NO13G03040, NO13G03040 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G03040
Unique Name	NO13G03040
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2669
Alignment location	chr13:852725..855393 +

Link to JBrowse

Properties


Property Name	Value
Description	Hbs1-like protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:852725..855393 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005525	GTP binding
GO:0005525	GTP binding
GO:0003924	GTPase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR009000	Transl_B-barrel
IPR009001	Transl_elong_EF1A/Init_IF2_C
IPR027417	P-loop_NTPase
IPR004160	Transl_elong_EFTu/EF1A_C
IPR000795	TF_GTP-bd_dom

Homology

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BLAST of NO13G03040 vs. NCBI_GenBank
Match: EWM21968.1 (hbs1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 792.7 bits (2046), Expect = 1.100e-225
Identity = 501/739 (67.79%), Postives = 548/739 (74.15%), Query Frame = 0

Query:  114 HPRLATISEAFDAELVDPAFHLIKGSGQADAFSDHRIRMAVRQANYDADAAMANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVTGRVGGVSLVRSRTPPARVRSASPGPGGMDDNGCEGVPT-PGDVVASRASLGGLSRDAGVWEEDVLPSAAPASSLPPSGSSGGLAFASEEDSGKEGGKGGELEKPRITMVVIGHVDAGKSTLMGQVLVATGLVSSREVRKYEREAREMGKASFYLAWLMDEDGEERVHGVTMEVGQKVIELPHRVLTLLDAPGHADFIPQMIMGAAQADVALLVVPATTGEFEAGFTEASNGRDGLGQGQTKEHALLARALGVTQLLVAINKLDVAEPPWSQSRYEDIVGALGPFLEQTGFKSERIRYVPVSGLTGENVK----EGGRDGGGPLGGWYTGPSLLTAMDEFLPATKSLREARSKPLRMVVNDYVPAGKNIGVSVRVLSGGVKAGSKVLILPIGDVATVRAIEVEGRGAETAQAGEHAELMLQGVDIARMSIGSVLCKGKAAVPVSRRFGAQITTLPSLGTPILRGTQFQLHLQSLEMPVNTTRLIATLHKPLSEEGMASAEIKQERPRCLTGGLLALVELRCQRPMCVERYDESRSLGRFILRQKGETVAVGMVTEILPD 848
            HPRLATISEAFDA+LVDPAFH+IK SGQ    SD +IR AVRQANYDAD A++           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                XXXXXXXXXXXXXXXXXXXXXXXX                            E+V  RV  V L R+  PP R +S SPG G  +D G EG     G+V+ASRASLGGLS+D  VWEEDVLPS                          +GG   E EK RI MVVIGHVDAGKSTLMGQVLV+TG+VS RE RK+ER+AR +GKASFYLAW+MDEDGEER HGVTMEVGQK IELPHRV+TLLDAPGHADF+PQMI+GAAQADVALLVVPATTGEFEAGF EA  GRDGL QGQTKEHALLARALGV QLLVA+NKLD A+PPWSQ+RY+DIV +L PFLEQTGFKSERIR+VPVSGLTGENVK           G L  WYTGPSLLTAMD+FLPA K LREAR KPLRM+VND  PAGKN+GVSVRVLSGGVK GSKVLILPIGDVA VR+IEVEG  AE A A EHAE+ LQGVD AR+SIGSVLCKGKAAVPVS RF AQITTL SL  PILRGT FQ+H+QSLE+PVN TRL ATL KPLSEEG  +AE+K+ERPRCLTG +LALVE +C RP+CVER+++SR LGRFILRQKGETVAVG+VT ILPD
Sbjct:   98 HPRLATISEAFDADLVDPAFHMIKESGQVGEMSDDQIRTAVRQANYDADVALS----------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSRVVTPSPSRLSSPEDGGRGGKGRGLTAGTEXXXXXXXXXXXXXXXXXXXXXXXXGNLLLGNQSRNNSSSNLSRPTGSNVGEVEEVASRVQSVHLSRASPPPPRFKSVSPGLGEGED-GYEGAQAGAGNVIASRASLGGLSKDPEVWEEDVLPS--------------------------KGGGEKEGEKARIAMVVIGHVDAGKSTLMGQVLVSTGMVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKCIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAEAGTGRDGLSQGQTKEHALLARALGVNQLLVAVNKLDAADPPWSQARYQDIVTSLTPFLEQTGFKSERIRFVPVSGLTGENVKXXXXXXXXXXXGGLREWYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVGVSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAILPD 799

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BLAST of NO13G03040 vs. NCBI_GenBank
Match: CBN76113.1 (HBS1, eRF3-like GTPase involved in mRNA [Ectocarpus siliculosus])

HSP 1 Score: 463.4 bits (1191), Expect = 1.500e-126
Identity = 233/448 (52.01%), Postives = 316/448 (70.54%), Query Frame = 0

