NO13G02650, NO13G02650 (gene) Nannochloropsis oceanica

Overview
NameNO13G02650
Unique NameNO13G02650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2148
Alignment locationchr13:730792..732939 -

Link to JBrowse

Properties
Property NameValue
Description30s ribosomal protein s15
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:730792..732939 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR009068S15_NS1_RNA-bd
IPR005290Ribosomal_S15_bac-type
IPR000589Ribosomal_S15
Homology
[Close]
BLAST of NO13G02650 vs. NCBI_GenBank
Match: WP_039725488.1 (30S ribosomal protein S15 [Lyngbya confervoides] >KIF13820.1 30S ribosomal protein S15 [Aphanocapsa montana BDHKU210001] >KIF38758.1 30S ribosomal protein S15 [Lyngbya confervoides BDU141951])

HSP 1 Score: 82.4 bits (202), Expect = 3.200e-12
Identity = 38/86 (44.19%), Postives = 63/86 (73.26%), Query Frame = 0 
Query:  233 LLEQAQLEMQRKYQMHDKDVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYVSKKNKPGAIKLASELGIR 319
            LL++ + E+  +YQ+H+ D GS+ VQ+A LT  +N L++H+Q+N +DYS+RRGLL+ +  R++LL+Y++KK+     +L   LGIR
Sbjct:    3 LLQERKQELISEYQVHETDTGSAEVQVAMLTERINKLSQHLQSNKKDYSSRRGLLKMIGRRKRLLSYIAKKDVNQYRELIGRLGIR 88
[Close]
BLAST of NO13G02650 vs. NCBI_GenBank
Match: WP_009460042.1 (MULTISPECIES: 30S ribosomal protein S15 [Fischerella] >EHC08558.1 ribosomal protein S15 [Fischerella sp. JSC-11] >BAU08983.1 ribosomal protein S15 [Fischerella sp. NIES-3754] >OKH12434.1 30S ribosomal protein S15 [Fischerella major NIES-592] >PLZ07922.1 30S ribosomal protein S15 [Fischerella thermalis WC114] >PLZ08542.1 30S ribosomal protein S15 [Fischerella thermalis WC119] >PLZ13061.1 30S ribosomal protein S15 [Fischerella thermalis WC1110] >PLZ23460.1 30S ribosomal protein S15 [Fischerella thermalis WC157] >PLZ24193.1 30S ribosomal protein S15 [Fischerella thermalis WC341] >PLZ30830.1 30S ribosomal protein S15 [Fischerella thermalis WC559] >PLZ33002.1 30S ribosomal protein S15 [Fischerella thermalis WC558] >PLZ37886.1 30S ribosomal protein S15 [Fischerella thermalis WC542] >PLZ41603.1 30S ribosomal protein S15 [Fischerella thermalis WC527] >PLZ42167.1 30S ribosomal protein S15 [Fischerella thermalis WC538] >PLZ47511.1 30S ribosomal protein S15 [Fischerella thermalis WC441] >PLZ61061.1 30S ribosomal protein S15 [Fischerella thermalis WC439] >PLZ61081.1 30S ribosomal protein S15 [Fischerella thermalis WC442] >PLZ61240.1 30S ribosomal protein S15 [Fischerella thermalis WC344] >PLZ65866.1 30S ribosomal protein S15 [Fischerella thermalis WC246] >PLZ70119.1 30S ribosomal protein S15 [Fischerella thermalis WC249] >PLZ77745.1 30S ribosomal protein S15 [Fischerella thermalis WC213] >PLZ79685.1 30S ribosomal protein S15 [Fischerella thermalis WC245] >PLZ83030.1 30S ribosomal protein S15 [Fischerella thermalis WC217] >PLZ99301.1 30S ribosomal protein S15 [Fischerella thermalis CCMEE 5268] >PMB01477.1 30S ribosomal protein S15 [Fischerella thermalis CCMEE 5196] >PMB08673.1 30S ribosomal protein S15 [Fischerella thermalis CCMEE 5273] >PMB09131.1 30S ribosomal protein S15 [Fischerella thermalis CCMEE 5282] >PMB13160.1 30S ribosomal protein S15 [Fischerella thermalis CCMEE 5328] >PMB25253.1 30S ribosomal protein S15 [Fischerella thermalis CCMEE 5198] >PMB33220.1 30S ribosomal protein S15 [Fischerella thermalis BR2B] >PMB36253.1 30S ribosomal protein S15 [Fischerella thermalis CCMEE 5208] >PMB44531.1 30S ribosomal protein S15 [Fischerella thermalis CCMEE 5330] >PMB49714.1 30S ribosomal protein S15 [Fischerella thermalis CCMEE 5205])

