NO13G02590.1, NO13G02590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02590.1
Unique NameNO13G02590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2148
Alignment locationchr13:718135..720282 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:718135..720282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02590.1 vs.
Match: EWM21901.1 (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 94.4 bits (233), Expect = 7.600e-16
Identity = 128/347 (36.89%), Postives = 166/347 (47.84%), Query Frame = 0 
Query:    1 MKMKIEEAYAALEIRMGASEEEVKKAFRARALKTHPDRNPNNPNAKEEFQKINNAYKRIIAAQDESSSDEEGGDGSSYMPEEELFDLFATMFGGQGGPFGV-----MGGHFDMPFGVNFSYSGGGGAEYSFSGSSRGGRYVVESDSEEEDSDEYYSEDDESEDDDDDDLFQQLLFEHMMMGRGMGGIGAMGGRRGGGRGS------------GGGRSGGPSQRGAGGRGGKGGGGSRYVTVEGVMEELMGGAIPGMGIRDMGGRSGSGA-GRRGRHGAVHAQQHWGRQRQEEEEVEHQGGVKPGSAAKRRERRKRAQGKSAGVGGGGGKG-GEAVAAPTPKPATVSS 329
            MKM++E+AY  LEIR+GASEEEV++AFR +AL THPDRNP+ P+AK  FQ+++NAYKRI A  +     E   +G  YM EE+LF+LF +MFG +  PFGV     MG   +  F + F   G  G    F G    G Y    DSEE   D    E+ ESE D+  D F ++LF   +M  G       G  R GGRGS            G       +Q G G       G +R             G+ P    RD   R G  A      HGAV A    G   ++  + + Q   +P  +AKRR RR +A+    GV      G  EA A+   K A  +S
Sbjct:    1 MKMRLEDAYEVLEIRVGASEEEVRRAFRVKALATHPDRNPDKPDAKAAFQRVSNAYKRITAPDEGEDEGESEDEGEEYMAEEDLFELFESMFGPRRVPFGVARRDPMG---ETAFQMMFKSGGPFGRFDLFDGGDSSGDYEESCDSEEISYD-VELEESESEGDNKLDTFHEILFLQHLMSDG-------GHSRYGGRGSGRVFDEDDAFDYGNIEVTRRAQSGHGREADNRRGRNR------------PGSPPARRARDEFHRQGPAARPHPAPHGAVPASCTSG--VRDHLDGKEQRKCEPSQSAKRRARRMKARQAGIGVSTSRSDGKREASASAASKTAQKAS 322
The following BLAST results are available for this feature:
BLAST of NO13G02590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21901.17.600e-1636.89chaperone protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02590NO13G02590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02590.1NO13G02590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02590.1.cds1NO13G02590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02590.1 ID=NO13G02590.1|Name=NO13G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp
AAGCAACGGAGACCCGCGCGGGGTTTTGACTCGCGGCGAGAGAATGGGTC
ACCTCGATCCTGCTGCCTTCCATGAACTTTGATGCACTTGCTTGCCCCTC