Query:  396 KPRITMVVIGHVDAGKSTLMGQVLVATGLVSSREVRKYEREAREMGKASFYLAWLMDEDGEERVHGVTMEVGQKVIELPHRVLTLLDAPGHADFIPQMIMGAAQADVALLVVPATTGEFEAGFTEASNGRDGLGQGQTKEHALLARALGVTQLLVAINKLDVAEPPWSQSRYEDIVGALGPFLEQTGFKSERIRYVPVSGLTGENVKEGGRDGGGPLGGWYTGPSLLTAMDEFLPATKSLREARSKPLRMVVNDYVPAGKNIGVSVRVLSGGVKAGSKVLILPIGDVATVRAIEVEGRGAETAQAGEHAELMLQGVDIARMSIGSVLCKGKAAVPVSRRFGAQITTLPSLGTPILRGTQFQLHLQSLEMPVNTTRLIATLHKPLSEEGMASAEIKQERPRCLTGGLLALVELRCQRPMCVERYDESRSLGRFILRQKGETVAVGMVTE 844
            K R+ MVVIGHVDAGKSTLMGQVLV  G V+ R + K E+EARE GKASF+LAW+MDED EER HGVT+EV QK IE   +++TLLDAPGH DFIP+MI GA+ AD A+LVVPA  GEFE+GF            GQTKEHA+LA+ALGV QLLV +NKLD  +PPWS++RYE +   +GPFL +TGF+ +++R++P SGL+ ENV +  R  GGPL  WY GP+LL A+D F  A +    A  K  RM V D   +GK + VS RV+ G +++G KV+++P+ D AT   +E  G  A TA+AG++AE+ L GVD +R+ +G+V+CK    +PV RRF AQI  LP+L  PI++GT+FQLH+ +L++ V+ ++L++  +         +  + + RPRC+  G  A + + CQRP+C+E+Y + R+LGRF+LRQKG TVAVG+V +
Sbjct:  365 KERLAMVVIGHVDAGKSTLMGQVLVQMGQVTQRALHKQEKEAREAGKASFFLAWVMDEDQEERAHGVTIEVAQKHIETETKLVTLLDAPGHRDFIPKMISGASAADAAVLVVPAAVGEFESGFQ---------ANGQTKEHAMLAKALGVNQLLVVVNKLDATDPPWSEARYEAVKAEVGPFLARTGFRPKKVRFLPASGLSAENVSK--RTEGGPLSSWYDGPTLLEAIDSFQAAPR----ATDKAFRMCVADVTSSGKGVSVSGRVVQGRLRSGDKVVVMPLEDPATAARLERNGAPARTARAGDNAEVTLSGVDPSRVVVGNVVCKAGGVLPVVRRFNAQIVALPALEVPIIKGTEFQLHMHNLDVMVHCSKLVSLTN--------TAGTVLKARPRCVPTGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLVLD 789

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BLAST of NO13G03040 vs. NCBI_GenBank
Match: OQR98185.1 (translation elongation factor 1-alpha [Achlya hypogyna])

HSP 1 Score: 392.9 bits (1008), Expect = 2.500e-105
Identity = 209/456 (45.83%), Postives = 302/456 (66.23%), Query Frame = 0

Query:  396 KPRITMVVIGHVDAGKSTLMGQVLVATGLVSSREVRKYEREAREMGKASFYLAWLMDEDGEERVHGVTMEVGQKVIELPHRVLTLLDAPGHADFIPQMIMGAAQADVALLVVPATTGEFEAGFTEASNGRDGLGQGQTKEHALLARALGVTQLLVAINKLDVAEPPWSQSRYEDIVGALGPFLEQTGFKSERIRYVPVSGLTGENVKEGGRDGGGPLGG----WYTGPSLLTAMDEFLPATKSLREARSKPLRMVVNDYVPAGKNIG--VSVRVLSGGVKAGSKVLILPIGDVATVRAIEVEGRGAETAQAGEHAELMLQGVDIARMSIGSVLCKGKAAVPVSRRFGAQITTLPSLGTPILRGTQFQLHLQSLEMPVNTTRLIATLHKPLSEEGMASAEIKQERPRCLTGGLLALVELRCQRPMCVERYDESRSLGRFILRQKGETVAVGMVTEIL 846
            K +I+MVVIGHVDAGKST+ G +L + G VS + + KYE+++RE GK+SF  AW+MD D EER+ GVTM+VG    + P + +TLLDAPGH DFIP+MI GA+QADVA+LVVPA TGEFE  F         +  GQTKEH LL R+LGVTQL+VA+NK+D     WS+ R++ IV  L  FL+Q+GFK E++R+VPVSGL+G N+         PL      WYTGP+L+ A+D F P  + +    +KP RM ++D +    ++G  VS R+ +G V  G  +L++P G   TV+ +E  G     A AG++ +L + G+D + +S+G++LC   + + + RRF AQI T+P++  P+++G     H+ S++ PVN TRL++ L K        S E+++++PRC+T    A+V++ CQRP+C+E + + R LGRF LR +G T+A G+VTEIL
Sbjct:  200 KHKISMVVIGHVDAGKSTITGHLLFSLGYVSKQVMHKYEKQSREAGKSSFAFAWVMDADEEERLRGVTMDVGTSYFQTPTKHVTLLDAPGHRDFIPKMIAGASQADVAVLVVPAATGEFEGAF---------MKDGQTKEHTLLVRSLGVTQLIVAVNKMDAV--AWSKDRFDFIVETLTAFLQQSGFKLEQLRFVPVSGLSGGNLI-------APLPAADCTWYTGPTLVGAIDGFYPPQRPI----TKPFRMGISD-ISKSMSLGQTVSGRIYTGAVSTGDTLLLMPGGLRLTVKGMEQNGGSITMASAGDNVDLGVTGIDPSALSVGNILCSIASPIKLVRRFEAQIMTMPAVEVPLVKGAYMTFHVHSIDEPVNITRLVSILKK--------SGEVEKKKPRCITRNCSAVVQITCQRPICLELFADFRQLGRFTLRDRGSTLAAGIVTEIL 624

