NO13G02410, NO13G02410 (gene) Nannochloropsis oceanica

Overview
NameNO13G02410
Unique NameNO13G02410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr13:667997..668680 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:667997..668680 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO13G02410 vs. NCBI_GenBank
Match: CBJ27373.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 129.0 bits (323), Expect = 1.800e-26
Identity = 80/209 (38.28%), Postives = 115/209 (55.02%), Query Frame = 0
Query:   22 FLSVGEPYQ-DKSDLPERWKGKRMVCGGTPQE----TFSRLKYPEGEPYVAVPLYIEAESIDTRKAGFGSKDASKRDEFTNFIRTEQYREVLRKELASLKNSKCHWRQQQQIHGHD-DKGTTRDLANGASK-TFLYDIGRSRTTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQVKSMPPRAAPGSCHKAFMDKSHL 224
            ++S+G+ Y+ +K  LP+RWKGK +     P+      FSRL+Y   EPY  +  + + + +D RK GFG+KDA +  EFT  IRTEQYR++LR E   ++  +   + Q     ++ D    R   +G  +   LYD+GRS+ T FDPK  RDR+Y  S     G + R  PYR  +++IG+G W      P   P    K F DKSHL
Sbjct:    7 YISIGDMYKGNKIILPDRWKGKGLSVPQLPKNAENGNFSRLEY-RSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEKHRDPAKDQAAAQKYEKDCAEHRAFPDGLKEIEHLYDVGRSQVTEFDPKNSRDRFYTLSI----GQEKRRGPYRTMAQDIGSGAWGHTYQSPEHGPIHHVKFFYDKSHL 210          
BLAST of NO13G02410 vs. NCBI_GenBank
Match: CBJ26021.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 128.3 bits (321), Expect = 3.100e-26
Identity = 81/232 (34.91%), Postives = 120/232 (51.72%), Query Frame = 0
Query:    1 MYSIKRRHPKLVDMPDGEPQPFLSVGEPYQDKSDLPERWKGKRMVCGGTPQE----TFSRLKYPEGEPYVAVPLYIEAESIDTRKAGFGSKDASKRDEFTNFIRTEQYREVLRKELASLKNSKCHWRQQQQIHGHDDK-GTTRDLANGASK-TFLYDIGRSRTTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQVKSMPPRAAPGSCHKAFMDKSHLKTA 227
            MYS KR +  +V     E   F+SVG+PY++   LP RWKGK+    G P       F++LKY   EP+     + + + +  R  GFG+KDA KR EFT  IRT+QYRE+LR+E   +  S+    +++++     K  ++R    G  +   LYD+GRS    F+P R+ D +Y         +  R  PYR  +++IG   W  +   P   P    K F D+SHL+ A
Sbjct:    1 MYSTKRVNKNIV-----EGNRFISVGDPYKELRRLPGRWKGKQFQTEGCPANADNGNFAKLKY-SSEPFQETERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYD----FQKSTGKRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEVA 222          
BLAST of NO13G02410 vs. NCBI_GenBank
Match: XP_024581475.1 (hypothetical protein PHALS_01430 [Plasmopara halstedii] >CEG45106.1 hypothetical protein PHALS_01430 [Plasmopara halstedii])

