NO13G02590, NO13G02590 (gene) Nannochloropsis oceanica

Overview
NameNO13G02590
Unique NameNO13G02590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2148
Alignment locationchr13:718135..720282 +

Link to JBrowse

Properties
Property NameValue
DescriptionChaperone protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:718135..720282 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036869J_dom_sf
IPR001623DnaJ_domain
Homology
[Close]
BLAST of NO13G02590 vs. NCBI_GenBank
Match: EWM21901.1 (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 107.1 bits (266), Expect = 1.100e-19
Identity = 76/140 (54.29%), Postives = 94/140 (67.14%), Query Frame = 0 
Query:    1 MKMKIEEAYAALEIRMGASEEEVKKAFRARALKTHPDRNPNNPNAKEEFQKINNAYKRIIAXXXXXXXXXXXXXXXSYMPEEELFDLFATMFGGQGGPFGV-----MGGHFDMPFGVNFSYSGGGGAEYSFSGSSRGGRY 136
            MKM++E+AY  LEIR+GASEEEV++AFR +AL THPDRNP+ P+AK  FQ+++NAYKRI A    XXXXXXXXXXX  M EE+LF+LF +MFG +  PFGV     MG   +  F + F   G  G    F G    G Y
Sbjct:    1 MKMRLEDAYEVLEIRVGASEEEVRRAFRVKALATHPDRNPDKPDAKAAFQRVSNAYKRITAPDEGXXXXXXXXXXXXXMAEEDLFELFESMFGPRRVPFGVARRDPMG---ETAFQMMFKSGGPFGRFDLFDGGDSSGDY 137
[Close]
BLAST of NO13G02590 vs. NCBI_GenBank
Match: WP_027327444.1 (molecular chaperone DnaJ [Helicobacter pametensis])

HSP 1 Score: 65.5 bits (158), Expect = 3.800e-7
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 0 
Query:    9 YAALEIRMGASEEEVKKAFRARALKTHPDRNPNNPNAKEEFQKINNAYK 58
            Y  LE+R G S++E+KKAFR +A++ HPDRNP+NP A+E F+KIN AY+
Sbjct:    7 YEILELREGCSQDEIKKAFRKKAMQYHPDRNPDNPEAEEMFKKINEAYE 55
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BLAST of NO13G02590 vs. NCBI_GenBank
Match: WP_060663420.1 (molecular chaperone DnaJ [Helicobacter pullorum] >KPH49740.1 molecular chaperone DnaJ [Helicobacter pullorum])

HSP 1 Score: 65.5 bits (158), Expect = 3.800e-7
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 0 
Query:    9 YAALEIRMGASEEEVKKAFRARALKTHPDRNPNNPNAKEEFQKINNAY-------KRIIAXXXXXXXXXXXXXXXSYMPEEELFDLFATMFGGQGGPFG 101
            Y  LE++  AS +E+KKA+R  ALK HPDRNPN+  A+E F+K+N AY       KR I                  M E  +FD+F ++FGG  G FG
Sbjct:    7 YEILELQRNASGDEIKKAYRKMALKYHPDRNPNDKEAEEMFKKVNEAYQILSDKEKRQIYDTYGKKGLESSGFGFGDM-EGSIFDIFNSVFGGGFGGFG 104
[Close]
BLAST of NO13G02590 vs. NCBI_GenBank
Match: WP_026943163.1 (molecular chaperone DnaJ [Helicobacter rodentium])

HSP 1 Score: 64.7 bits (156), Expect = 6.400e-7
Identity = 43/99 (43.43%), Postives = 53/99 (53.54%), Query Frame = 0 
Query:    9 YAALEIRMGASEEEVKKAFRARALKTHPDRNPNNPNAKEEFQKINNAY-------KRIIAXXXXXXXXXXXXXXXSYMPEEELFDLFATMFGGQGGPFG 101
            Y  LEI    S EE+KKA+R  ALK HPDRNP++ NA+E F+KIN AY       KR I                S M E  +FD+F ++F G  G FG
Sbjct:    7 YEILEISRNVSGEEIKKAYRKMALKYHPDRNPDDKNAEEMFKKINEAYQVLSDQEKRQIYDTYGKKGLESSGFGFSDM-EGSIFDIFNSVFSGGLGGFG 104
[Close]
BLAST of NO13G02590 vs. NCBI_GenBank
Match: WP_002695413.1 (molecular chaperone DnaJ [Treponema phagedenis] >EFW39185.1 DnaJ domain protein [Treponema phagedenis F0421])

