGTGAACGGAGAGAGGGGAGGGCGGGAGGGAGGAATGGA
GATTGAGAGGAAGGGCACGACGTGTAATTTGTAATGTGATGTAGATTGAA
ACGGTCAGCAGGGCAGTAGAAGAAAAAGAAAAAGAAGAAGAAGAAGAAGA
AGAACTAGAAGGGAGAAGAAACAAATGACATTCGAAAAAGAGCGAACTGG
GAAGAAAAGGTCAAAAAATAGTTCCCCATAAAGTAGTAGAACAAGAAGCT
GAAGGACCGGGGACCGGTGGCCGGGGGCCTCAGGCCTTGTAGTTAACAGG
GGGACAGGTAACAGGAACTCACTGCAGTTAGGGATGACACGGTAGCGGAG
TGGTCCGTTGAAATGGATTATAGTGGTGGTAGGCAAGGAGGAGGGGGAGA
AGGAAGAAGGGTGATTGAGAAAAGAAATTTAATTTTTAAGACAGGGAGTG
ACAGTCATTAGCGATGGCAGGGTCAGCAAAAAACAGAACAAAGAAAAGAC
AACAAGTATTGTTCCAA
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protein sequence of NO13G03060.2

>NO13G03060.2-protein ID=NO13G03060.2-protein|Name=NO13G03060.2|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MGNGKKKNKNKGSKIQKPISGQVPSAAGGMTPSTSPTSLSKDTSAAAKKA
TVEPPVISAIPPADVEKKADEVVTPASFATRAVPLKPENEGEKESKEGNR
KPETGDPRAPTPSDSTPSASSSSSDTPKPAEVPTAPNLTPASIPPSSSST
IHPLSSSSSSSSETGSKPSPMKSLTSHTAEEIAALPIPPPLRESDVGAAT
AAAAAAEKEGGMEDGVDDSSIRPASPSHLRPESTKTMLQEGQFTLKMVGS
RLATPPGSGSSYTEYMVKCCWGFEPEHAFSWIVAHRYSDFAALDLALRAA
LPPSLPPSLLPLPPRERFWVDSNGPAVVTKRRKGLEEYLLRILSHVSEAL
PSPTLDAFFHLTARIDRIKQTLGRPSPPPSSPSFFAYNSPIRSTRAPPSN
SEQEGGGEGGKERGRVILPTYVHSVDLRRLSSTAAYLAYETKSISPLSAK
GLATLEGKVGKLQAVLDKIDVKKDFMEDTYLCDLLNELMLDWPSLKALTN
TIQEEEGEEEEAGEEKEKGKALEALLHGRPLLGRALTCDTTLASLVASLR
EKLFVKYGEKE*
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mRNA from alignment at chr13:874335..877835+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03060.2 ID=NO13G03060.2|Name=NO13G03060.2|organism=Nannochloropsis oceanica|type=mRNA|length=3501bp|location=Sequence derived from alignment at chr13:874335..877835+ (Nannochloropsis oceanica)
AATAGCCACACCGAACACTCACACACACCCATGGGTAACGGCAAGAAGAA
GAACAAGAACAAGGGCAGCAAGATCCAGAAGCCTATTTCAGGCCAAGTTC
CGAGTGCCGCTGGGGGGATGACCCCTAGCACATCACCCACTAGTCTCTCC
AAGGACACATCTGCAGCCGCGAAAAAGGCTACCGTGGAACCGCCCGTCAT
TTCCGCCATCCCGCCTGCCGATGTGGAAAAAAAGGCGGACGAAGTGGTCA
CTCCTGCCTCTTTCGCCACCCGTGCTGTCCCCTTGAAGCCAGAGAACGAG
GGAGAAAAGGAGAGCAAGGAAGGGAATAGGAAACCTGAGACTGGGGACCC
GCGCGCTCCCACCCCATCGGACTCTACGCCTTCCGCATCAAGCTCATCTT
CGGATACTCCCAAGCCTGCCGAGGTCCCAACAGCACCGAACCTTACTCCT
GCTTCCATCCCCCCTTCTTCTTCCTCCACCATTCACCCCCTGTCCTCCTC
CTCCTCCTCTTCCTCGGAGACTGGAAGCAAACCGTCGCCGATGAAAAGCC
TTACTAGCCACACAGCTGAAGAGATAGCAGCCTTGCCCATTCCCCCTCCT
TTGAGGGAGAGCGATGTCGGCGCGGCTACTGCTGCTGCCGCCGCTGCAGA
GAAGGAGGGAGGGATGGAGGATGGGGTTGACGATAGCTCAATTCGCCCGG
CCAGCCCCTCGCATCTTCGGCCGGAGAGCACCAAAACCATGCTACAGGTA
CACTTTCAAAAGGAAGAATACGCGTATTATATATATATATATATACATGT