HSP 1 Score: 115.9 bits (289), Expect = 1.600e-22
Identity = 83/218 (38.07%), Postives = 117/218 (53.67%), Query Frame = 0
Query:   20 QPFLSVGEPYQDKSDL---PERWKGKRMVCGGTPQETFSRLKYPEGEPYVAVPL-----YIEAESIDTRKAGFGSKDASKRDEFTNFIRTEQYREVLRKELASLKNSKCHWRQQQQIH---GHDDKGTTRDLANGASKT-FLYDIGRSRTTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQVKSMPPRAAPGSCHKAFMDKSHLKT 226
            + +L++G+PY+D   +     R KGK+ +     ++T + L Y E + Y + PL     Y++++ +DTRK+GFGSKDAS+RDEF + IRTEQYRE L  E   L   K    Q+   +     +    +RD   G  KT  LYDIGRS+ T F+ K  RD +Y   A   +  K    P+ L+SE IG G   V +  P    G+  K F D SHL T
Sbjct:   13 ESYLTIGDPYRDPHIIEGKSSRHKGKQ-IFTVPAKDTSNGLGYFEKKSYTSDPLQDNTAYLKSQPMDTRKSGFGSKDASRRDEFMSHIRTEQYRETLHTENKILDKQK----QKDPPYFSAALNSLNQSRDFPEGLCKTKHLYDIGRSQNTEFNQKSHRDTFYTMRA-GNSQYKRNNGPFMLTSESIGLGADDVANNRP-TPKGASTKQFFDHSHLHT 223          
BLAST of NO13G02410 vs. NCBI_GenBank
Match: XP_002906755.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY66156.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 111.7 bits (278), Expect = 3.000e-21
Identity = 79/215 (36.74%), Postives = 110/215 (51.16%), Query Frame = 0
Query:   20 QPFLSVGEPYQDK---SDLPERWKGKRMVCGGTPQETFSRLKYPEGEPYVAVPL-----YIEAESIDTRKAGFGSKDASKRDEFTNFIRTEQYREVLRKELASLKNSKCHWRQQQQIHGHDDKGTTRDLANGASKT-FLYDIGRSRTTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQVKSMPPRAAPGSCHKAFMDKSHLKT 226
            Q +L++G+PY+D         R KGK+++     + T +   Y E + Y + PL     Y++++ +DTRK+GFGSKDAS+RDEF + IRTEQYRE L  E+  L   K +          D          G  +T  LYDIGRS+TT F+ K  RD +Y       +  K    P+ L+SE IG G   V    P    G+  + F D SHL T
Sbjct:   13 QSYLTIGDPYRDPHLIESKNSRHKGKQILT-VPAKNTCNGSGYFEKKTYASDPLQDNTAYVKSQPMDTRKSGFGSKDASRRDEFMSHIRTEQYRETLHTEMKILDKQKQN-DPPGLFDALDSLNQNHHFPEGLQETKHLYDIGRSQTTEFNQKSHRDTFYTMRV-GNSHYKRNNGPFMLTSESIGLGADDVTGNRP-TPKGASTRQFYDHSHLHT 223          
BLAST of NO13G02410 vs. NCBI_GenBank
Match: CCA14133.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 110.5 bits (275), Expect = 6.800e-21
Identity = 82/215 (38.14%), Postives = 116/215 (53.95%), Query Frame = 0
Query:   22 FLSVGEPYQDK---SDLPERWKGKRMVCGGTPQETFSRLKYPEGEPYVAVPL-----YIEAESIDTRKAGFGSKDASKRDEFTNFIRTEQYREVLRKELASLKNSKCHWRQQQQIHGHDD---KGTTRDLANGASKT-FLYDIGRSRTTPFDPKRRRDRYYQ-RSAPATNGSKPRFSPYRLSSEEIGAGLWQVKSMPPRAAPGSCHKAFMDKSHL 224
            +L++G+PY+D         R+KGK+M+     + T + L + + + Y + PL     Y+  + +DTRK GFGSKDA +RDEF + IRTEQYRE L  EL   +  K   R ++++   +    + T      G  +T FLYDIGR + T FD K  RDR+Y  RS+ +T+  K    P+ L+SE IG G   V    P     S  K F D SHL
Sbjct:   15 YLAIGDPYKDSHQHDGKDPRFKGKQMMT-IPAKNTCNGLGFFDKKTYSSDPLKDNTMYLTTQPMDTRKKGFGSKDAKRRDEFMSHIRTEQYRETLETELKLHEKQK---RVREELGVQETPIMEETKHPFPQGLVETKFLYDIGRLQVTEFDQKSHRDRFYTIRSSESTH--KRNNGPFMLTSEMIGLGAEDVVGNKPNPKNAST-KQFYDHSHL 222          
BLAST of NO13G02410 vs. NCBI_GenBank
Match: XP_008907541.1 (hypothetical protein PPTG_13549 [Phytophthora parasitica INRA-310] >ETI43633.1 hypothetical protein F443_11487 [Phytophthora parasitica P1569] >ETK83702.1 hypothetical protein L915_11184 [Phytophthora parasitica] >ETL37117.1 hypothetical protein L916_11081 [Phytophthora parasitica] >ETL90288.1 hypothetical protein L917_10981 [Phytophthora parasitica] >ETM43591.1 hypothetical protein L914_11009 [Phytophthora parasitica] >ETN07165.1 hypothetical protein PPTG_13549 [Phytophthora parasitica INRA-310] >ETO72291.1 hypothetical protein F444_11561 [Phytophthora parasitica P1976] >ETP13449.1 hypothetical protein F441_11406 [Phytophthora parasitica CJ01A1] >ETP41519.1 hypothetical protein F442_11383 [Phytophthora parasitica P10297] >KUF77096.1 hypothetical protein AM587_10012956 [Phytophthora nicotianae] >KUF88011.1 Interferon-stimulated 20 kDa exonuclease 2 [Phytophthora nicotianae])

