NO13G02650.1, NO13G02650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02650.1
Unique NameNO13G02650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1659
Alignment locationchr13:730792..732939 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:730792..732939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02650.1 vs.
Match: EWM21908.1 (30s ribosomal protein s15 [Nannochloropsis gaditana])

HSP 1 Score: 466.1 bits (1198), Expect = 1.000e-127
Identity = 242/308 (78.57%), Postives = 273/308 (88.64%), Query Frame = 0 
Query:   55 MLLQRGVFLSCLLASAVAFAPSMRARAATAAQQRAVSARVYAAGPDVPGG--LVPEDDEEITETFTEIDGVVFEGDFEDDSVKPSLTSLLEDVGDDGGDGFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFSEGGEFDPNDEKMYRLLGLDALDEKKARVNPEDFTLPGGFLLEQAQLEMQRKYQMHDKDVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYVSKKNKPGAIKLASELGIRFRAPEAARSKFEKYRFYTNTKSKKAKNMQAVADARAAEAEAE 361
            MLLQ+GV +SCLL  AVA+ P MR   +TA   ++V  R+YA+GP+ PGG  LVPEDDEE+TE FTEIDGVVFEGDFEDDSVKPSLTSLLEDV DDG + FKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEF EGGEFDPNDEKMYRLLGLDALDEKK R +PEDFTLPGG+LLEQA+LE+ +KYQ HDKDVGSSAVQ+AQ T T++YLTKHVQ NPRDYSARRGL++AVN+RRKLLNY+SK+NKP A+KLA+ELGIRFR P+ ARSKFE YRFY NTKSKKAKNMQ++AD +AA AEA+
Sbjct:    1 MLLQKGVLVSCLLTCAVAYVPPMRGPRSTAVS-KSVKLRLYASGPEAPGGSQLVPEDDEEMTEGFTEIDGVVFEGDFEDDSVKPSLTSLLEDVADDGSEAFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFVEGGEFDPNDEKMYRLLGLDALDEKKTRKSPEDFTLPGGYLLEQARLEVAQKYQKHDKDVGSSAVQVAQFTQTISYLTKHVQVNPRDYSARRGLIRAVNIRRKLLNYISKRNKPFALKLAAELGIRFRPPDGARSKFEMYRFYKNTKSKKAKNMQSIADLKAA-AEAQ 306
The following BLAST results are available for this feature:
BLAST of NO13G02650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21908.11.000e-12778.5730s ribosomal protein s15 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02650NO13G02650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02650.1NO13G02650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02650.1.cds1NO13G02650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02650.1.cds2NO13G02650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02650.1 ID=NO13G02650.1|Name=NO13G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
AGAGCGACGCTGCTCTGCCCATCTTGAACGATGAGGGAGTATGTGTGGTT
GAGAGAGCGGCGTGAGTGGGTGTTGTTGCTGCTGCGTTTCGAGTTGTCCT
TGGCCCCGGCACGATGTCCATGACCTACAGGATCATTCTTGTTGGTTATC
CATATCACTAGATGGCCTTTTAGATAGTGGGCGGGCCGACTGCAGCCTGC
GCTCTTCCCCAATGCTTGGCTGGGTCTGGGAGGAGAGGCGATGTCTCCTC
CTCGCCATGCTGCTGCTGCTGCAGCAGAGGGCAAGACTCAAATGAAGTGT
CAACCATCCCAGCACCAAAATATACAGACAGGCTCTGCGCTAAGATGAGG
AGGGCTATGAGTCAACATTGTCCTGGCTGCTGTCTTACCAATCCGCCTAA
ATTCCTGCCTTCAGACCTTGCTCGTTGCTACGTGTGTGTATCTTGCCCTG
CGCCGACTCACCCTCTGAAACCCACCCCTACAATACCCCTACACAGGTTT
TCAACCATGCTGTTGCAAAGAGGAGTTTTCCTGAGTTGCCTGCTCGCCTC
AGCGGTGGCTTTTGCGCCGTCCATGCGAGCTCGTGCGGCGACAGCAGCAC
AACAAAGGGCAGTCAGCGCGCGCGTGTACGCCGCAGGGCCGGATGTGCCG