ACATTCACTCGATCCCAATGCCCCTCCCTCCCTCCCTCCCTCCCTCTTAT
CTACCGTCCACAGGAGGGACAGTTCACCCTCAAGATGGTCGGGTCTCGCC
TTGCCACTCCTCCGGGAAGCGGAAGCTCCTACACAGAGTACATGGTAAAG
TGCTGCTGGGGCTTTGAGGTACGTGCATCATCGCCCTCCCTCCTTCCCTT
CTCCCCGTCCTCCCTCCCTCCTTTCCTGCCTCCCTCCCTTCGTTCTCCCT
CGGTCCCAGCCACCCATGTCGCCCCTCGCCACCGCCCACCCCTGCCCTCC
CTCCCTCCCTCCTTCTTTCCTTCCTTGTACAGCCGGAACATGCCTTCTCC
TGGATTGTCGCTCATCGCTACTCCGACTTTGCTGCCCTCGACCTCGCCTT
GCGTGCCGCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCCTTCCAC
CCAGGGAGCGGTTTTGGGTGGACTCGAATGGGCCCGCGGTGGTGACCAAG
CGGAGGAAGGGCTTAGAGGAGGTGGGAAGGGAGGGAAGGAGGGAGGGACG
GAAGGACGGATGGACGGTTGGAAAGCGAGGAGAGTCGAGGATTCAAGAGC
TTAAATTTCCTCCTGCCGCTCTGGACCTGACTCCTCGCTCTCACCCCTCC
TTCCCTCCCTCCCTCCCTCCCTTCCTTTCTCAGTACCTCCTCCGCATCCT
GTCCCACGTATCGGAAGCCCTTCCCTCCCCCACCCTCGACGCCTTTTTCC
ACCTCACCGCCCGCATCGACCGGATCAAGCAGACGCTCGGTCCGTGCCCT
CCTTCCCTTCCTCTCTCTTCCCCTCGTTCCCCCCCTCCTGGCTAACCTCA
CCCCTTCCTCCCTCCCTCCCTCCCTTCTCCCCTCAGGGCGACCTTCCCCG
CCACCCTCCTCTCCTTCCTTCTTTGCTTACAATAGCCCCATTCGAAGCAC
GCGCGCCCCCCCCTCCAACTCCGAGCAAGAGGGAGGGGGGGAAGGAGGGA
AGGAAAGGGGGCGGGTCATCCTCCCTACCTACGTCCACAGTGTCGATCTG
CGACGGCTTTCATGTACGTGGGAAGGGAGGGAGGAAGGGAGGAAGGGAGG
GAGGGAGGGAGGGAGGGATAAGGAGGAGAAATAATGCAACAGACCGCAAA
CGGAAGAAAGGGATATTCTGAGATCGTTTGATTGATCGGAAACATAGACA
TTGGTCCTGATTGATTAAGCCTCTGATATAGATATATCGCAACGTAAGTG
TCAGAGAGGCAGTACATGCGTAAGTCCACCACGCCACCGAGCGGGACGCT
GCTGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGCCA
CGGCCGCCTACCTTGCCTACGAAACCAAGTCGATCTCGCCCCTGTCTGCT
AAGGGCCTGGCTACCCTCGAAGGGAAGGTGGGGAAGCTCCAGGCAGTATT
GGACAAGATCGATGTCAAGAAGGACTTCATGGAGGTGGGTCGATTAGGAG
GGAGGGAGGGAGGGAGGAAAGAATGTGTATGTGTGGCGTCTCTCAGTCGT
CCTGTATATTGTTATCCCCTCCCTCCCTTCCTCCTCCCTCTCTCCTTCTC
TCCCTCCCTTTCTCCTTTCTCTCTCCCTTCCTCAAAGAGCTACCGCTGGA
CTGACGTCATTGACAACAGCTGACCTCCCCTCCTTTCCTCCCTCCCTCCC
TCCCTCCCTCTCTCCCTCCCTCACAGGACACCTACCTCTGCGACCTTCTG
AATGAGCTCATGCTCGACTGGCCGTCGCTCAAGGCGCTGACCAACACCAT
CCAGGAGGAGGAAGGGGAGGAAGAGGAGGCAGGGGAAGAGAAAGAGAAGG
GCAAGGTAACCGTGCTCTCTGTGATTTCTCCCTCTCGTTCACTTTCTCTC
CTTTTCTTCCTTTATCTTTCTCTCTCTTTCTGTCTCCATGCTTCCCACTC
GCCCTCTTTCAAAGTACTTCTTTTCTTCTTTCGACCGCGGGGCCTATCAA
TCTCAACCGGTGACTCACGTCCACCTACCTCCCTCCCCTTCCTCCTTCCC
TCCCTCACCCCGTTCCTTCCTCAGGCCCTGGAGGCCCTCCTCCACGGCCG
GCCTCTTCTCGGCCGTGCCCTGACGTGCGACACCACCCTCGCGTCCCTTG
TGGCTTCTCTCCGAGAAAAGCTCTTCGTGAAGTACGGAGAAAAGGAGTGA
ACGGAGAGAGGGGAGGGCGGGAGGGAGGAATGGAGATTGAGAGGAAGGGC
ACGACGTGTAATTTGTAATGTGATGTAGATTGAAACGGTCAGCAGGGCAG
TAGAAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAACTAGAAGGGAGA