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BLAST of NO13G03040 vs. NCBI_GenBank
Match: OQR95724.1 (translation elongation factor 1-alpha [Thraustotheca clavata])

HSP 1 Score: 390.2 bits (1001), Expect = 1.600e-104
Identity = 206/452 (45.58%), Postives = 301/452 (66.59%), Query Frame = 0

Query:  396 KPRITMVVIGHVDAGKSTLMGQVLVATGLVSSREVRKYEREAREMGKASFYLAWLMDEDGEERVHGVTMEVGQKVIELPHRVLTLLDAPGHADFIPQMIMGAAQADVALLVVPATTGEFEAGFTEASNGRDGLGQGQTKEHALLARALGVTQLLVAINKLDVAEPPWSQSRYEDIVGALGPFLEQTGFKSERIRYVPVSGLTGENVKEGGRDGGGPLGGWYTGPSLLTAMDEFLPATKSLREARSKPLRMVVNDYVPAGKNIG--VSVRVLSGGVKAGSKVLILPIGDVATVRAIEVEGRGAETAQAGEHAELMLQGVDIARMSIGSVLCKGKAAVPVSRRFGAQITTLPSLGTPILRGTQFQLHLQSLEMPVNTTRLIATLHKPLSEEGMASAEIKQERPRCLTGGLLALVELRCQRPMCVERYDESRSLGRFILRQKGETVAVGMVTEIL 846
            K +I+MVVIGHVDAGKST+ G +L + G VS + + KYE+++RE GK+SF  AW+MD D EER+ GVTM+VG    +   + +TLLDAPGH DFIP+MI GA+QADVA+LVVPA+TGEFE  F         +  GQTKEH LL R+LGVTQ++VA+NK+D     WS+ R++ IV  L  FL+Q+GFK E++R+VPVSGLTG N+         P   WYTGP+L+ A+D F P  + +    +KP RM ++D +    ++G  VS R+ +G V  G  +L++P G   +V+ +E  G     A AG++ +L + G+D + +S+G++LC   A + + RRF AQI T+P++  P+++G     H+ S++ PVN TRL++ L K        S E+++++PRC+T    A+V++ CQRP+C+E + + R LGRF LR +G T+A G+VT+IL
Sbjct:  200 KQKISMVVIGHVDAGKSTITGHLLFSLGYVSKQVMHKYEKQSREAGKSSFAFAWVMDADEEERLRGVTMDVGTTYFQTTTKHVTLLDAPGHRDFIPKMIAGASQADVAVLVVPASTGEFEGAF---------MKDGQTKEHTLLVRSLGVTQMIVAVNKMDSVN--WSKDRFDFIVETLSGFLQQSGFKLEQLRFVPVSGLTGGNLLTKLPPTDCP---WYTGPTLVGAIDGFYPPQRPI----TKPFRMGISD-ISKSMSLGQTVSGRIYTGAVSTGDMLLLMPGGLRLSVKGMEQNGGSITMASAGDNVDLGITGIDPSALSVGNILCSIVAPIKLVRRFEAQIMTMPAVEVPLVKGAYMTFHIHSIDEPVNITRLVSILKK--------SGEVEKKKPRCITRNCSAVVQITCQRPICLELFADFRQLGRFTLRDRGSTLAAGIVTDIL 624

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BLAST of NO13G03040 vs. NCBI_GenBank
Match: ETI40972.1 (translation elongation factor Tu [Phytophthora parasitica P1569] >ETL87747.1 translation elongation factor Tu [Phytophthora parasitica] >ETP38895.1 translation elongation factor Tu [Phytophthora parasitica P10297])

HSP 1 Score: 388.3 bits (996), Expect = 6.300e-104
Identity = 204/466 (43.78%), Postives = 307/466 (65.88%), Query Frame = 0