GGAGGTTTGGTGCCCGAGGACGACGAGGAGATCACTGAGACGTTTACGGA
GATTGATGGGGTTGTGTTCGAGGGCGACTTTGAGGATGACTCGGTGAAGC
CGTCACTGACCTCGTTGTTGGAGGACGTTGGTGACGATGGAGGTGACGGG
TTTAAGCTTGACTCTGATGATAGCTTTTTTTCGATCCCGGATTATGTGCC
TTCGGAGTTACCGGACTTGGCGGCGTTGGGGTCCGGGTTGGAGAGCAAGA
GGGATATGATGAATGAGTTTTCGGAGGGGGGGGAGTTCGATCCGAATGAT
GAGAAGATGTACCGCCTGCTGGGATTGGACGCCTTGGACGAGAAGAAGGC
GCGTGTCAACCCCGAAGACTTCACCCTACCCGGAGGCTTTCTCCTCGAGC
AGGCTCAGTTGGAAATGCAACGCAAGTACCAGATGCACGACAAGGATGTG
GGGTCTTCGGCCGTCCAAATTGCGCAGCTTACCAATACGGTGAACTACTT
GACAAAGCACGTACAGACCAACCCCCGCGACTACTCCGCCCGCCGCGGCC
TCCTGCAAGCGGTGAACCTTCGTCGCAAGCTTCTCAACTACGTGTCTAAG
AAGAACAAGCCCGGCGCTATCAAGCTGGCTTCAGAGCTTGGCATTCGTTT
CCGTGCACCGGAGGCCGCGCGGTCTAAGTTCGAGAAGTATCGATTCTATA
CGAACACCAAGAGCAAGAAAGCGAAGAATATGCAGGCCGTGGCTGATGCC
AGGGCTGCCGAAGCCGAAGCGGAGGCCAAGGCGTCGATGAAAGCGTGAGC
GACTTAACTATAAGGAAGGGAGGAAGGACGTGGAAGAGAGGATCTTCCTG
TGGGAATGGAGGAGGAGTGGAACTGCTGTCGACGGCGACTCTTCTGCAGA
ATAGCAGCAGCGATAGCGTTGTGAGAGTGCTTTAAGCTCTCACACGTACA
AAAAAGAAACACACATATATCAATTAAGAAACGGTCGGTGAAGAAAAAAG
AAGGAATCG
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protein sequence of NO13G02650.1

>NO13G02650.1-protein ID=NO13G02650.1-protein|Name=NO13G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MRRAMSQHCPGCCLTNPPKFLPSDLARCYVCVSCPAPTHPLKPTPTIPLH
RFSTMLLQRGVFLSCLLASAVAFAPSMRARAATAAQQRAVSARVYAAGPD
VPGGLVPEDDEEITETFTEIDGVVFEGDFEDDSVKPSLTSLLEDVGDDGG
DGFKLDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFSEGGEFDP
NDEKMYRLLGLDALDEKKARVNPEDFTLPGGFLLEQAQLEMQRKYQMHDK
DVGSSAVQIAQLTNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYV
SKKNKPGAIKLASELGIRFRAPEAARSKFEKYRFYTNTKSKKAKNMQAVA
DARAAEAEAEAKASMKA*
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mRNA from alignment at chr13:730792..732939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02650.1 ID=NO13G02650.1|Name=NO13G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp|location=Sequence derived from alignment at chr13:730792..732939- (Nannochloropsis oceanica)
AGAGCGACGCTGCTCTGCCCATCTTGAACGATGAGGGAGTATGTGTGGTT
GAGAGAGCGGCGTGAGTGGGTGTTGTTGCTGCTGCGTTTCGAGTTGTCCT
TGGCCCCGGCACGATGTCCATGACCTACAGGATCATTCTTGTTGGTTATC
CATATCACTAGATGGCCTTTTAGATAGTGGGCGGGCCGACTGCAGCCTGC
GCTCTTCCCCAATGCTTGGCTGGGTCTGGGAGGAGAGGCGATGTCTCCTC
CTCGCCATGCTGCTGCTGCTGCAGCAGAGGGCAAGACTCAAATGAAGTGT
CAACCATCCCAGCACCAAAATATACAGACAGGCTCTGCGCTAAGATGAGG
AGGGCTATGAGTCAACATTGTCCTGGCTGCTGTCTTACCAATCCGCCTAA
ATTCCTGCCTTCAGACCTTGCTCGTTGCTACGTGTGTGTATCTTGCCCTG
CGCCGACTCACCCTCTGAAACCCACCCCTACAATACCCCTACACAGGTTT
TCAACCATGCTGTTGCAAAGAGGAGTTTTCCTGAGTTGCCTGCTCGCCTC
AGCGGTGGCTTTTGCGCCGTCCATGCGAGCTCGTGCGGTAAGTTGGGCAC
GCCTGGAGGCGAGGGAGGAGGGAGGGAGAGAGTGTTACAGGATGGGTTGG
CGGCTGATTGCAGCAGCAGCTGCTGCTGTTGATGAAGATGCCACGGCCTT
GTGTGGCATTGCCTGCGTCCTGTGTGCAGGACATGTTAACAAGTCAAAGC
ATTGAGGCGCGATGCGGTGGAGAAGCTCAGGCTGACGCTGCCGCGCATAA
