NO13G02870, NO13G02870 (gene) Nannochloropsis oceanica

Overview
NameNO13G02870
Unique NameNO13G02870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2649
Alignment locationchr13:798138..802258 -

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Properties
Property NameValue
DescriptionTrna rrna methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:798138..802258 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0032259methylation
GO:0006396RNA processing
GO:0001510RNA methylation
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0003723RNA binding
GO:0016740transferase activity
GO:0008173RNA methyltransferase activity
GO:0008168methyltransferase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR001537SpoU_MeTrfase
Homology
BLAST of NO13G02870 vs. NCBI_GenBank
Match: EWM21952.1 (trna rrna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 468.0 bits (1203), Expect = 4.300e-128
Identity = 299/595 (50.25%), Postives = 344/595 (57.82%), Query Frame = 0
Query:   10 LLPS-LVLFTAAASSTIATLPLLR-FTFLSAVSSSFSLP----SLSSLIKR-SCSASTFVCPLSHQHQQLRQHSSNCHSKPRRFFSTS----SSSSAGTLPK--------KNAWGQRIVPLDNLPHPVPPXXXXXXXXXXXXXXXXXXDLTDPLLRRGLPEIGDIKEGIAFFHLQQEPQEGQSEQQQGATNSSDGSVLPSLSLAIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIGIPIRDGCLVDPQSRPGTPRIHLLLPPTMDPSLPLAGLPSSTITVTWNGDKIRAGSSHRCAATRNDDVAPERKAALDAALVTLGIDVQALTEEDQVTGSGSSALRSYFSFVQPRPNKQHGPVDNAIDLAANRAANQIAFLVRAYRAEQAEYLRNHDEAMSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAETALVSEVITCGFTPHPPHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEEGFLVYAMETTSRSECYAHVQFPEKVALVLGNEVIGVDTMVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGAFEYKMEG 586
            LLPS LVL T+    +I   PL +    ++ +SS+ SLP    +L+   +R   S + F     H+   L +     H   RRF S S    +S S   LP         KNAWGQRI+PL++L   +PP                  DLTD LLRRG+PE+ DIKEG+ FF LQQ P  G+                                                                                                                                   +  +IR GSSHRCAATR D V P RKAALDAAL +L ID+QAL++EDQVTGSGSSALRSYFSFVQPRP+KQH PVDNA++ AA RAANQIAFLVRAYRAEQAE+LRNHDEAMS LQ     MHPL+LILDN+RSAYNVGSLFRTAETAL+ E+ITCGFTPHPPH+KLKKTACRS+ENVPSRHF TTL+AV+ +KEEGF+V+AMETTSRS+CY HV FPEK ALVLGNEVIGVDT VLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWG F+ K EG
Sbjct:    6 LLPSLLVLVTSRTIRSIPGPPLAKPARGVALLSSASSLPHPFSTLAGTSRRIFISRARFDSLPGHRRAPLTESYFYRHEVHRRFVSKSVLFAASPSPSALPPASSLDPPLKNAWGQRIIPLNDL--SLPP-------------SSAVLDLTDDLLRRGIPELADIKEGLVFFQLQQPPHSGR-----------------------------------------------------------------------------------------------------------------------------------DSARIRTGSSHRCAATREDAVVPARKAALDAALTSLDIDLQALSQEDQVTGSGSSALRSYFSFVQPRPHKQHAPVDNALEAAALRAANQIAFLVRAYRAEQAEFLRNHDEAMSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKAALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGTFD-KAEG 453          
