NO13G02960, NO13G02960 (gene) Nannochloropsis oceanica

Overview
NameNO13G02960
Unique NameNO13G02960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2803
Alignment locationchr13:827131..829933 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:827131..829933 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G02960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001593NSK001593Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02960.1NO13G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673816gene_9011Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02960.1NO13G02960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02960 ID=NO13G02960|Name=NO13G02960|organism=Nannochloropsis oceanica|type=gene|length=2803bp
ATGTGGCTGTCGAGACTGGCGGTAGCCAGGTCGGTTCTGGGGGTGGTTAG
ATTGCTGGAGCCTGCAGCAGTGGAAGGAGCAGCAGGAGCAGGCGGGGAGC
AGCGACAGCAGCAGCAGAAGGAGAGAGGGGTAGCGGTGGTAGAGTGGCAA
CGGCAGCCGCGTCTGCTTTTGTTGCGGGCCACGGCTGACGTCGCGGAGGG
GAGAAAGGAGAGAAAGAATGAGAGAGAGAGGGAAGGAGGGGCAACGGATG
CGGCGCTGCGGTCGCTGTTGCCCAAAGTGACGAATTACATTTTGGAAATG
ACAACCACGAGAACTGCGCAGCACCAGCAGCAGCAGCAGCAGCAGACAGG
ACGCATGGGAGGGAAAGCTAGTGAGACGCAGCGGCAGGAAAAGCAGCAGC
AGCAGCAGCAACAGCAGATTGAGGGAGGGCCGGTGTTGGATGTGCTGGGA
GTGGCAATCGAGTTAGCCTTAGTTGCCTCCCAGCGCCTGCAACCCTGCAG
CAGCAGCAGCAGTAGCAGCGGTAGCAGTAAGGGAGGGAAGGGAGGGAAGG
AGGGAGGGATGGGCGGCTTAGACGAGGCATTGGCGAGCCTCTTTCCGGTG
CAGCTTGCGGATGGTGGGAGGGCGGCTGCTGCTGCTGCTGCCACTACTGC
CGCTGGGTCTGGTAGAAGTTTGAAGAGGGCAAAGGGTAGCAGAAGCTCGG
CAAGGGCAGACGGTTGGGAGAAGGTTGAAAAGATGGATGTAGACAGCAGC
GAGGAGGAGGGAGACGAGGAAGAGGCGGAGGAAGAAGAAGGAGAAGAAGA
GGAGGAGCTGGCCCCCAGTCATGGCATCAGCATCAGCAGCACAACGTCAG
AGGGAGCAATTAATCTGGCATTAATCGAAGTAATGGTCTCCTCCCGCAGT
GGCCGTGCCCTCCCCCGCCCCGCTCTTGCTTGGCTTTTCTCCTTCCTCCA
ACAGCAGCAACACCAGCAACAGCAGCGTCACCCGTCCCTGCAGGAAGGCA
CTCGTTTGATCCGCCTCTTGACGCACGCCCTCCCCCCTTTATTCCTTTCG
CAGCACGGGGACGACGAGCGGCTCGCCGAGCGGCTTCTCGAACCGTTGGA
AACTTGCCTGTCGCAATGGCCCATATCCTACCCTCCCACCCGCGAGGGGA
TCCGTCTCCTGTCCTCCGTTCTGCCTTATCGAGACCCAGCGGTAGCTCGG
CGGTGGGTGACCAAAAGGGCTACCGCTCATTTGATTGATGCCTGGACGGC
GGCTGCGACTGCTGCAGCTGCAGCTGGTGGTTGTGGTGGTGGTGGAGCAG
CAGCGGCGTCTGAGTTAGCGTTGGTTTTGCTGCGGGCGTTGAAGGAGGAA
GCCATAACTGGTGGTGTTAGTGCTGGAGGAGGAAACGGGGCGAGCGGGGA
TCAGGACGGGGAGCAGGAGCGGTTGGCATGGCTGCCTCTTTTTCTAGCCC
CGCTTCTCCATCCCTCTGCCCTGTGTCACCTCTCGCCTGAAGTGCAATTC
ATCGCGCTTGATCTTCTCTATTACTGCCCTCCCTCCCTCCCTCCCTCCCT
CCTTGCTTCCCTCCAAGCCCTGGCCCATGCCTGTGCACCTTGTCCTCCTT
CGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTTGTGAGATACATGATT
GAGCTCTTGCATCATCGCAAACGGACCTTCACGCCAGCAGGGTATTTGAC
TCTACTAGGCAGCTTTCTTGCCTTCCCTCCCCCCCTCCCTCCTACCGGGG
AGAAAGAGAAGAGGAAAGGAGATAGGAGGAGGAGCAGCAGCAGCAGAGGA
GGAGGGGGGATGCATCATGCGCACGTGGTGGGGGAAGCGGTTGGCCGCTC
ATTGCTTCAGCTTGTGCAGCAGCAGCAGCAGCAAGGAGAGGGGGAGGGAG
GGAGAGAGGGAGGAAGGGAAGGAGGGGGCCCGTTGCGTCTATTGACGATG
TTGACGCCCACGTTGGTACAGCTGATGGGCGTATCGGAGGCAGAAAGCAG
CAGCAGCAGCAGGAGCAGTCCGGCAGCACGGCGAGCAGCTTTGGTTGTGG
TGTCGAACGTGGCAGGAGGAGGAGGAGGGGAGGGTAGAAGGGAGGGCGGA
GTCTTGCCTGACGCGTTAATTGCACCGCTTGTCCAAGCGATGCTCGTAGA
TGGAGAGGAGGAAGAAAGGGAGGGAGGAAGGGAGATGGAAATGGAAGAGA
GGGAGAGTGCTTTGTCTCTTCATATTTCTCTGTTTCGCGACCACCCCATC
CAGCTCCTTCCCTCCTTGCTCACGCACGTCTACCATCTCCTTCTTGGCAT
ACACCAGCTGATTCAGCAACAGCAACCGCAGCAGCAGCAGCAGCAGCAGC
AACAGCAACAGCAACAGCAACCACAGCGGCAACAGCAACAGCAAGAGCTG
GTGGAAATAAAGGAGGAACAAGAGCGAGTGCTCCTGCAGTTTCAAAAGTG
GGTGCGGGAGCCTCTTTTATCCTCGTCCTGGGTGAGAGCATGCCACGGTC
CATACCAACAACTCCGACAAACGTGCGCGGCTGTCTTATCCGTGCGGAGG
CACGAGAATAAGGGAGGTGGGGAAGGAGGCAGGGGAGGAGTGGGGGTGGT
GCGGGGCTTGCTGCATGACTTGAAAATGTTGCCGATAGGAAGAAGATAGA
CAGACTGCGGCAGTGACCACCACATGGCGGGAGGTAAAGATTAAAGAAAA
CATTGATGATATGATCCTTCAAATAAAAATAATATTCAAGAAGGTAAAGT
GAATGAATACTGAGGTATAAACATGCAAAAAGAAAAAGAGGGACAAGTGA
GAT
back to top