GTAAGTGGGTCGCTCCTCGTTCCCCGCGATGGATGCGCGTGCCGCCGATG
CCTACTCACACACATTGGCTGCTGGATTCAACAAGGGAATGAAAGAGGAA
AGGAGGAACGAGAGAATGTACAGAAGAGCGGTCTCATGTAGGCAGGAACT
AGGTTTCCAACCCACGCACGCTTTCCTCTCTTTCATATGCGTGCAACACA
AAGATGATAAGCTTCTATCCATCACCATTCACTCCTTCTCTTTCCCAACC
TTCCCCACATTTTCCCGCGATAACAGGCGACAGCAGCACAACAAAGGGCA
GTCAGCGCGCGCGTGTACGCCGCAGGGCCGGATGTGCCGGGAGGTTTGGT
GCCCGAGGACGACGAGGAGATCACTGAGACGTTTACGGAGATTGATGGGG
TTGTGTTCGAGGGCGACTTTGAGGATGACTCGGTGAAGCCGTCACTGACC
TCGTTGTTGGAGGACGTTGGTGACGATGGAGGTGACGGGTTTAAGCTTGA
CTCTGATGATAGCTTTTTTTCGATCCCGGATTATGTGCCTTCGGAGTTAC
CGGACTTGGCGGCGTTGGGGTCCGGGTTGGAGAGCAAGAGGGATATGATG
AATGAGTTTTCGGAGGGGGGGGAGTTCGATCCGAATGATGAGAAGATGTA
CCGCCTGCTGGGATTGGACGCCTTGGACGAGAAGAAGGCGCGTGTCAACC
CCGAAGACTTCACCCTACCCGGAGGCTTTCTCCTCGAGCAGGCTCAGTTG
GAAATGCAACGCAAGTACCAGATGCACGACAAGGATGTGGGGTCTTCGGC
CGTCCAAATTGCGCAGCTTACCAATACGGTGAACTACTTGACAAAGCACG
TACAGACCAACCCCCGCGACTACTCCGCCCGCCGCGGCCTCCTGCAAGCG
GTGAACCTTCGTCGCAAGCTTCTCAACTACGTGTCTAAGAAGAACAAGCC
CGGCGCTATCAAGCTGGCTTCAGAGCTTGGCATTCGTTTCCGTGCACCGG
AGGCCGCGCGGTCTAAGTTCGAGAAGTATCGATTCTATACGAACACCAAG
AGCAAGAAAGCGAAGAATATGCAGGCCGTGGCTGATGCCAGGGCTGCCGA
AGCCGAAGCGGAGGCCAAGGCGTCGATGAAAGCGTGAGCGACTTAACTAT
AAGGAAGGGAGGAAGGACGTGGAAGAGAGGATCTTCCTGTGGGAATGGAG
GAGGAGTGGAACTGCTGTCGACGGCGACTCTTCTGCAGAATAGCAGCAGC
GATAGCGTTGTGAGAGTGCTTTAAGCTCTCACACGTACAAAAAAGAAACA
CACATATATCAATTAAGAAACGGTCGGTGAAGAAAAAAGAAGGAATCG
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Coding sequence (CDS) from alignment at chr13:730792..732939-

>NO13G02650.1 ID=NO13G02650.1|Name=NO13G02650.1|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at chr13:730792..732939- (Nannochloropsis oceanica)
ATGAGGAGGGCTATGAGTCAACATTGTCCTGGCTGCTGTCTTACCAATCC
GCCTAAATTCCTGCCTTCAGACCTTGCTCGTTGCTACGTGTGTGTATCTT
GCCCTGCGCCGACTCACCCTCTGAAACCCACCCCTACAATACCCCTACAC
AGGTTTTCAACCATGCTGTTGCAAAGAGGAGTTTTCCTGAGTTGCCTGCT
CGCCTCAGCGGTGGCTTTTGCGCCGTCCATGCGAGCTCGTGCGGCGACAG
CAGCACAACAAAGGGCAGTCAGCGCGCGCGTGTACGCCGCAGGGCCGGAT
GTGCCGGGAGGTTTGGTGCCCGAGGACGACGAGGAGATCACTGAGACGTT
TACGGAGATTGATGGGGTTGTGTTCGAGGGCGACTTTGAGGATGACTCGG
TGAAGCCGTCACTGACCTCGTTGTTGGAGGACGTTGGTGACGATGGAGGT
GACGGGTTTAAGCTTGACTCTGATGATAGCTTTTTTTCGATCCCGGATTA
TGTGCCTTCGGAGTTACCGGACTTGGCGGCGTTGGGGTCCGGGTTGGAGA
GCAAGAGGGATATGATGAATGAGTTTTCGGAGGGGGGGGAGTTCGATCCG
AATGATGAGAAGATGTACCGCCTGCTGGGATTGGACGCCTTGGACGAGAA
GAAGGCGCGTGTCAACCCCGAAGACTTCACCCTACCCGGAGGCTTTCTCC
TCGAGCAGGCTCAGTTGGAAATGCAACGCAAGTACCAGATGCACGACAAG
GATGTGGGGTCTTCGGCCGTCCAAATTGCGCAGCTTACCAATACGGTGAA
CTACTTGACAAAGCACGTACAGACCAACCCCCGCGACTACTCCGCCCGCC
GCGGCCTCCTGCAAGCGGTGAACCTTCGTCGCAAGCTTCTCAACTACGTG
TCTAAGAAGAACAAGCCCGGCGCTATCAAGCTGGCTTCAGAGCTTGGCAT
TCGTTTCCGTGCACCGGAGGCCGCGCGGTCTAAGTTCGAGAAGTATCGAT
TCTATACGAACACCAAGAGCAAGAAAGCGAAGAATATGCAGGCCGTGGCT
GATGCCAGGGCTGCCGAAGCCGAAGCGGAGGCCAAGGCGTCGATGAAAGC
GTGA
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Synonyms
Publications