BLAST of NO13G02870 vs. NCBI_GenBank
Match: XP_005852777.1 (trna rrna methyltransferase [Nannochloropsis gaditana CCMP526] >EKU23059.1 trna rrna methyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 291.2 bits (744), Expect = 7.200e-75
Identity = 142/171 (83.04%), Postives = 155/171 (90.64%), Query Frame = 0
Query:  415 MSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAETALVSEVITCGFTPHPPHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEEGFLVYAMETTSRSECYAHVQFPEKVALVLGNEVIGVDTMVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGAFEYKMEG 586
            MS LQ     MHPL+LILDN+RSAYNVGSLFRTAETAL+ E+ITCGFTPHPPH+KLKKTACRS+ENVPSRHF TTL+AV+ +KEEGF+V+AMETTSRS+CY HV FPEK ALVLGNEVIGVDT VLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWG F+ K EG
Sbjct:    1 MSRLQSFPRSMHPLVLILDNVRSAYNVGSLFRTAETALLQELITCGFTPHPPHEKLKKTACRSLENVPSRHFSTTLDAVRTMKEEGFVVFAMETTSRSQCYTHVAFPEKAALVLGNEVIGVDTAVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGTFD-KAEG 170          
BLAST of NO13G02870 vs. NCBI_GenBank
Match: XP_005833677.1 (hypothetical protein GUITHDRAFT_86637 [Guillardia theta CCMP2712] >EKX46697.1 hypothetical protein GUITHDRAFT_86637 [Guillardia theta CCMP2712])

HSP 1 Score: 224.2 bits (570), Expect = 1.100e-54
Identity = 122/250 (48.80%), Postives = 167/250 (66.80%), Query Frame = 0
Query:  328 RKAALDAALVTLGIDVQALTEEDQVTGSGSSALRSYFSFVQPRPNKQ-HGPVDNAIDLAANRAANQIAFLVRAYRAEQAEYLRNHDEAMSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAETALVSEVITCGFTPHPPHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEEGFLVYAMETTSRSECYAHVQFPEKVALVLGNEVIGVDTMVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQW 577
            R+ ALD  L  LG+++  L      T  GS A ++Y+SFV PR   Q H P++   + A  R A+QI FL R +RA  AE+LR  DEA +        +HP++L+LDN+RSA+NVGS+ RTAETA V +V+ CG TPHPP+ K+ KTA RS + V   H D+TL AV+K+    + VYA+ETTS+S  Y  V F +  AL++GNE++G+   VL+EC+  +IEIP +G KNS+NVA A PVV++EVLRQW
Sbjct:  172 RQVALDEKLKDLGVNISELLFSK--TFDGSPARKAYWSFVNPREGIQTHSPLE-PFENAVKRYASQILFLDRGHRARLAEFLRTGDEAKAEKVNSCTVIHPVVLVLDNLRSAHNVGSIIRTAETAGVEKVVACGITPHPPNGKVLKTALRSADYVEVEHEDSTLNAVRKLLSRNYSVYALETTSQSRAYTLVNFSKPCALIVGNELLGISPEVLQECN-QLIEIPMYGFKNSMNVACACPVVLYEVLRQW 417          
BLAST of NO13G02870 vs. NCBI_GenBank
Match: CBJ33268.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 220.7 bits (561), Expect = 1.200e-53
Identity = 134/325 (41.23%), Postives = 182/325 (56.00%), Query Frame = 0
Query:  322 DDVAPERKAALDAALVTLGIDVQALTEEDQVTGSGSSALRSYFSFVQPRPNKQHGPVDNAIDLAANRAANQIAFLVRAYRAEQAEYLRNHDEAMSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAETALVSEVITCGFTPHP---PHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEEGFLVYAMETTSRSECYAHVQFP-------------------------------------------------------------------EKVALVLGNEVIGVDTMVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQW 577