Query:  382 EDSGKEGGKGGELEKPRITMVVIGHVDAGKSTLMGQVLVATGLVSSREVRKYEREAREMGKASFYLAWLMDEDGEERVHGVTMEVGQKVIELPHRVLTLLDAPGHADFIPQMIMGAAQADVALLVVPATTGEFEAGFTEASNGRDGLGQGQTKEHALLARALGVTQLLVAINKLDVAEPPWSQSRYEDIVGALGPFLEQTGFKSERIRYVPVSGLTGENVKEGGRDGGGPLGGWYTGPSLLTAMDEFLPATKSLREARSKPLRMVVNDYVPAGKNIG--VSVRVLSGGVKAGSKVLILPIGDVATVRAIEVEGRGAETAQAGEHAELMLQGVDIARMSIGSVLCKGKAAVPVSRRFGAQITTLPSLGTPILRGTQFQLHLQSLEMPVNTTRLIATLHKPLSEEGMASAEIKQERPRCLTGGLLALVELRCQRPMCVERYDESRSLGRFILRQKGETVAVGMVTEIL 846
            E+  + GG      K +I+MVVIGHVDAGKST+ G +L   G VS R + KYE+E+RE GK+SF  AW+MD D EER  GVTM+VG    E   + +TLLDAPGH DFIP+MI GAAQADVA+LVVPA TGEFEA F  +         GQTKEH LL R+LGV+Q++VA+NK+D+    W + R+++IV +L  FL+  GF+ + +R+VP+SG+TG N++   + GG     WY+GPSL+ A+D F P  + +    SKP RM V+D V    ++G  +S RV +G    G   L++PIG   TV+ +E +G+    A+AG+  E+ + G+D + ++ GS+LC   + V ++++F A+I T+P++  P+++GT   +H+ +++ PVN TRL++ L K        + E+++++PRC+T    A+V++ C R +C+E +   R LGRF LR +G+T+A G++T+I+
Sbjct:  226 EEEARTGG------KTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENS---------GQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNIVTSLSMFLQGAGFRPKNLRFVPLSGMTGANLE---KTGGVKECSWYSGPSLVEAIDTFAPPQRQI----SKPFRMTVSD-VSKSMSLGQTISGRVYAGAAAVGDSFLLMPIGLTLTVKGMEQDGKSCTLARAGDTIEMGVTGIDPSALTTGSILCSIASPVQLAKKFEAKIMTMPAVEVPLVKGTYVTIHMHNVDEPVNITRLVSMLSK--------TGEVEKKKPRCITRERSAVVQITCHRKICLEEFANYRQLGRFTLRDRGKTLAAGIITQII 658

[Close]

BLAST of NO13G03040 vs. NCBI_GenBank
Match: ETK81076.1 (translation elongation factor Tu [Phytophthora parasitica] >ETL34494.1 translation elongation factor Tu [Phytophthora parasitica] >ETP10753.1 translation elongation factor Tu [Phytophthora parasitica CJ01A1])

HSP 1 Score: 388.3 bits (996), Expect = 6.300e-104
Identity = 204/466 (43.78%), Postives = 307/466 (65.88%), Query Frame = 0

Query:  382 EDSGKEGGKGGELEKPRITMVVIGHVDAGKSTLMGQVLVATGLVSSREVRKYEREAREMGKASFYLAWLMDEDGEERVHGVTMEVGQKVIELPHRVLTLLDAPGHADFIPQMIMGAAQADVALLVVPATTGEFEAGFTEASNGRDGLGQGQTKEHALLARALGVTQLLVAINKLDVAEPPWSQSRYEDIVGALGPFLEQTGFKSERIRYVPVSGLTGENVKEGGRDGGGPLGGWYTGPSLLTAMDEFLPATKSLREARSKPLRMVVNDYVPAGKNIG--VSVRVLSGGVKAGSKVLILPIGDVATVRAIEVEGRGAETAQAGEHAELMLQGVDIARMSIGSVLCKGKAAVPVSRRFGAQITTLPSLGTPILRGTQFQLHLQSLEMPVNTTRLIATLHKPLSEEGMASAEIKQERPRCLTGGLLALVELRCQRPMCVERYDESRSLGRFILRQKGETVAVGMVTEIL 846
            E+  + GG      K +I+MVVIGHVDAGKST+ G +L   G VS R + KYE+E+RE GK+SF  AW+MD D EER  GVTM+VG    E   + +TLLDAPGH DFIP+MI GAAQADVA+LVVPA TGEFEA F  +         GQTKEH LL R+LGV+Q++VA+NK+D+    W + R+++IV +L  FL+  GF+ + +R+VP+SG+TG N++   + GG     WY+GPSL+ A+D F P  + +    SKP RM V+D V    ++G  +S RV +G    G   L++PIG   TV+ +E +G+    A+AG+  E+ + G+D + ++ GS+LC   + V ++++F A+I T+P++  P+++GT   +H+ +++ PVN TRL++ L K        + E+++++PRC+T    A+V++ C R +C+E +   R LGRF LR +G+T+A G++T+I+
Sbjct:  226 EEEARTGG------KTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENS---------GQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNIVTSLSMFLQGAGFRPKNLRFVPLSGMTGANLE---KTGGVKECSWYSGPSLVEAIDTFAPPQRQI----SKPFRMTVSD-VSKSMSLGQTISGRVYAGAAAVGDSFLLMPIGLTLTVKGMEQDGKSCTLARAGDTIEMGVTGIDPSALTTGSILCSIASPVQLAKKFEAKIMTMPAVEVPLVKGTYVTIHMHNVDEPVNITRLVSMLSK--------TGEVEKKKPRCITRERSAVVQITCHRKICLEEFANYRQLGRFTLRDRGKTLAAGIITQII 658

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BLAST of NO13G03040 vs. NCBI_GenBank
Match: XP_008894609.1 (translation elongation factor Tu [Phytophthora parasitica INRA-310] >ETN20747.1 translation elongation factor Tu [Phytophthora parasitica INRA-310])

HSP 1 Score: 388.3 bits (996), Expect = 6.300e-104
Identity = 204/466 (43.78%), Postives = 307/466 (65.88%), Query Frame = 0