protein sequence of NO13G02960.1

>NO13G02960.1-protein ID=NO13G02960.1-protein|Name=NO13G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=883bp
MWLSRLAVARSVLGVVRLLEPAAVEGAAGAGGEQRQQQQKERGVAVVEWQ
RQPRLLLLRATADVAEGRKERKNEREREGGATDAALRSLLPKVTNYILEM
TTTRTAQHQQQQQQQTGRMGGKASETQRQEKQQQQQQQQIEGGPVLDVLG
VAIELALVASQRLQPCSSSSSSSGSSKGGKGGKEGGMGGLDEALASLFPV
QLADGGRAAAAAAATTAAGSGRSLKRAKGSRSSARADGWEKVEKMDVDSS
EEEGDEEEAEEEEGEEEEELAPSHGISISSTTSEGAINLALIEVMVSSRS
GRALPRPALAWLFSFLQQQQHQQQQRHPSLQEGTRLIRLLTHALPPLFLS
QHGDDERLAERLLEPLETCLSQWPISYPPTREGIRLLSSVLPYRDPAVAR
RWVTKRATAHLIDAWTAAATAAAAAGGCGGGGAAAASELALVLLRALKEE
AITGGVSAGGGNGASGDQDGEQERLAWLPLFLAPLLHPSALCHLSPEVQF
IALDLLYYCPPSLPPSLLASLQALAHACAPCPPSSSLPPSLPPSVVRYMI
ELLHHRKRTFTPAGYLTLLGSFLAFPPPLPPTGEKEKRKGDRRRSSSSRG
GGGMHHAHVVGEAVGRSLLQLVQQQQQQGEGEGGREGGREGGGPLRLLTM
LTPTLVQLMGVSEAESSSSSRSSPAARRAALVVVSNVAGGGGGEGRREGG
VLPDALIAPLVQAMLVDGEEEEREGGREMEMEERESALSLHISLFRDHPI
QLLPSLLTHVYHLLLGIHQLIQQQQPQQQQQQQQQQQQQQPQRQQQQQEL
VEIKEEQERVLLQFQKWVREPLLSSSWVRACHGPYQQLRQTCAAVLSVRR
HENKGGGEGGRGGVGVVRGLLHDLKMLPIGRR*
back to top
Synonyms
Publications