HSP 1 Score: 82.0 bits (201), Expect = 4.200e-12
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 0 
Query:  233 LLEQAQLEMQRKYQMHDKDVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYVSKKNKPGAIKLASELGIR 319
            L +Q + E+  +YQ+H+ D GS+ VQIA LT  +N L++H+Q N +D+S+RRGLL+ +  R++LL+Y+ K+N+     L S LGIR
Sbjct:    3 LTQQRKQEIISQYQVHETDTGSADVQIAMLTERINRLSEHLQANKKDFSSRRGLLKLIGQRKRLLSYIQKENREHYQALISRLGIR 88
[Close]
BLAST of NO13G02650 vs. NCBI_GenBank
Match: WP_011431855.1 (30S ribosomal protein S15 [Synechococcus sp. JA-2-3B'a(2-13)] >Q2JPU2.1 RecName: Full=30S ribosomal protein S15 >ABD01184.1 ribosomal protein S15 [Synechococcus sp. JA-2-3B'a(2-13)])

HSP 1 Score: 82.0 bits (201), Expect = 4.200e-12
Identity = 37/88 (42.05%), Postives = 62/88 (70.45%), Query Frame = 0 
Query:  233 LLEQAQLEMQRKYQMHDKDVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYVSKKNKPGAIKLASELGIRFR 321
            LL+Q + ++   Y++HD D GS+ VQ+A LT+ +N L++H+Q NP+D+++RRGLL  +  R++LLNY++K +     +LA  L IR +
Sbjct:    3 LLQQEKQQIIESYRLHDTDTGSAEVQVALLTSRINQLSQHLQRNPKDFNSRRGLLMMIGRRKRLLNYIAKHSPDRFRELAERLNIRVK 90
[Close]
BLAST of NO13G02650 vs. NCBI_GenBank
Match: WP_102222559.1 (30S ribosomal protein S15 [Fischerella thermalis] >PLZ84879.1 30S ribosomal protein S15 [Fischerella thermalis CCMEE 5194])

HSP 1 Score: 82.0 bits (201), Expect = 4.200e-12
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 0 
Query:  233 LLEQAQLEMQRKYQMHDKDVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYVSKKNKPGAIKLASELGIR 319
            L +Q + E+  +YQ+H+ D GS+ VQIA LT  +N L++H+Q N +D+S+RRGLL+ +  R++LL+Y+ K+N+     L S LGIR
Sbjct:    3 LTQQRKQEIISQYQVHETDTGSANVQIAMLTERINRLSEHLQVNKKDFSSRRGLLKLIGQRKRLLSYIQKENREHYQALISRLGIR 88
[Close]
BLAST of NO13G02650 vs. NCBI_GenBank
Match: WP_102182586.1 (30S ribosomal protein S15 [Fischerella thermalis] >PMB19753.1 30S ribosomal protein S15 [Fischerella thermalis CCMEE 5318])

HSP 1 Score: 82.0 bits (201), Expect = 4.200e-12
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 0 
Query:  233 LLEQAQLEMQRKYQMHDKDVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYVSKKNKPGAIKLASELGIR 319
            L +Q + E+  +YQ+H+ D GS+ VQIA LT  +N L++H+Q N +D+S+RRGLL+ +  R++LL+Y+ K+N+     L S LGIR
Sbjct:    3 LTQQRKQEIISQYQVHETDTGSADVQIAMLTERINRLSEHLQANKKDFSSRRGLLKLIGQRKRLLSYIQKENREHYQTLISRLGIR 88
[Close]
BLAST of NO13G02650 vs. NCBI_GenBank
Match: WP_016859899.1 (30S ribosomal protein S15 [Fischerella muscicola])