Query:  382 EDSGKEGGKGGELEKPRITMVVIGHVDAGKSTLMGQVLVATGLVSSREVRKYEREAREMGKASFYLAWLMDEDGEERVHGVTMEVGQKVIELPHRVLTLLDAPGHADFIPQMIMGAAQADVALLVVPATTGEFEAGFTEASNGRDGLGQGQTKEHALLARALGVTQLLVAINKLDVAEPPWSQSRYEDIVGALGPFLEQTGFKSERIRYVPVSGLTGENVKEGGRDGGGPLGGWYTGPSLLTAMDEFLPATKSLREARSKPLRMVVNDYVPAGKNIG--VSVRVLSGGVKAGSKVLILPIGDVATVRAIEVEGRGAETAQAGEHAELMLQGVDIARMSIGSVLCKGKAAVPVSRRFGAQITTLPSLGTPILRGTQFQLHLQSLEMPVNTTRLIATLHKPLSEEGMASAEIKQERPRCLTGGLLALVELRCQRPMCVERYDESRSLGRFILRQKGETVAVGMVTEIL 846
            E+  + GG      K +I+MVVIGHVDAGKST+ G +L   G VS R + KYE+E+RE GK+SF  AW+MD D EER  GVTM+VG    E   + +TLLDAPGH DFIP+MI GAAQADVA+LVVPA TGEFEA F  +         GQTKEH LL R+LGV+Q++VA+NK+D+    W + R+++IV +L  FL+  GF+ + +R+VP+SG+TG N++   + GG     WY+GPSL+ A+D F P  + +    SKP RM V+D V    ++G  +S RV +G    G   L++PIG   TV+ +E +G+    A+AG+  E+ + G+D + ++ GS+LC   + V ++++F A+I T+P++  P+++GT   +H+ +++ PVN TRL++ L K        + E+++++PRC+T    A+V++ C R +C+E +   R LGRF LR +G+T+A G++T+I+
Sbjct:  227 EEEARTGG------KTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENS---------GQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNIVTSLSMFLQGAGFRPKNLRFVPLSGMTGANLE---KTGGVKECSWYSGPSLVEAIDTFAPPQRQI----SKPFRMTVSD-VSKSMSLGQTISGRVYAGAAAVGDSFLLMPIGLTLTVKGMEQDGKSCTLARAGDTIEMGVTGIDPSALTTGSILCSIASPVQLAKKFEAKIMTMPAVEVPLVKGTYVTIHMHNVDEPVNITRLVSMLSK--------TGEVEKKKPRCITRERSAVVQITCHRKICLEEFANYRQLGRFTLRDRGKTLAAGIITQII 659

[Close]

BLAST of NO13G03040 vs. NCBI_GenBank
Match: ETO69645.1 (translation elongation factor Tu [Phytophthora parasitica P1976])

HSP 1 Score: 388.3 bits (996), Expect = 6.300e-104
Identity = 204/466 (43.78%), Postives = 307/466 (65.88%), Query Frame = 0

Query:  382 EDSGKEGGKGGELEKPRITMVVIGHVDAGKSTLMGQVLVATGLVSSREVRKYEREAREMGKASFYLAWLMDEDGEERVHGVTMEVGQKVIELPHRVLTLLDAPGHADFIPQMIMGAAQADVALLVVPATTGEFEAGFTEASNGRDGLGQGQTKEHALLARALGVTQLLVAINKLDVAEPPWSQSRYEDIVGALGPFLEQTGFKSERIRYVPVSGLTGENVKEGGRDGGGPLGGWYTGPSLLTAMDEFLPATKSLREARSKPLRMVVNDYVPAGKNIG--VSVRVLSGGVKAGSKVLILPIGDVATVRAIEVEGRGAETAQAGEHAELMLQGVDIARMSIGSVLCKGKAAVPVSRRFGAQITTLPSLGTPILRGTQFQLHLQSLEMPVNTTRLIATLHKPLSEEGMASAEIKQERPRCLTGGLLALVELRCQRPMCVERYDESRSLGRFILRQKGETVAVGMVTEIL 846
            E+  + GG      K +I+MVVIGHVDAGKST+ G +L   G VS R + KYE+E+RE GK+SF  AW+MD D EER  GVTM+VG    E   + +TLLDAPGH DFIP+MI GAAQADVA+LVVPA TGEFEA F  +         GQTKEH LL R+LGV+Q++VA+NK+D+    W + R+++IV +L  FL+  GF+ + +R+VP+SG+TG N++   + GG     WY+GPSL+ A+D F P  + +    SKP RM V+D V    ++G  +S RV +G    G   L++PIG   TV+ +E +G+    A+AG+  E+ + G+D + ++ GS+LC   + V ++++F A+I T+P++  P+++GT   +H+ +++ PVN TRL++ L K        + E+++++PRC+T    A+V++ C R +C+E +   R LGRF LR +G+T+A G++T+I+
Sbjct:  226 EEEARTGG------KTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENS---------GQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNIVTSLSMFLQGAGFRPKNLRFVPLSGMTGANLE---KTGGVKECSWYSGPSLVEAIDTFAPPQRQI----SKPFRMTVSD-VSKSMSLGQTISGRVYAGAAAVGDSFLLMPIGLTLTVKGMEQDGKSCTLARAGDTIEMGVTGIDPSALTTGSILCSIASPVQLAKKFEAKIMTMPAVEVPLVKGTYVTIHMHNVDEPVNITRLVSMLSK--------TGEVEKKKPRCITRERSAVVQITCHRKICLEEFANYRQLGRFTLRDRGKTLAAGIITQII 658