            ++ +  R+ ALD ALVT+G+D + LTE D+    G++AL+SY +FV+PRP +    +   +  AA R A+Q+AFLVR +RA++AEYLRN D +M+  ++R L  HP+ L+ DN+RSAYNVGS+FR+A+TA V+EVITCGFTPHP     +K++KT   S++ V  RHF+   EAV+ +K  G  V A+ETT  +     V+FP                                                                     VALVLGNEV GVD  VL  CD  ++E+P FG KNSLNVASA  VV++EVLRQW
Sbjct:  237 NEFSAARQEALDEALVTVGVDPRELTEADEF--FGTAALKSYNTFVRPRPKQLAKVMQEPVARAALRTASQVAFLVRRHRADRAEYLRNKDASMTEAERRGLVAHPVALVCDNVRSAYNVGSIFRSADTARVAEVITCGFTPHPGGHGEEKVRKTGFGSVDAVAHRHFEDPSEAVRSLKAAGAFVCALETTDNASSLFDVRFPLPPALEGKARPKNASAVDAGTAGGGDVVRGSFAAEDSENEARAPKTDGRAVERLDGGSRGGLELEEGGVVALVLGNEVTGVDERVLGLCD-LVVEVPVFGLKNSLNVASAGTVVLYEVLRQW 558          
BLAST of NO13G02870 vs. NCBI_GenBank
Match: CEM37799.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 215.7 bits (548), Expect = 3.800e-52
Identity = 122/285 (42.81%), Postives = 168/285 (58.95%), Query Frame = 0
Query:  322 DDVAPERKAALDAALVTLGIDVQALTEEDQV--------------------------TGSGSSALRSYFSFVQPRPNKQHGPVDNAIDLAANRAANQIAFLVRAYRAEQAEYLRNHDEAMSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAETALVSEVITCGFTPHPPHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEEGFLVYAMETTSRSECYAHVQFPEKVALVLGNEVIGVDTMVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGAFE 581
            ++ +  RKAALD AL +  +    L  E  +                           G G SA R+Y+++V+P P+K  G     ++ +A R A QIA LVRAY+     + RN D     L++     +PL+++LDN+RSA+NVGS+ RTAE   V  V+ CG TPHPPH KL KT+  + E++P  H  T +EAV+++KEEGF +  +ETT RS+ +  + FP K A+V GNEV GV T VL   D  + EIP FG KNS+NVA+AA +VVFEVLRQW AF+
Sbjct:  142 EEYSGRRKAALDVALRSFDLSPPQLANESTMHTTRDAXXXXXXXXXXXXXVDRCIDWDGFGMSAQRTYYTYVRPHPSKLAGLQREPLERSAWRTAAQIAGLVRAYQNSLNAFFRNQDSTRPKLREAG-GRNPLVVVLDNVRSAHNVGSIIRTAEAGGVERVVVCGITPHPPHPKLDKTSLGAHEHIPVHHVGTCVEAVRQLKEEGFTIVVLETTDRSQPHVDISFPPKTAVVFGNEVSGVATDVLHLAD-VLCEIPMFGVKNSINVANAASIVVFEVLRQWRAFD 424          
BLAST of NO13G02870 vs. NCBI_GenBank
Match: XP_005836254.1 (hypothetical protein GUITHDRAFT_104804 [Guillardia theta CCMP2712] >EKX49274.1 hypothetical protein GUITHDRAFT_104804 [Guillardia theta CCMP2712])

HSP 1 Score: 203.0 bits (515), Expect = 2.600e-48
Identity = 128/328 (39.02%), Postives = 170/328 (51.83%), Query Frame = 0
Query:  312 SSHRCAATR-NDDVAPERKAALDAALVTLGIDVQALTEEDQVTGSGSSALRSYFSFVQPRPNKQHGPVDNAIDLAANRAANQIAFLVRAYRAEQAEYLRNHDEAMSLLQQRSLPMHPLLLI--------------------------------------------------------LDNIRSAYNVGSLF-----RTAETALVSEVITCGFTPHPPHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEEGFLVYAMETTSRSECYAHVQFPEKVALVLGNEVIGVDTMVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWG 578