HSP 1 Score: 81.6 bits (200), Expect = 5.400e-12
Identity = 38/86 (44.19%), Postives = 61/86 (70.93%), Query Frame = 0 
Query:  233 LLEQAQLEMQRKYQMHDKDVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYVSKKNKPGAIKLASELGIR 319
            L +Q +LE+  +YQ+HD D GS+ VQ+A LT  +N L++H+Q N +D+S+RRGLL+ +  R++LL+Y+ K ++     L + LGIR
Sbjct:    3 LTQQRKLEIISQYQVHDTDTGSADVQVAMLTERINRLSEHLQANKKDFSSRRGLLKLIGQRKRLLSYIQKDSREHYQALIARLGIR 88
[Close]
BLAST of NO13G02650 vs. NCBI_GenBank
Match: WP_013886607.1 (30S ribosomal protein S15 [Flexistipes sinusarabici] >AEI15126.1 ribosomal protein S15 [Flexistipes sinusarabici DSM 4947])

HSP 1 Score: 81.3 bits (199), Expect = 7.100e-12
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 0 
Query:  233 LLEQAQLEMQRKYQMHDKDVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYVSKKNKPGAIKLASELGIR 319
            L ++ + E+  K+++HD D GS  VQ+A LTN +  LT+H + +P+DY +R+GLL  V  RRKLL+Y+ KKN     KL S LGIR
Sbjct:    3 LAKEEKQEIMEKFKVHDNDTGSPEVQVALLTNRIKDLTEHFKNHPQDYHSRKGLLILVGKRRKLLDYLKKKNYNRYKKLISNLGIR 88
[Close]
BLAST of NO13G02650 vs. NCBI_GenBank
Match: XP_005780630.1 (hypothetical protein EMIHUDRAFT_456985 [Emiliania huxleyi CCMP1516] >XP_005786407.1 hypothetical protein EMIHUDRAFT_429394 [Emiliania huxleyi CCMP1516] >EOD28201.1 hypothetical protein EMIHUDRAFT_456985 [Emiliania huxleyi CCMP1516] >EOD33978.1 hypothetical protein EMIHUDRAFT_429394 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 81.3 bits (199), Expect = 7.100e-12
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 0 
Query:  189 MNEFSEGGE-FDPNDEKMYRLLGLDALDEKKARV-----------NPEDFTLPG-GFLLEQAQLEMQRKYQMHDKDVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYVSKKNKPGAIKLASELGIR 319
            M+E +E GE   P D+    LL   A DE                NP++   P   F  EQ+   M++KY++H  D GS+ VQIA LT  + Y+T H+Q N +DY++ RGL   V  RRKLL Y+ +++     +L SELGIR
Sbjct:   44 MDEVAEAGEAAAPVDDFTEELLDALAADEAPLSAMETQPVFVKADNPDETLEPRLAFTNEQSVEAMRQKYRLHASDTGSAQVQIAVLTARIQYMTSHMQKNKKDYASLRGLTAMVVRRRKLLEYLLREDLSEFQRLTSELGIR 186
[Close]
BLAST of NO13G02650 vs. NCBI_GenBank
Match: WP_016875148.1 (30S ribosomal protein S15 [Chlorogloeopsis fritschii])