[Close]

BLAST of NO13G03040 vs. NCBI_GenBank
Match: KUF84470.1 (HBS1 protein [Phytophthora nicotianae])

HSP 1 Score: 388.3 bits (996), Expect = 6.300e-104
Identity = 204/466 (43.78%), Postives = 307/466 (65.88%), Query Frame = 0

Query:  382 EDSGKEGGKGGELEKPRITMVVIGHVDAGKSTLMGQVLVATGLVSSREVRKYEREAREMGKASFYLAWLMDEDGEERVHGVTMEVGQKVIELPHRVLTLLDAPGHADFIPQMIMGAAQADVALLVVPATTGEFEAGFTEASNGRDGLGQGQTKEHALLARALGVTQLLVAINKLDVAEPPWSQSRYEDIVGALGPFLEQTGFKSERIRYVPVSGLTGENVKEGGRDGGGPLGGWYTGPSLLTAMDEFLPATKSLREARSKPLRMVVNDYVPAGKNIG--VSVRVLSGGVKAGSKVLILPIGDVATVRAIEVEGRGAETAQAGEHAELMLQGVDIARMSIGSVLCKGKAAVPVSRRFGAQITTLPSLGTPILRGTQFQLHLQSLEMPVNTTRLIATLHKPLSEEGMASAEIKQERPRCLTGGLLALVELRCQRPMCVERYDESRSLGRFILRQKGETVAVGMVTEIL 846
            E+  + GG      K +I+MVVIGHVDAGKST+ G +L   G VS R + KYE+E+RE GK+SF  AW+MD D EER  GVTM+VG    E   + +TLLDAPGH DFIP+MI GAAQADVA+LVVPA TGEFEA F  +         GQTKEH LL R+LGV+Q++VA+NK+D+    W + R+++IV +L  FL+  GF+ + +R+VP+SG+TG N++   + GG     WY+GPSL+ A+D F P  + +    SKP RM V+D V    ++G  +S RV +G    G   L++PIG   TV+ +E +G+    A+AG+  E+ + G+D + ++ GS+LC   + V ++++F A+I T+P++  P+++GT   +H+ +++ PVN TRL++ L K        + E+++++PRC+T    A+V++ C R +C+E +   R LGRF LR +G+T+A G++T+I+
Sbjct:  191 EEEARTGG------KTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENS---------GQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNIVTSLSMFLQGAGFRPKNLRFVPLSGMTGANLE---KTGGVKECSWYSGPSLVEAIDTFAPPQRQI----SKPFRMTVSD-VSKSMSLGQTISGRVYAGAAAVGDSFLLMPIGLTLTVKGMEQDGKSCTLARAGDTIEMGVTGIDPSALTTGSILCSIASPVQLAKKFEAKIMTMPAVEVPLVKGTYVTIHMHNVDEPVNITRLVSMLSK--------TGEVEKKKPRCITRERSAVVQITCHRKICLEEFANYRQLGRFTLRDRGKTLAAGIITQII 623

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BLAST of NO13G03040 vs. NCBI_GenBank
Match: ETM40994.1 (translation elongation factor Tu [Phytophthora parasitica])

HSP 1 Score: 387.1 bits (993), Expect = 1.400e-103
Identity = 204/466 (43.78%), Postives = 306/466 (65.67%), Query Frame = 0

Query:  382 EDSGKEGGKGGELEKPRITMVVIGHVDAGKSTLMGQVLVATGLVSSREVRKYEREAREMGKASFYLAWLMDEDGEERVHGVTMEVGQKVIELPHRVLTLLDAPGHADFIPQMIMGAAQADVALLVVPATTGEFEAGFTEASNGRDGLGQGQTKEHALLARALGVTQLLVAINKLDVAEPPWSQSRYEDIVGALGPFLEQTGFKSERIRYVPVSGLTGENVKEGGRDGGGPLGGWYTGPSLLTAMDEFLPATKSLREARSKPLRMVVNDYVPAGKNIG--VSVRVLSGGVKAGSKVLILPIGDVATVRAIEVEGRGAETAQAGEHAELMLQGVDIARMSIGSVLCKGKAAVPVSRRFGAQITTLPSLGTPILRGTQFQLHLQSLEMPVNTTRLIATLHKPLSEEGMASAEIKQERPRCLTGGLLALVELRCQRPMCVERYDESRSLGRFILRQKGETVAVGMVTEIL 846
            E+  + GG      K +I+MVVIGHVDAGKST+ G +L   G VS R + KYE+E+RE GK+SF  AW+MD D EER  GVTM+VG    E   + +TLLDAPGH DFIP+MI GAAQADVA+LVVPA TGEFEA F  +         GQTKEH LL R+LGV+Q++VA+NK+D+    W + R+++IV +L  FL+  GF+ + +R+VP+SG+TG N++   + GG     WY+GPSL+ A+D F P  + +    SKP RM V+D V    ++G  +S RV +G    G   L++PIG   TV+ +E +G+    A+AG+  E+ + G+D + +  GS+LC   + V ++++F A+I T+P++  P+++GT   +H+ +++ PVN TRL++ L K        + E+++++PRC+T    A+V++ C R +C+E +   R LGRF LR +G+T+A G++T+I+
Sbjct:  191 EEEARTGG------KTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENS---------GQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNIVTSLSMFLQGAGFRPKNLRFVPLSGMTGANLE---KTGGVKECSWYSGPSLVEAIDTFAPPQRQI----SKPFRMTVSD-VSKSMSLGQTISGRVYAGAAAVGDSFLLMPIGLTLTVKGMEQDGKSCTLARAGDTIEMGVTGIDPSALITGSILCSIASPVQLAKKFEAKIMTMPAVEVPLVKGTYVTIHMHNVDEPVNITRLVSMLSK--------TGEVEKKKPRCITRERSAVVQITCHRKICLEEFANYRQLGRFTLRDRGKTLAAGIITQII 623