            +SH     R  D  +P R  ALD AL  LG + + +  +      G+ A R+Y S+V PR N+    V+   + AA R A Q++FL+R +RA  A+YLRN D A    +   L  HP+ L+                                                               +     F     RT+E A   +V+TCGFTPHPPH+KL KTA  +IE VPSRHF+TT EA++ +K EG  +  METTSRS+ Y  + +P+  ALVLGNE+ G+ T V+++CD  ++EIPTFG KNSLNVASA PVVVFEVLRQWG
Sbjct:   10 ASHVLGTPREGDSSSPLRARALDEALRRLGENPEDILSD---MFQGTPAKRAYMSYVNPRANRTPNNVETMEESAA-RTAKQVSFLMREHRATLADYLRNVDAARQEQESLGLEPHPITLVGLSETLLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDQFTTWEAFSDRRDRTSERAADQQVVTCGFTPHPPHEKLSKTALSAIEFVPSRHFETTAEAIRVLKSEGVHIIGMETTSRSKSYVRLSYPQPCALVLGNELTGICTQVMQDCD-ELVEIPTFGVKNSLNVASACPVVVFEVLRQWG 332          
BLAST of NO13G02870 vs. NCBI_GenBank
Match: GAX12629.1 (tRNA (guanosine-2'-O-)-methyltransferase [Fistulifera solaris])

HSP 1 Score: 193.4 bits (490), Expect = 2.000e-45
Identity = 123/286 (43.01%), Postives = 171/286 (59.79%), Query Frame = 0
Query:  321 NDDVA----PERKAALDAALVTLGIDVQALTE------EDQVTG----SGSSALRSYFSFVQPRPNKQHGPVDNAIDLAANRAANQIAFLVRAYRAEQAEYLRNHDEAMSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAETALVSEVITCGFTPHPP---HDKLKKTACRSIENVPSRHFDTTLEAVKKVKEE--GFLVYAMETTSRSECYAHVQFPEK-VALVLGNEVIGVDTMVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGAFEYKMEGN 587
            NDD+      ER+  L  +L  L ID Q L +      ED   G     G SA+R+Y SF+            +A   AANR A QI FL+  +++ QAE++R+HD      QQ S    P++L+LDN+RSA+NVGS+FRTA+   VS V+T G TPHP     +KL K+A  +   VPS HF TT +A++ ++ E   + +  METT RS+ Y++  +P   V L+LGNEV GVDT V+ + D  I+EIP +G KNSLN+A+ APVV++EVLRQW   + + E N
Sbjct:   52 NDDITKEIFDERRNRLWTSLQELEIDAQELDQAAISSLEDPTMGYDNRYGKSAIRTYRSFLFSTKQPTSFSTISA-TAAANRCARQIQFLLNRHKSHQAEFVRHHDTP----QQSSRKTFPIILLLDNVRSAFNVGSIFRTADACGVSLVVTVGITPHPEGSGQEKLNKSALGAERLVPSVHFATTRQALEFLRNEKSDYQIIGMETTERSQLYSNYSYPASGVVLLLGNEVTGVDTDVMNDLD-AIVEIPMYGAKNSLNIAACAPVVLYEVLRQWSWSKCEGESN 331          
BLAST of NO13G02870 vs. NCBI_GenBank
Match: GAX27796.1 (tRNA (guanosine-2'-O-)-methyltransferase [Fistulifera solaris])

HSP 1 Score: 191.8 bits (486), Expect = 5.900e-45
Identity = 120/271 (44.28%), Postives = 168/271 (61.99%), Query Frame = 0
Query:  323 DVAPERKAALDAALVTLGIDVQALTE------EDQVTG----SGSSALRSYFSFVQPRPNKQHGPVDN-AIDLAANRAANQIAFLVRAYRAEQAEYLRNHDEAMSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAETALVSEVITCGFTPHP---PHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEE--GFLVYAMETTSRSECYAHVQFPEK-VALVLGNEVIGVDTMVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQW 577
            ++  ER+  L  +L  L ID Q L E      ED   G     G SA+R+Y SF+     KQ  P+   +   AA+R A QI FL+  +++ QAE++R+HD      QQ S    P++L+LDN+RSA+NVGS+FRTA+   VS V+T G TPHP     +KL+K+A  +   VPS HF TT +A++ ++ E   + +  METT RS+ Y+   +P   V L+LGNEV GVDT V+ + D  I+EIP +G KNSLN+A+ APVV++EVLRQW
Sbjct:   68 EIIDERRNRLWKSLRELEIDAQELDEAAISSLEDPTLGYDNRYGKSAIRTYRSFLY--STKQPTPLSTISATAAAHRCARQIQFLLNRHKSHQAEFVRHHDAP----QQSSRRTFPIILLLDNVRSAFNVGSIFRTADACGVSLVVTVGITPHPGGSGQEKLQKSALGAERLVPSVHFATTRQAMEFLRNEKSDYQIIGMETTERSQLYSDYSYPASGVVLLLGNEVTGVDTDVMNDLD-AIVEIPMYGAKNSLNIAACAPVVLYEVLRQW 331          