GCATAACTGTCCCCGAGCGCACACCATACCGCCACAGACAAGACAAAGAG
CAGTATCGTTTCTGTACCTTGTCGCCAGCAGGGGGAGTTTTGGTTCAATG
CAGGCACTCTTTTACACACGTGGTGAAGCGAAGCAAAATGATCGAAAGCT
TCGAATCATCATGTGTGGCTGGGTGCGTCGCCTGTGCGGCCTGCCTCCAC
GGCCAATAGTTCGTTGGGCGCCCGCCCACACTCACGCTACCGCCATGGTA
TTAGCACATACTCATCCGTGTGTGATTCCTTTGAATGCGGATTGTTGCCA
GGGTCTAGGATGATGCAAGTTTACTAGTACTTTTGATCTTGCCCCCCACC
CAGGCCACCCCTCTTTCCCTCCATGCCCGCGTAGAGCAGGCATTAATTCT
TTTATGGCGCTTCTTTGCTATCAGAGGAATAGTTCTAGATGCCTGTACTC
CGTACTATGCATGCGCTCCTGGGCGGTAGAACTCTTTTGACAATGTTGTC
ATACACCCTCTCCTTACCCTGCCCTCACTTACCGCGAAGGTACCTTATCA
TTCACCCTTACCTCTCTTTATTTCCTTCATTCCCGCTTCTCTTAAGGAAT
CATGAAGATGAAAATTGAGGAGGCGTACGCAGCGCTGGAGATTCGCATGG
GGGCAAGCGAGGAAGAGGTCAAGAAGGCCTTCCGCGCGCGCGCACTGAAG
ACTCATCCTGATCGGAACCCTAACAACCCAAATGCCAAGGAAGAATTCCA
GAAGATCAATAATGCATATAAAAGAATAATTGCGGCTCAGGACGAGAGCA
GCAGTGATGAAGAAGGAGGAGACGGGAGCAGCTACATGCCGGAAGAGGAA
CTCTTTGACTTGTTTGCCACGATGTTTGGAGGGCAAGGAGGGCCCTTTGG
GGTTATGGGTGGTCATTTTGACATGCCCTTCGGCGTAAATTTTAGTTATA
GTGGAGGAGGGGGTGCAGAGTATTCTTTTTCGGGGTCGAGCCGAGGAGGG
AGGTACGTGGTGGAGTCGGACTCAGAGGAGGAGGACAGCGACGAGTATTA
TAGCGAGGACGACGAGAGTGAGGATGATGACGACGACGATTTGTTTCAGC
AGTTGCTCTTTGAGCATATGATGATGGGGAGGGGCATGGGGGGAATAGGG
GCCATGGGGGGACGGAGGGGCGGGGGGAGGGGAAGTGGTGGGGGAAGGAG
TGGAGGCCCGAGTCAACGGGGAGCCGGTGGAAGAGGAGGAAAGGGAGGAG
GGGGCTCTCGGTATGTGACGGTGGAGGGTGTGATGGAAGAGTTGATGGGT
GGTGCAATTCCGGGAATGGGAATTAGGGATATGGGAGGAAGGAGTGGTAG
TGGGGCCGGTCGTCGTGGACGCCATGGCGCGGTTCATGCGCAGCAGCACT
GGGGGAGGCAGAGGCAGGAGGAAGAGGAGGTGGAGCATCAGGGTGGAGTG
AAGCCGGGGTCGGCAGCAAAGCGACGAGAGAGGCGAAAGAGAGCACAGGG
AAAGTCTGCCGGTGTAGGTGGAGGAGGAGGGAAAGGAGGGGAGGCGGTAG
CAGCACCGACCCCAAAGCCGGCAACGGTCTCTTCGTCTGGTGGTAGTGAT
CGCAAGAAGAAGAACAAGAAGAATAGAGGATAAAGTGGTGGTGTTGATAA
AGACGAGGGGACGGAAATGAGGGGATGTGTGTCTAGATAGAGGAGGAGAG
GAATCTTGCCCTCTTTACGTCAGCCGCGCACGTGTCTGTCCCCATCTTCA
TTGGAGAGAGGGAAAAGAAAACGGCGAGGGCGTAAAGGATGCCCAAGTAC
ATACTGAGAGGGGTGAATGTGAGGACAAAAGAAATAGGGGGTAAACTATA
ACAGGGAAAAGTTGGGAAAATGAGGATGCGCATACCGGAGAAAGAGAGAA
GGAGTTGAGATAGCAGGTTACATGTCTGTGCCGTGGGAGAGTTGATAGGG
TGCATGTTGGTGCTGCTGACACATAACCCAGCCCGCGAGCAATCAATGAA
ATAATAGATAAATAGACAACTTGGATGTAGTCGAAAGCACCGATGCCT
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protein sequence of NO13G02590.1