HSP 1 Score: 64.3 bits (155), Expect = 8.400e-7
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 0 
Query:    5 IEEAYAALEIRMGASEEEVKKAFRARALKTHPDRNPNNPNAKEEFQKINNAY 57
            + + Y  L +   AS++E+KKAFR +ALK HPD+NPNNP A+EEF+KIN AY
Sbjct:    1 MNDYYKILGVSATASDDEIKKAFRNKALKYHPDKNPNNPRAEEEFKKINEAY 52
[Close]
BLAST of NO13G02590 vs. NCBI_GenBank
Match: WP_024753002.1 (hypothetical protein [Treponema phagedenis] >CEM61313.1 DnaJ domain protein [Treponema phagedenis])

HSP 1 Score: 64.3 bits (155), Expect = 8.400e-7
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 0 
Query:    5 IEEAYAALEIRMGASEEEVKKAFRARALKTHPDRNPNNPNAKEEFQKINNAY 57
            + + Y  L +   AS++E+KKAFR +ALK HPD+NPNNP A+EEF+KIN AY
Sbjct:    1 MNDYYKILGVSATASDDEIKKAFRNKALKYHPDKNPNNPRAEEEFKKINEAY 52
[Close]
BLAST of NO13G02590 vs. NCBI_GenBank
Match: XP_791429.4 (PREDICTED: stress-induced-phosphoprotein 1 [Strongylocentrotus purpuratus])