BLAST of NO13G02870 vs. NCBI_GenBank
Match: XP_005778727.1 (hypothetical protein EMIHUDRAFT_469008 [Emiliania huxleyi CCMP1516] >EOD26298.1 hypothetical protein EMIHUDRAFT_469008 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 186.8 bits (473), Expect = 1.900e-43
Identity = 111/261 (42.53%), Postives = 159/261 (60.92%), Query Frame = 0
Query:  328 RKAALDAALVTLGIDVQALTEEDQVTGSGSSALRSYFSFVQPRPNKQHGPVDNAIDLAANRAANQIAFLVRAYRAEQAEYLRNHDEAMSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAETALVSEVITCGFTPHPPHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEEGFLVYAMETTSRS-ECYAHVQFPEK---VALVLGNEVIGVDTMVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGAFEYKME 585
            R AA+DA L  LG+        D +  +     ++Y +F +PR  +     D+ +   A   A Q+AFL R  +A + E LRN D+A   L++ + P H + ++LDN+RSA NVGS+FRTA+   V  V+TCGFT  PP  KL+KTA  ++ +VP  HF+ T+ AV+ ++  G  V A+ETT  +       Q  ++   VA+VLGNEV GVD  V+EECD  ++EIP FG KNSLNVA  A V ++EVLR+WG +E ++E
Sbjct:   72 RAAAIDAELSRLGV-----ASPDAL--APGPPRKAYETFARPREGEPCD--DDYVRRKAPLMAQQVAFLHRHEQARRNELLRNVDDATQALERAARPRHNVTVVLDNLRSAENVGSIFRTADATRVCRVVTCGFTTTPPDRKLEKTALGALSSVPCDHFEATIAAVRHLRSRGVYVVALETTEDAIPLGVAPQLGDEGRGVAIVLGNEVTGVDKAVMEECD-AVVEIPVFGVKNSLNVACCASVALYEVLRRWGKWESRVE 322          
BLAST of NO13G02870 vs. NCBI_GenBank
Match: ERP38996.1 (RNA methylase, SpoU family [Chitinivibrio alkaliphilus ACht1])

HSP 1 Score: 165.2 bits (417), Expect = 6.000e-37
Identity = 82/172 (47.67%), Postives = 117/172 (68.02%), Query Frame = 0
Query:  408 LRNHDEAMSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAETALVSEVITCGFTPHPPHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEEGFLVYAMETTSRSECYAHVQFPEKVALVLGNEVIGVDTMVLEECDGGIIEIPTFGQKNSLNVASAAPVVVFEVLRQWGAF 580
            +R  D  + + + R+LP H L +ILDN+RSA+NVG++FR A+T  V+E+  CG+T +PPH KL KT+  +I+ VP RHF TT++AV   + +   ++  ETTS S  Y  V+ P KVAL+LGNE +G+   VL+ CD  +IEIPTFG KNSLNVA+A  V+ + +L +   F
Sbjct:   14 VRTFDVDIPVEEYRALPRHNLYIILDNLRSAFNVGAIFRLADTMRVAELFLCGYTAYPPHTKLAKTSLGTIDYVPWRHFPTTMDAVAHCRAQDIHLWGAETTSHSHLYTEVRPPRKVALILGNEALGISEPVLKACD-LLIEIPTFGYKNSLNVATACSVLGYTILEKMEVF 184          
The following BLAST results are available for this feature:
BLAST of NO13G02870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21952.14.300e-12850.25trna rrna methyltransferase [Nannochloropsis gadit... [more]
XP_005852777.17.200e-7583.04trna rrna methyltransferase [Nannochloropsis gadit... [more]
XP_005833677.11.100e-5448.80hypothetical protein GUITHDRAFT_86637 [Guillardia ... [more]
CBJ33268.11.200e-5341.23conserved unknown protein [Ectocarpus siliculosus][more]
CEM37799.13.800e-5242.81unnamed protein product [Vitrella brassicaformis C... [more]