>NO13G02590.1-protein ID=NO13G02590.1-protein|Name=NO13G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MKMKIEEAYAALEIRMGASEEEVKKAFRARALKTHPDRNPNNPNAKEEFQ
KINNAYKRIIAAQDESSSDEEGGDGSSYMPEEELFDLFATMFGGQGGPFG
VMGGHFDMPFGVNFSYSGGGGAEYSFSGSSRGGRYVVESDSEEEDSDEYY
SEDDESEDDDDDDLFQQLLFEHMMMGRGMGGIGAMGGRRGGGRGSGGGRS
GGPSQRGAGGRGGKGGGGSRYVTVEGVMEELMGGAIPGMGIRDMGGRSGS
GAGRRGRHGAVHAQQHWGRQRQEEEEVEHQGGVKPGSAAKRRERRKRAQG
KSAGVGGGGGKGGEAVAAPTPKPATVSSSGGSDRKKKNKKNRG*
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mRNA from alignment at chr13:718135..720282+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02590.1 ID=NO13G02590.1|Name=NO13G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp|location=Sequence derived from alignment at chr13:718135..720282+ (Nannochloropsis oceanica)
AAGCAACGGAGACCCGCGCGGGGTTTTGACTCGCGGCGAGAGAATGGGTC
ACCTCGATCCTGCTGCCTTCCATGAACTTTGATGCACTTGCTTGCCCCTC
GCATAACTGTCCCCGAGCGCACACCATACCGCCACAGACAAGACAAAGAG
CAGTATCGTTTCTGTACCTTGTCGCCAGCAGGGGGAGTTTTGGTTCAATG
CAGGCACTCTTTTACACACGTGGTGAAGCGAAGCAAAATGATCGAAAGCT
TCGAATCATCATGTGTGGCTGGGTGCGTCGCCTGTGCGGCCTGCCTCCAC
GGCCAATAGTTCGTTGGGCGCCCGCCCACACTCACGCTACCGCCATGGTA
TTAGCACATACTCATCCGTGTGTGATTCCTTTGAATGCGGATTGTTGCCA
GGGTCTAGGATGATGCAAGTTTACTAGTACTTTTGATCTTGCCCCCCACC
CAGGCCACCCCTCTTTCCCTCCATGCCCGCGTAGAGCAGGCATTAATTCT
TTTATGGCGCTTCTTTGCTATCAGAGGAATAGTTCTAGATGCCTGTACTC
CGTACTATGCATGCGCTCCTGGGCGGTAGAACTCTTTTGACAATGTTGTC
ATACACCCTCTCCTTACCCTGCCCTCACTTACCGCGAAGGTACCTTATCA
TTCACCCTTACCTCTCTTTATTTCCTTCATTCCCGCTTCTCTTAAGGAAT
CATGAAGATGAAAATTGAGGAGGCGTACGCAGCGCTGGAGATTCGCATGG
GGGCAAGCGAGGAAGAGGTCAAGAAGGCCTTCCGCGCGCGCGCACTGAAG
ACTCATCCTGATCGGAACCCTAACAACCCAAATGCCAAGGAAGAATTCCA
GAAGATCAATAATGCATATAAAAGAATAATTGCGGCTCAGGACGAGAGCA
GCAGTGATGAAGAAGGAGGAGACGGGAGCAGCTACATGCCGGAAGAGGAA
CTCTTTGACTTGTTTGCCACGATGTTTGGAGGGCAAGGAGGGCCCTTTGG
GGTTATGGGTGGTCATTTTGACATGCCCTTCGGCGTAAATTTTAGTTATA
GTGGAGGAGGGGGTGCAGAGTATTCTTTTTCGGGGTCGAGCCGAGGAGGG
AGGTACGTGGTGGAGTCGGACTCAGAGGAGGAGGACAGCGACGAGTATTA
TAGCGAGGACGACGAGAGTGAGGATGATGACGACGACGATTTGTTTCAGC
AGTTGCTCTTTGAGCATATGATGATGGGGAGGGGCATGGGGGGAATAGGG
GCCATGGGGGGACGGAGGGGCGGGGGGAGGGGAAGTGGTGGGGGAAGGAG
TGGAGGCCCGAGTCAACGGGGAGCCGGTGGAAGAGGAGGAAAGGGAGGAG
GGGGCTCTCGGTATGTGACGGTGGAGGGTGTGATGGAAGAGTTGATGGGT