The following BLAST results are available for this feature:

BLAST of NO13G03040 vs. NCBI_GenBank

BLAST of NO13G03040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM21968.1	1.100e-225	67.79	hbs1-like protein [Nannochloropsis gaditana]	[more]
CBN76113.1	1.500e-126	52.01	HBS1, eRF3-like GTPase involved in mRNA [Ectocarpu...	[more]
OQR98185.1	2.500e-105	45.83	translation elongation factor 1-alpha [Achlya hypo...	[more]
OQR95724.1	1.600e-104	45.58	translation elongation factor 1-alpha [Thraustothe...	[more]
ETI40972.1	6.300e-104	43.78	translation elongation factor Tu [Phytophthora par...	[more]
ETK81076.1	6.300e-104	43.78	translation elongation factor Tu [Phytophthora par...	[more]
XP_008894609.1	6.300e-104	43.78	translation elongation factor Tu [Phytophthora par...	[more]
ETO69645.1	6.300e-104	43.78	translation elongation factor Tu [Phytophthora par...	[more]
KUF84470.1	6.300e-104	43.78	HBS1 protein [Phytophthora nicotianae]	[more]
ETM40994.1	1.400e-103	43.78	translation elongation factor Tu [Phytophthora par...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL134	nonsL134	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR048	ncniR048	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR070	ngnoR070	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK001584	NSK001584	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO13G03040.1	NO13G03040.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604848	gene_9004	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100326g3	gene8465	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO13G03040.1	NO13G03040.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO13G03040 ID=NO13G03040|Name=NO13G03040|organism=Nannochloropsis oceanica|type=gene|length=2669bp
ATGTCCCGGCACCGCGCCATCCGCAACCGGGCCTACAGCTACGATGACGA
CTATGACGACTACGGCTACGACGACGAGGAAGAAGAGAATGAGGAGGCAA
TGGAGGGGACACAAGCGTACCGCTATGGCCAGCAGCACCACCAGGACGAG
CAGGAGGGTCAGGAGGGCGCGATACCCACACGGCAAGCCTCCCTGTCCTC
ATTTCTCGACCACGCCACCGCGCAACACCAGGCCCCTACTGCTCCCATTC
CTCAACGGGCTCGTCCACCTCCACCCTCGTCCAAGCATCACCATCACCAA
CCCCATCCCCACGGGCACCACGACGAGGACGATGCAGCCCACCCGCGCCT
TGCCACCATTTCTGAGGCCTTTGATGCCGAGCTCGTCGACCCCGCCTTCC
ACCTCATCAAAGGCAGTGGACAAGCCGATGCCTTCTCCGACCATCGCATC
CGAATGGCTGTGCGTCAAGCTAATTATGATGCGGACGCCGCCATGGCGAA
CCTACTTCTCCATTCCTCCTCCACCTCCTGCGCCTCCTCCACCGCCTCCT
CCTCCCTTCCTGCCTCCGTCGTCTCCTCCCGCGGAACTACTCCCTCCCCT
CCTCCACGGCCAATATCACCTTCGATGACCACTGGAGGAGCAGCGGCAGC
AATTGTATCAGCAGCAGCAACAACAACAACAACAGCAGCCTCCATAATGA
ACTCCCCCCCTCCCCCCCTCCCTCCCGGCCACCTCGTCCGTCCCTCCCCG
CAACGGCGCTCCAGCGCCGCCGGGCTTGCAATAAGCAGTAATAACAGTGT
CAACAGCAGCGATAGGGGTGGCGATGGGAGCCGTGTTGGGAGCCGGAACA
ACAGCAGCAATAATCTCTTGGAGGATGTGACGGGGAGGGTGGGCGGGGTG
AGTCTCGTCCGTTCACGCACCCCTCCTGCACGGGTTCGGAGTGCCTCTCC
CGGTCCTGGAGGGATGGATGATAATGGTTGTGAGGGTGTCCCCACGCCTG
GGGATGTGGTGGCGTCGCGGGCGTCGCTTGGGGGGCTGTCGAGAGACGCG
GGCGTTTGGGAGGAGGACGTGCTCCCTTCCGCGGCGCCTGCGTCCTCTCT
CCCGCCCTCCGGTTCTTCAGGTGGCCTTGCCTTTGCTTCTGAGGAGGATA
GTGGGAAAGAAGGGGGGAAGGGAGGAGAGCTGGAAAAGCCACGGATTACG
ATGGTAGTGATTGGGCATGTGGACGCGGGAAAGTCAACGTTAATGGGACA
AGTCTTGGTTGCCACTGGCTTGGTCTCCTCGCGGGAGGTCCGGAAGTACG
AACGCGAAGCCCGGGAAATGGGCAAGGCCTCCTTTTACCTCGCATGGTTG
ATGGACGAGGATGGGGAGGAGCGGGTCCATGGGGTCACCATGGAGGTGGG
CCAAAAAGTCATCGAGCTCCCACATCGTGTTTTGACCCTTTTAGgtccgt
gaggagggagcgatgagagggagggagggagggagggaagggggggagag
ggaggggggaaagtttaattcatataccattaatttccttgtttgaacac
aatccacacacattagACGCGCCGGGCCACGCGGATTTTATTCCCCAAAT
GATCATGGGTGCAGCACAAGCAGACGTAGCCTTGCTGGTTGTCCCCGCGA
CCACGGGGGAGTTTGAAGCCGGGTTCACAGAGGCCAGCAATGGGCGGGAT
GGTCTAGGGCAGGGACAGACGAAGGAACATGCTCTCTTGGCGCGGGCCCT
TGGCGTGACTCAGTTGTTGGTCGCCATTAATAAGTTGGATGTAGCGGAGC
CTCCCTGGTCACAGAGCCGGTACGAAGATATAGTCGGCGCGTTGGGGCCG
TTTCTGGAACAAACGGGGTTTAAGTCTGAACGGATTCGGTATGTCCCTGT
GAGTGGCCTAACGGGCGAGAATGTCAAGGAGGGAGGGAGGGATGGAGGGG
GGCCGCTGGGGGGATGGTACACGGGACCCTCGCTCTTGACGGCCATGGAC
GAATTCTTGCCCGCGACCAAGTCTTTGCGCGAAGCCCGAAGCAAGCCGTT
GCGGATGGTGGTAAACGATTATGTACCGGCGGGGAAGAATATAGGGGTTT
CCGTGCGGGTGCTCTCGGGAGGGGTGAAGGCTGGGAGTAAGGTTCTGATT
TTGCCGATTGGGGATGTAGCGACGGTGCGCGCGATTGAAGTGGAAGGCCG
TGGGGCTGAGACCGCTCAGGCCGGGGAGCACGCCGAACTGATGCTGCAAG
GCGTGGATATTGCGCGTATGTCGATAGGGAGTGTGTTGTGTAAAGGGAAG
GCGGCCGTGCCTGTCTCTCGGCGATTCGGCGCGCAGATAACGACCTTGCC
GTCATTAGGGACCCCAATACTAAGGGGTACTCAGTTTCAATTGCATTTGC
AGAGTCTGGAGATGCCTGTGAATACCACGCGGCTGATCGCGACATTGCAC
AAGCCCTTGTCGGAAGAGGGGATGGCCTCGGCGGAGATAAAGCAGGAGCG
ACCGCGGTGTCTGACTGGGGGTTTATTGGCACTGGTGGAATTAAGGTGTC
AGCGGCCCATGTGTGTGGAGCGGTACGACGAGTCGCGCTCGCTGGGTCGG
TTTATTTTGCGACAGAAGGGCGAGACGGTAGCCGTAGGTATGGTCACAGA
GATTCTCCCGGACACATGA