XP_005836254.12.600e-4839.02hypothetical protein GUITHDRAFT_104804 [Guillardia... [more]
GAX12629.12.000e-4543.01tRNA (guanosine-2'-O-)-methyltransferase [Fistulif... [more]
GAX27796.15.900e-4544.28tRNA (guanosine-2'-O-)-methyltransferase [Fistulif... [more]
XP_005778727.11.900e-4342.53hypothetical protein EMIHUDRAFT_469008 [Emiliania ... [more]
ERP38996.16.000e-3747.67RNA methylase, SpoU family [Chitinivibrio alkaliph... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001603NSK001603Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02870.2NO13G02870.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G02870.1NO13G02870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604952gene_9023Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100157g4gene8484Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02870.2NO13G02870.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G02870.1NO13G02870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02870 ID=NO13G02870|Name=NO13G02870|organism=Nannochloropsis oceanica|type=gene|length=2649bp
ATGCGTCATAAGCCTCGCTTCCTGCCTCTCCTGCCCTCCCTGGTGCTTTT
CACAGCCGCAGCCTCCTCGACCATTGCTACCCTGCCGCTGTTACGCTTTA
CCTTTCTCTCTGCCGTCTCCTCCTCCTTCTCCCTCCCCTCGTTGTCATCT
TTGATCAAGCGCTCGTGTAGCGCCTCCACGTTCGTTTGCCCCTTGTCGCA
CCAGCATCAGCAGCTCCGTCAGCACgtacgtactccctcgcttgccaatc
ccatcccttcaccttggtgtccgatgcgttggtgcagacaggcgcaagct
actagccggccataaacactcatttgatctctatcttttttgttctacct
cagTCAAGCAACTGTCATTCAAAGCCCCGACGCTTCTTTTCAACTTCATC
CTCCTCCTCTGCGGGCACACTTCCCAAAAAGAACGCCTGGGGCCAACGTA
TTGTCCCGCTGGACAACCTCCCTCATCCTGTCCCTCCCTCTCTCCCGTCC
TCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCTGTGGTGGTGGACTTGAC
GGACCCCTTGCTGCGACGAGGCTTGCCTGAAATCGGTGACATCAAGGAAG
GAATCGCTTTTTTTCACTTGCAACAAGAACCGCAGGAAGGACAGTCGGAG
CAGCAGCAGGGGGCAACAAACAGCAGTGACGGCAGTGTATTACCCTCCCT
ATCACTCGCAATTTTTCTCCAGCAAGCAGAGGACGACACCACCACACCCA
ACTATCACCTGCAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACGGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCCTCATTGGGA
TCCCCATCCGCGACGGCTGTCTCGTTGACCCACAGAGCCGGCCTGGCACT
CCCCGCATCCATCTCCTCCTCCCTCCTACCATGGATCCCTCCCTCCCACT
CGCCGGTCTTCCTTCCTCCACCATCACTGTGACGTGGAATGGAGACAAGA
TTCGCGCAGGATCATCTCATCGATGTGCTGCCACACGGAATGATGATGTT
GCCCCCGAGAGAAAAGCTGCTCTTGATGCTGCTCTTGTTACGCTTGgtag
gtgccctctctcctttccttccttccttccttcctccctccctcccttgc
ctcctgtgtgatcgtcgtcgtactgctacaaggaaccatagtgttactca
tgagcaatagaacgccctagacaccgctcttacgatcacaggtgggatac
acctttccttccccccctccttccctctcttcttccctttctttagcaat
cgcggcgcaacacttcgcaacctgctgactttcgctacattgtacccacg
cttcccccatccccccctccctctgtcgcctccctcctgtcagGCATCGA
TGTGCAAGCTCTCACCGAGGAAGACCAGGTCACCGGCAGTGGCTCATCCG
CTCTCCGCTCCTACTTCTCCTTCGTCCAACCCCGTCCGAACAAGCAACAT
GGACCTGTGGACAATGCCATTGATCTAGCCGCCAACCGCGCCGCCAATCA
GATTGCTTTTCTCGTGCGAGCGTACAGGGCAGAACAGGCTGAATATTTAC
Ggtaagtcagccaacccgtcctccctccctccctccctccctcgatcctt