HSP 1 Score: 64.3 bits (155), Expect = 8.400e-7
Identity = 33/97 (34.02%), Postives = 61/97 (62.89%), Query Frame = 0 
Query:    1 MKMKIEEAYAALEIRMGASEEEVKKAFRARALKTHPDRNPNNPNAKEEFQKINNAYKRIIAXXXXXXXXXXXXXXXSYMPEEELFDLFATMFGGQGG 98
            M++   E+Y  LE+  G+S++E++ A++ +ALK HPD++ N+P+A ++FQ+I++AY+R++                  +  E++FDLFA +F G  G
Sbjct:    1 MEISRRESYRILEVEEGSSKDEIRTAYKKQALKWHPDKHKNSPSATQKFQEISSAYERLMKPEQIEIS----------LTMEQMFDLFAHVFCGNRG 87
The following BLAST results are available for this feature:
BLAST of NO13G02590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM21901.11.100e-1954.29chaperone protein [Nannochloropsis gaditana][more]
WP_027327444.13.800e-759.18molecular chaperone DnaJ [Helicobacter pametensis][more]
WP_060663420.13.800e-741.41molecular chaperone DnaJ [Helicobacter pullorum] >... [more]
WP_026943163.16.400e-743.43molecular chaperone DnaJ [Helicobacter rodentium][more]
WP_002695413.18.400e-757.69molecular chaperone DnaJ [Treponema phagedenis] >E... [more]
WP_024753002.18.400e-757.69hypothetical protein [Treponema phagedenis] >CEM61... [more]
XP_791429.48.400e-734.02PREDICTED: stress-induced-phosphoprotein 1 [Strong... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR024ncniR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001635NSK001635Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02590.1NO13G02590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650851gene_6751Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|570821gene_11400Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100070g9gene8515Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02590.1NO13G02590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02590 ID=NO13G02590|Name=NO13G02590|organism=Nannochloropsis oceanica|type=gene|length=2148bp
AAGCAACGGAGACCCGCGCGGGGTTTTGACTCGCGGCGAGAGAATGGGTC
ACCTCGATCCTGCTGCCTTCCATGAACTTTGATGCACTTGCTTGCCCCTC
GCATAACTGTCCCCGAGCGCACACCATACCGCCACAGACAAGACAAAGAG
CAGTATCGTTTCTGTACCTTGTCGCCAGCAGGGGGAGTTTTGGTTCAATG
CAGGCACTCTTTTACACACGTGGTGAAGCGAAGCAAAATGATCGAAAGCT
TCGAATCATCATGTGTGGCTGGGTGCGTCGCCTGTGCGGCCTGCCTCCAC
GGCCAATAGTTCGTTGGGCGCCCGCCCACACTCACGCTACCGCCATGGTA
TTAGCACATACTCATCCGTGTGTGATTCCTTTGAATGCGGATTGTTGCCA
GGGTCTAGGATGATGCAAGTTTACTAGTACTTTTGATCTTGCCCCCCACC
CAGGCCACCCCTCTTTCCCTCCATGCCCGCGTAGAGCAGGCATTAATTCT
TTTATGGCGCTTCTTTGCTATCAGAGGAATAGTTCTAGATGCCTGTACTC
CGTACTATGCATGCGCTCCTGGGCGGTAGAACTCTTTTGACAATGTTGTC
ATACACCCTCTCCTTACCCTGCCCTCACTTACCGCGAAGGTACCTTATCA
TTCACCCTTACCTCTCTTTATTTCCTTCATTCCCGCTTCTCTTAAGGAAT
CATGAAGATGAAAATTGAGGAGGCGTACGCAGCGCTGGAGATTCGCATGG
GGGCAAGCGAGGAAGAGGTCAAGAAGGCCTTCCGCGCGCGCGCACTGAAG
ACTCATCCTGATCGGAACCCTAACAACCCAAATGCCAAGGAAGAATTCCA
GAAGATCAATAATGCATATAAAAGAATAATTGCGGCTCAGGACGAGAGCA
GCAGTGATGAAGAAGGAGGAGACGGGAGCAGCTACATGCCGGAAGAGGAA
CTCTTTGACTTGTTTGCCACGATGTTTGGAGGGCAAGGAGGGCCCTTTGG
GGTTATGGGTGGTCATTTTGACATGCCCTTCGGCGTAAATTTTAGTTATA
GTGGAGGAGGGGGTGCAGAGTATTCTTTTTCGGGGTCGAGCCGAGGAGGG
AGGTACGTGGTGGAGTCGGACTCAGAGGAGGAGGACAGCGACGAGTATTA
TAGCGAGGACGACGAGAGTGAGGATGATGACGACGACGATTTGTTTCAGC
AGTTGCTCTTTGAGCATATGATGATGGGGAGGGGCATGGGGGGAATAGGG
GCCATGGGGGGACGGAGGGGCGGGGGGAGGGGAAGTGGTGGGGGAAGGAG
TGGAGGCCCGAGTCAACGGGGAGCCGGTGGAAGAGGAGGAAAGGGAGGAG
GGGGCTCTCGGTATGTGACGGTGGAGGGTGTGATGGAAGAGTTGATGGGT
GGTGCAATTCCGGGAATGGGAATTAGGGATATGGGAGGAAGGAGTGGTAG
TGGGGCCGGTCGTCGTGGACGCCATGGCGCGGTTCATGCGCAGCAGCACT
GGGGGAGGCAGAGGCAGGAGGAAGAGGAGGTGGAGCATCAGGGTGGAGTG
AAGCCGGGGTCGGCAGCAAAGCGACGAGAGAGGCGAAAGAGAGCACAGGG
AAAGTCTGCCGGTGTAGGTGGAGGAGGAGGGAAAGGAGGGGAGGCGGTAG
CAGCACCGACCCCAAAGCCGGCAACGGTCTCTTCGTCTGGTGGTAGTGAT
CGCAAGAAGAAGAACAAGAAGAATAGAGGATAAAGTGGTGGTGTTGATAA
AGACGAGGGGACGGAAATGAGGGGATGTGTGTCTAGATAGAGGAGGAGAG
GAATCTTGCCCTCTTTACGTCAGCCGCGCACGTGTCTGTCCCCATCTTCA
TTGGAGAGAGGGAAAAGAAAACGGCGAGGGCGTAAAGGATGCCCAAGTAC
ATACTGAGAGGGGTGAATGTGAGGACAAAAGAAATAGGGGGTAAACTATA
ACAGGGAAAAGTTGGGAAAATGAGGATGCGCATACCGGAGAAAGAGAGAA
GGAGTTGAGATAGCAGGTTACATGTCTGTGCCGTGGGAGAGTTGATAGGG
TGCATGTTGGTGCTGCTGACACATAACCCAGCCCGCGAGCAATCAATGAA
ATAATAGATAAATAGACAACTTGGATGTAGTCGAAAGCACCGATGCCT
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protein sequence of NO13G02590.1

>NO13G02590.1-protein ID=NO13G02590.1-protein|Name=NO13G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MKMKIEEAYAALEIRMGASEEEVKKAFRARALKTHPDRNPNNPNAKEEFQ
KINNAYKRIIAAQDESSSDEEGGDGSSYMPEEELFDLFATMFGGQGGPFG
VMGGHFDMPFGVNFSYSGGGGAEYSFSGSSRGGRYVVESDSEEEDSDEYY
SEDDESEDDDDDDLFQQLLFEHMMMGRGMGGIGAMGGRRGGGRGSGGGRS
GGPSQRGAGGRGGKGGGGSRYVTVEGVMEELMGGAIPGMGIRDMGGRSGS
GAGRRGRHGAVHAQQHWGRQRQEEEEVEHQGGVKPGSAAKRRERRKRAQG
KSAGVGGGGGKGGEAVAAPTPKPATVSSSGGSDRKKKNKKNRG*
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Synonyms
Publications