protein sequence of NO13G03040.1

>NO13G03040.1-protein ID=NO13G03040.1-protein|Name=NO13G03040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=849bp
MSRHRAIRNRAYSYDDDYDDYGYDDEEEENEEAMEGTQAYRYGQQHHQDE
QEGQEGAIPTRQASLSSFLDHATAQHQAPTAPIPQRARPPPPSSKHHHHQ
PHPHGHHDEDDAAHPRLATISEAFDAELVDPAFHLIKGSGQADAFSDHRI
RMAVRQANYDADAAMANLLLHSSSTSCASSTASSSLPASVVSSRGTTPSP
PPRPISPSMTTGGAAAAIVSAAATTTTTAASIMNSPPPPLPPGHLVRPSP
QRRSSAAGLAISSNNSVNSSDRGGDGSRVGSRNNSSNNLLEDVTGRVGGV
SLVRSRTPPARVRSASPGPGGMDDNGCEGVPTPGDVVASRASLGGLSRDA
GVWEEDVLPSAAPASSLPPSGSSGGLAFASEEDSGKEGGKGGELEKPRIT
MVVIGHVDAGKSTLMGQVLVATGLVSSREVRKYEREAREMGKASFYLAWL
MDEDGEERVHGVTMEVGQKVIELPHRVLTLLDAPGHADFIPQMIMGAAQA
DVALLVVPATTGEFEAGFTEASNGRDGLGQGQTKEHALLARALGVTQLLV
AINKLDVAEPPWSQSRYEDIVGALGPFLEQTGFKSERIRYVPVSGLTGEN
VKEGGRDGGGPLGGWYTGPSLLTAMDEFLPATKSLREARSKPLRMVVNDY
VPAGKNIGVSVRVLSGGVKAGSKVLILPIGDVATVRAIEVEGRGAETAQA
GEHAELMLQGVDIARMSIGSVLCKGKAAVPVSRRFGAQITTLPSLGTPIL
RGTQFQLHLQSLEMPVNTTRLIATLHKPLSEEGMASAEIKQERPRCLTGG
LLALVELRCQRPMCVERYDESRSLGRFILRQKGETVAVGMVTEILPDT*

Synonyms

Publications