HSP 1 Score: 80.9 bits (198), Expect = 9.300e-12
Identity = 38/86 (44.19%), Postives = 61/86 (70.93%), Query Frame = 0 
Query:  233 LLEQAQLEMQRKYQMHDKDVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYVSKKNKPGAIKLASELGIR 319
            L +Q + E+  +YQ+H+ D GS+ VQIA LT  +N L++H+Q N +D+S+RRGLL+ +  R++LL+Y+ K+N+     L + LGIR
Sbjct:    3 LTQQRKQEIISQYQVHETDTGSADVQIAMLTERINRLSQHLQANKKDFSSRRGLLKLIGQRKRLLSYIQKENREHYQALIARLGIR 88
[Close]
BLAST of NO13G02650 vs. NCBI_GenBank
Match: XP_002178279.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49944.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 80.9 bits (198), Expect = 9.300e-12
Identity = 36/79 (45.57%), Postives = 57/79 (72.15%), Query Frame = 0 
Query:  240 EMQRKYQMHDKDVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYVSKKNKPGAIKLASELGIR 319
            E++ K++ H+KD GS   Q+A +T  + YLTKH+Q +P+D+S RRGL+  VN RR+LLNY+S+++     +L + LG+R
Sbjct:    7 ELRAKHRRHEKDTGSPEYQVAGMTERIAYLTKHLQQHPKDFSTRRGLVALVNKRRRLLNYLSREDTGRYTELVASLGVR 85
The following BLAST results are available for this feature:
BLAST of NO13G02650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_039725488.13.200e-1244.1930S ribosomal protein S15 [Lyngbya confervoides] >... [more]
WP_009460042.14.200e-1245.35MULTISPECIES: 30S ribosomal protein S15 [Fischerel... [more]
WP_011431855.14.200e-1242.0530S ribosomal protein S15 [Synechococcus sp. JA-2-... [more]
WP_102222559.14.200e-1245.3530S ribosomal protein S15 [Fischerella thermalis] ... [more]
WP_102182586.14.200e-1245.3530S ribosomal protein S15 [Fischerella thermalis] ... [more]
WP_016859899.15.400e-1244.1930S ribosomal protein S15 [Fischerella muscicola][more]
WP_013886607.17.100e-1247.6730S ribosomal protein S15 [Flexistipes sinusarabic... [more]
XP_005780630.17.100e-1238.46hypothetical protein EMIHUDRAFT_456985 [Emiliania ... [more]
WP_016875148.19.300e-1244.1930S ribosomal protein S15 [Chlorogloeopsis fritsch... [more]
XP_002178279.19.300e-1245.57predicted protein, partial [Phaeodactylum tricornu... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR024ncniR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001631NSK001631Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02650.1NO13G02650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618426gene_11394Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100070g2gene8509Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02650.1NO13G02650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02650 ID=NO13G02650|Name=NO13G02650|organism=Nannochloropsis oceanica|type=gene|length=2148bp
AGAGCGACGCTGCTCTGCCCATCTTGAACGATGAGGGAGTATGTGTGGTT
GAGAGAGCGGCGTGAGTGGGTGTTGTTGCTGCTGCGTTTCGAGTTGTCCT