AGAAACAAATGACATTCGAAAAAGAGCGAACTGGGAAGAAAAGGTCAAAA
AATAGTTCCCCATAAAGTAGTAGAACAAGAAGCTGAAGGACCGGGGACCG
GTGGCCGGGGGCCTCAGGCCTTGTAGTTAACAGGGGGACAGGTAACAGGA
ACTCACTGCAGTTAGGGATGACACGGTAGCGGAGTGGTCCGTTGAAATGG
ATTATAGTGGTGGTAGGCAAGGAGGAGGGGGAGAAGGAAGAAGGGTGATT
GAGAAAAGAAATTTAATTTTTAAGACAGGGAGTGACAGTCATTAGCGATG
GCAGGGTCAGCAAAAAACAGAACAAAGAAAAGACAACAAGTATTGTTCCA
A
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Coding sequence (CDS) from alignment at chr13:874335..877835+

>NO13G03060.2 ID=NO13G03060.2|Name=NO13G03060.2|organism=Nannochloropsis oceanica|type=CDS|length=1686bp|location=Sequence derived from alignment at chr13:874335..877835+ (Nannochloropsis oceanica)
ATGGGTAACGGCAAGAAGAAGAACAAGAACAAGGGCAGCAAGATCCAGAA
GCCTATTTCAGGCCAAGTTCCGAGTGCCGCTGGGGGGATGACCCCTAGCA
CATCACCCACTAGTCTCTCCAAGGACACATCTGCAGCCGCGAAAAAGGCT
ACCGTGGAACCGCCCGTCATTTCCGCCATCCCGCCTGCCGATGTGGAAAA
AAAGGCGGACGAAGTGGTCACTCCTGCCTCTTTCGCCACCCGTGCTGTCC
CCTTGAAGCCAGAGAACGAGGGAGAAAAGGAGAGCAAGGAAGGGAATAGG
AAACCTGAGACTGGGGACCCGCGCGCTCCCACCCCATCGGACTCTACGCC
TTCCGCATCAAGCTCATCTTCGGATACTCCCAAGCCTGCCGAGGTCCCAA
CAGCACCGAACCTTACTCCTGCTTCCATCCCCCCTTCTTCTTCCTCCACC
ATTCACCCCCTGTCCTCCTCCTCCTCCTCTTCCTCGGAGACTGGAAGCAA
ACCGTCGCCGATGAAAAGCCTTACTAGCCACACAGCTGAAGAGATAGCAG
CCTTGCCCATTCCCCCTCCTTTGAGGGAGAGCGATGTCGGCGCGGCTACT
GCTGCTGCCGCCGCTGCAGAGAAGGAGGGAGGGATGGAGGATGGGGTTGA
CGATAGCTCAATTCGCCCGGCCAGCCCCTCGCATCTTCGGCCGGAGAGCA
CCAAAACCATGCTACAGGAGGGACAGTTCACCCTCAAGATGGTCGGGTCT
CGCCTTGCCACTCCTCCGGGAAGCGGAAGCTCCTACACAGAGTACATGGT
AAAGTGCTGCTGGGGCTTTGAGCCGGAACATGCCTTCTCCTGGATTGTCG
CTCATCGCTACTCCGACTTTGCTGCCCTCGACCTCGCCTTGCGTGCCGCG
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCCTTCCACCCAGGGAGCG
GTTTTGGGTGGACTCGAATGGGCCCGCGGTGGTGACCAAGCGGAGGAAGG
GCTTAGAGGAGTACCTCCTCCGCATCCTGTCCCACGTATCGGAAGCCCTT
CCCTCCCCCACCCTCGACGCCTTTTTCCACCTCACCGCCCGCATCGACCG
GATCAAGCAGACGCTCGGGCGACCTTCCCCGCCACCCTCCTCTCCTTCCT
TCTTTGCTTACAATAGCCCCATTCGAAGCACGCGCGCCCCCCCCTCCAAC
TCCGAGCAAGAGGGAGGGGGGGAAGGAGGGAAGGAAAGGGGGCGGGTCAT
CCTCCCTACCTACGTCCACAGTGTCGATCTGCGACGGCTTTCATCCACGG
CCGCCTACCTTGCCTACGAAACCAAGTCGATCTCGCCCCTGTCTGCTAAG
GGCCTGGCTACCCTCGAAGGGAAGGTGGGGAAGCTCCAGGCAGTATTGGA
CAAGATCGATGTCAAGAAGGACTTCATGGAGGACACCTACCTCTGCGACC
TTCTGAATGAGCTCATGCTCGACTGGCCGTCGCTCAAGGCGCTGACCAAC
ACCATCCAGGAGGAGGAAGGGGAGGAAGAGGAGGCAGGGGAAGAGAAAGA
GAAGGGCAAGGCCCTGGAGGCCCTCCTCCACGGCCGGCCTCTTCTCGGCC
GTGCCCTGACGTGCGACACCACCCTCGCGTCCCTTGTGGCTTCTCTCCGA
GAAAAGCTCTTCGTGAAGTACGGAGAAAAGGAGTGA
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Synonyms
Publications