cctccttacttaccttcattcccttcctcggccccgccccccctcctccc
ccctccgtcctttctcactagCAACCACGACGAAGCCATGTCCCTGCTGC
AGCAGCGCTCTCTTCCCATGCACCCCCTCCTCCTCATCCTCGACAACATC
CGTAGCGCGTACAACGTAGGCTCACTCTTCCGCACGGCTGAGACCGCTTT
GGTTTCCGAAGTCATCACGTGTGGTTTTACACCGCATCCGCCTCACGACA
AGCTGAAAAAGACTGCGTGTAGATCGATTGAGAATGTACCCAGTCGTCAT
TTCGACACCACTTTGGAGGCGGTGAAAAAAGTGAAGGAGGAGGGCTTCCT
CGTGTACGCCATGGAGACGACGAGCCGGAGCGAGTGCTATGCCCATGTTC
AATTTCCCGAAAAAGTGGCGTTAGTGCTGGGTAGGTTGTTTTCACTCTAT
TCCTTCATCCATACATTTATTTTCTCCTTCATCTCACTCGCTCATTACTG
TGCACCTTCTTTTTCTTCTTTCTGTTTGTCGGAAAAGGGGCTTGGGAAAG
GAGGATCAGAAGGTGGTAGAATCCACTGGAATTGAATGAATCATTGCAGG
AGAGAGAAATGAATCTTTCTCTTTCCCTCCCTCCCTCCCTCCGTCCCTTC
CTCCCTCCCTCCCCCCTCTCAGGCAATGAAGTGATCGGCGTTGACACCAT
GGTGTTGGAGGAGTGCGATGGCGGGATAATTGAAATCCCAACCTTTGGAC
AGAAAAATAGTTTGAATGTCGCGAGTGCAGCGCCGGTCGTGGTATTTGAG
GTGTTACGGCAGTGGGGTGCCTTCGAGTACAAGATGGAAGGAAATAAATA
AAGCCAAAATGAGAGAAACAACATGTATAAAATTCGAGTCAGAATGGAAG
AATAGGAGACGAAGAGAAAAAATAGAAAATCATAAATGTGCGTGTGAAA
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protein sequence of NO13G02870.2

>NO13G02870.2-protein ID=NO13G02870.2-protein|Name=NO13G02870.2|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MRHKPRFLPLLPSLVLFTAAASSTIATLPLLRFTFLSAVSSSFSLPSLSS
LIKRSCSASTFVCPLSHQHQQLRQHSSNCHSKPRRFFSTSSSSSAGTLPK
KNAWGQRIVPLDNLPHPVPPSLPSSSSSSSSSSSSVVVDLTDPLLRRGLP
EIGDIKEGIAFFHLQQEPQEGQSEQQQGATNSSDGSVLPSLSLAIFLQQA
EDDTTTPNYHLQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQQQQQQQQQQ
QQQRLIGIPIRDGCLVDPQSRPGTPRIHLLLPPTMDPSLPLAGLPSSTIT
VTWNGDKIRAGSSHRCAATRNDDVAPERKAALDAALVTLGIDVQALTEED
QVTGSGSSALRSYFSFVQPRPNKQHGPVDNAIDLAANRAANQIAFLVRAY
RAEQAEYLRNHDEAMSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAET
ALVSEVITCGFTPHPPHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEEG
FLVYAMETTSRSECYAHVQFPEKVALVLGNEVIGVDTMVLEECDGGIIEI
PTFGQKNSLNVASAAPVVVFEVLRQWGAFEYKMEGNK*
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protein sequence of NO13G02870.1

>NO13G02870.1-protein ID=NO13G02870.1-protein|Name=NO13G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=580bp
MRHKPRFLPLLPSLVLFTAAASSTIATLPLLRFTFLSAVSSSFSLPSLSS
LIKRSCSASTFVCPLSHQHQQLRQHSSNCHSKPRRFFSTSSSSSAGTLPK
KNAWGQRIVPLDNLPHPVPPSLPSSSSSSSSSSSSVVVDLTDPLLRRGLP
EIGDIKEGIAFFHLQQEPQEGQSEQQQGATNSSDGSVLPSLSLAIFLQQA
EDDTTTPNYHLQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQQQQQQQQQQ
QQQRLIGIPIRDGCLVDPQSRPGTPRIHLLLPPTMDPSLPLAGLPSSTIT
VTWNGDKIRAGSSHRCAATRNDDVAPERKAALDAALVTLGIDVQALTEED
QVTGSGSSALRSYFSFVQPRPNKQHGPVDNAIDLAANRAANQIAFLVRAY
RAEQAEYLRNHDEAMSLLQQRSLPMHPLLLILDNIRSAYNVGSLFRTAET
ALVSEVITCGFTPHPPHDKLKKTACRSIENVPSRHFDTTLEAVKKVKEEG
FLVYAMETTSRSECYAHVQFPEKVALVLGRLFSLYSFIHTFIFSFISLAH
YCAPSFSSFCLSEKGLGKGGSEGGRIHWN*
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Synonyms
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