GGTGCAATTCCGGGAATGGGAATTAGGGATATGGGAGGAAGGAGTGGTAG
TGGGGCCGGTCGTCGTGGACGCCATGGCGCGGTTCATGCGCAGCAGCACT
GGGGGAGGCAGAGGCAGGAGGAAGAGGAGGTGGAGCATCAGGGTGGAGTG
AAGCCGGGGTCGGCAGCAAAGCGACGAGAGAGGCGAAAGAGAGCACAGGG
AAAGTCTGCCGGTGTAGGTGGAGGAGGAGGGAAAGGAGGGGAGGCGGTAG
CAGCACCGACCCCAAAGCCGGCAACGGTCTCTTCGTCTGGTGGTAGTGAT
CGCAAGAAGAAGAACAAGAAGAATAGAGGATAAAGTGGTGGTGTTGATAA
AGACGAGGGGACGGAAATGAGGGGATGTGTGTCTAGATAGAGGAGGAGAG
GAATCTTGCCCTCTTTACGTCAGCCGCGCACGTGTCTGTCCCCATCTTCA
TTGGAGAGAGGGAAAAGAAAACGGCGAGGGCGTAAAGGATGCCCAAGTAC
ATACTGAGAGGGGTGAATGTGAGGACAAAAGAAATAGGGGGTAAACTATA
ACAGGGAAAAGTTGGGAAAATGAGGATGCGCATACCGGAGAAAGAGAGAA
GGAGTTGAGATAGCAGGTTACATGTCTGTGCCGTGGGAGAGTTGATAGGG
TGCATGTTGGTGCTGCTGACACATAACCCAGCCCGCGAGCAATCAATGAA
ATAATAGATAAATAGACAACTTGGATGTAGTCGAAAGCACCGATGCCT
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Coding sequence (CDS) from alignment at chr13:718135..720282+

>NO13G02590.1 ID=NO13G02590.1|Name=NO13G02590.1|organism=Nannochloropsis oceanica|type=CDS|length=1032bp|location=Sequence derived from alignment at chr13:718135..720282+ (Nannochloropsis oceanica)
ATGAAGATGAAAATTGAGGAGGCGTACGCAGCGCTGGAGATTCGCATGGG
GGCAAGCGAGGAAGAGGTCAAGAAGGCCTTCCGCGCGCGCGCACTGAAGA
CTCATCCTGATCGGAACCCTAACAACCCAAATGCCAAGGAAGAATTCCAG
AAGATCAATAATGCATATAAAAGAATAATTGCGGCTCAGGACGAGAGCAG
CAGTGATGAAGAAGGAGGAGACGGGAGCAGCTACATGCCGGAAGAGGAAC
TCTTTGACTTGTTTGCCACGATGTTTGGAGGGCAAGGAGGGCCCTTTGGG
GTTATGGGTGGTCATTTTGACATGCCCTTCGGCGTAAATTTTAGTTATAG
TGGAGGAGGGGGTGCAGAGTATTCTTTTTCGGGGTCGAGCCGAGGAGGGA
GGTACGTGGTGGAGTCGGACTCAGAGGAGGAGGACAGCGACGAGTATTAT
AGCGAGGACGACGAGAGTGAGGATGATGACGACGACGATTTGTTTCAGCA
GTTGCTCTTTGAGCATATGATGATGGGGAGGGGCATGGGGGGAATAGGGG
CCATGGGGGGACGGAGGGGCGGGGGGAGGGGAAGTGGTGGGGGAAGGAGT
GGAGGCCCGAGTCAACGGGGAGCCGGTGGAAGAGGAGGAAAGGGAGGAGG
GGGCTCTCGGTATGTGACGGTGGAGGGTGTGATGGAAGAGTTGATGGGTG
GTGCAATTCCGGGAATGGGAATTAGGGATATGGGAGGAAGGAGTGGTAGT
GGGGCCGGTCGTCGTGGACGCCATGGCGCGGTTCATGCGCAGCAGCACTG
GGGGAGGCAGAGGCAGGAGGAAGAGGAGGTGGAGCATCAGGGTGGAGTGA
AGCCGGGGTCGGCAGCAAAGCGACGAGAGAGGCGAAAGAGAGCACAGGGA
AAGTCTGCCGGTGTAGGTGGAGGAGGAGGGAAAGGAGGGGAGGCGGTAGC
AGCACCGACCCCAAAGCCGGCAACGGTCTCTTCGTCTGGTGGTAGTGATC
GCAAGAAGAAGAACAAGAAGAATAGAGGATAA
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Synonyms
Publications