TGGCCCCGGCACGATGTCCATGACCTACAGGATCATTCTTGTTGGTTATC
CATATCACTAGATGGCCTTTTAGATAGTGGGCGGGCCGACTGCAGCCTGC
GCTCTTCCCCAATGCTTGGCTGGGTCTGGGAGGAGAGGCGATGTCTCCTC
CTCGCCATGCTGCTGCTGCTGCAGCAGAGGGCAAGACTCAAATGAAGTGT
CAACCATCCCAGCACCAAAATATACAGACAGGCTCTGCGCTAAGATGAGG
AGGGCTATGAGTCAACATTGTCCTGGCTGCTGTCTTACCAATCCGCCTAA
ATTCCTGCCTTCAGACCTTGCTCGTTGCTACGTGTGTGTATCTTGCCCTG
CGCCGACTCACCCTCTGAAACCCACCCCTACAATACCCCTACACAGGTTT
TCAACCATGCTGTTGCAAAGAGGAGTTTTCCTGAGTTGCCTGCTCGCCTC
AGCGGTGGCTTTTGCGCCGTCCATGCGAGCTCGTGCGgtaagttgggcac
gcctggaggcgagggaggagggagggagagagtgttacaggatgggttgg
cggctgattgcagcagcagctgctgctgttgatgaagatgccacggcctt
gtgtggcattgcctgcgtcctgtgtgcaggacatgttaacaagtcaaagc
attgaggcgcgatgcggtggagaagctcaggctgacgctgccgcgcataa
gtaagtgggtcgctcctcgttccccgcgatggatgcgcgtgccgccgatg
cctactcacacacattggctgctggattcaacaagggaatgaaagaggaa
aggaggaacgagagaatgtacagaagagcggtctcatgtaggcaggaact
aggtttccaacccacgcacgctttcctctctttcatatgcgtgcaacaca
aagatgataagcttctatccatcaccattcactccttctctttcccaacc
ttccccacattttcccgcgataacagGCGACAGCAGCACAACAAAGGGCA
GTCAGCGCGCGCGTGTACGCCGCAGGGCCGGATGTGCCGGGAGGTTTGGT
GCCCGAGGACGACGAGGAGATCACTGAGACGTTTACGGAGATTGATGGGG
TTGTGTTCGAGGGCGACTTTGAGGATGACTCGGTGAAGCCGTCACTGACC
TCGTTGTTGGAGGACGTTGGTGACGATGGAGGTGACGGGTTTAAGCTTGA
CTCTGATGATAGCTTTTTTTCGATCCCGGATTATGTGCCTTCGGAGTTAC
CGGACTTGGCGGCGTTGGGGTCCGGGTTGGAGAGCAAGAGGGATATGATG
AATGAGTTTTCGGAGGGGGGGGAGTTCGATCCGAATGATGAGAAGATGTA
CCGCCTGCTGGGATTGGACGCCTTGGACGAGAAGAAGGCGCGTGTCAACC
CCGAAGACTTCACCCTACCCGGAGGCTTTCTCCTCGAGCAGGCTCAGTTG
GAAATGCAACGCAAGTACCAGATGCACGACAAGGATGTGGGGTCTTCGGC
CGTCCAAATTGCGCAGCTTACCAATACGGTGAACTACTTGACAAAGCACG
TACAGACCAACCCCCGCGACTACTCCGCCCGCCGCGGCCTCCTGCAAGCG
GTGAACCTTCGTCGCAAGCTTCTCAACTACGTGTCTAAGAAGAACAAGCC
CGGCGCTATCAAGCTGGCTTCAGAGCTTGGCATTCGTTTCCGTGCACCGG
AGGCCGCGCGGTCTAAGTTCGAGAAGTATCGATTCTATACGAACACCAAG
AGCAAGAAAGCGAAGAATATGCAGGCCGTGGCTGATGCCAGGGCTGCCGA
AGCCGAAGCGGAGGCCAAGGCGTCGATGAAAGCGTGAGCGACTTAACTAT
AAGGAAGGGAGGAAGGACGTGGAAGAGAGGATCTTCCTGTGGGAATGGAG
GAGGAGTGGAACTGCTGTCGACGGCGACTCTTCTGCAGAATAGCAGCAGC
GATAGCGTTGTGAGAGTGCTTTAAGCTCTCACACGTACAAAAAAGAAACA
CACATATATCAATTAAGAAACGGTCGGTGAAGAAAAAAGAAGGAATCG
back to top

protein sequence of NO13G02650.1

>NO13G02650.1-protein ID=NO13G02650.1-protein|Name=NO13G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MRRAMSQHCPGCCLTNPPKFLPSDLARCYVCVSCPAPTHPLKPTPTIPLH
RFSTMLLQRGVFLSCLLASAVAFAPSMRARAATAAQQRAVSARVYAAGPD
VPGGLVPEDDEEITETFTEIDGVVFEGDFEDDSVKPSLTSLLEDVGDDGG
DGFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFSEGGEFDP
NDEKMYRLLGLDALDEKKARVNPEDFTLPGGFLLEQAQLEMQRKYQMHDK
DVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYV
SKKNKPGAIKLASELGIRFRAPEAARSKFEKYRFYTNTKSKKAKNMQAVA
DARAAEAEAEAKASMKA*
back to top
Synonyms
Publications