HSP 1 Score: 109.0 bits (271), Expect = 2.000e-20
Identity = 78/213 (36.62%), Postives = 109/213 (51.17%), Query Frame = 0
Query:   20 QPFLSVGEPYQDK---SDLPERWKGKRMVCGGTPQETFSRLKYPEGEPYVAVPL-----YIEAESIDTRKAGFGSKDASKRDEFTNFIRTEQYREVLRKELASLKNSKCHWRQQQQIHGHDDKGTTRDLANGASKT-FLYDIGRSRTTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQVKSMPPRAAPGSCHKAFMDKSHL 224
            Q +L++G+PY+D         R KGK+++     + T +   Y E + Y + PL     Y++++ +DTRK+GFGSKDAS+RDEF + IRTEQYRE L  E+  L   K            D    +     G  +T  LYDIGRS+TT F+ K  RD +Y       +  K    P+ L+SE IG G   V    P    G+  + F D SHL
Sbjct:   13 QSYLTIGDPYRDPHLIESKNSRHKGKQILT-VPAKNTCNGSGYFEKKTYASDPLQDNTAYLKSQPMDTRKSGFGSKDASRRDEFMSHIRTEQYRETLHTEMKILDKQK-QDDPPGLFDALDSLNQSHHFPEGLQETKHLYDIGRSQTTEFNQKSHRDTFYTMRV-GNSQYKRNNGPFMLTSESIGLGADDVTGNRP-TPKGASTRQFYDHSHL 221          
BLAST of NO13G02410 vs. NCBI_GenBank
Match: OWZ22958.1 (hypothetical protein PHMEG_0002262 [Phytophthora megakarya])

HSP 1 Score: 108.6 bits (270), Expect = 2.600e-20
Identity = 77/213 (36.15%), Postives = 109/213 (51.17%), Query Frame = 0
Query:   20 QPFLSVGEPYQDKSDLP---ERWKGKRMVCGGTPQETFSRLKYPEGEPYVAVPL-----YIEAESIDTRKAGFGSKDASKRDEFTNFIRTEQYREVLRKELASLKNSKCHWRQQQQIHGHDDKGTTRDLANGASKT-FLYDIGRSRTTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQVKSMPPRAAPGSCHKAFMDKSHL 224
            Q +L++G+PY+D   +     R KGK+++     + T + + Y E + Y + PL     Y++ + +DTRK+GFGSKDAS+RDEF + IRTEQYRE L  E+  L   K +          D          G  +T  LYDIGRS+ T F+ K  RD +Y       +  K    P+ L+SE IG G   V    P    G+  + F D SHL
Sbjct:   13 QSYLTIGDPYRDPHQIEGKNTRHKGKQILT-VPAKNTCNGMGYFEKKTYASDPLQDNTAYLKTQPMDTRKSGFGSKDASRRDEFMSHIRTEQYRETLHTEMKILDKQKQN-DPPGLFDALDTLNQNHHFPEGLQETKHLYDIGRSQNTEFNQKSHRDTFYTMRV-GNSQYKRNNGPFMLTSESIGLGADDVTGNRP-DPKGASTRQFYDHSHL 221          
BLAST of NO13G02410 vs. NCBI_GenBank
Match: XP_009515813.1 (hypothetical protein PHYSODRAFT_477024 [Phytophthora sojae] >EGZ28538.1 hypothetical protein PHYSODRAFT_477024 [Phytophthora sojae])

HSP 1 Score: 107.8 bits (268), Expect = 4.400e-20
Identity = 77/215 (35.81%), Postives = 109/215 (50.70%), Query Frame = 0
Query:   20 QPFLSVGEPYQDKSDLP---ERWKGKRMVCGGTPQETFSRLKYPEGEPYVAVPL-----YIEAESIDTRKAGFGSKDASKRDEFTNFIRTEQYREVLRKELASLKNSKCHWRQQQQIHGHDDKGTTRDLANGASKT-FLYDIGRSRTTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQVKSMPPRAAPGSCHKAFMDKSHLKT 226
            Q +L++G+PY+D   +     R KGK+++     + T +   Y E + Y + PL     Y++++ +D RK+GFGSKDAS+RDEF + +RTEQYRE L  E+  L   K +          D          G  +T  LYDIGRS+ T F+ K  RD +Y       +  K    P+ L+SE IG G   V    P    G+  K F D SHL T
Sbjct:   13 QSYLTIGDPYRDPHLIEGKNSRHKGKQILT-VPAKNTCNGSGYFEKKTYSSDPLQDNTAYLKSQPMDLRKSGFGSKDASRRDEFMSHVRTEQYRETLHTEMKILDKQKQN-DPPGMFDALDSLNQNHHFPEGLQETKHLYDIGRSQNTEFNQKSHRDTFYTMRI-GNSQYKRNNGPFMLTSESIGLGADDVSGNRPN-PKGASTKQFYDHSHLHT 223          
BLAST of NO13G02410 vs. NCBI_GenBank
Match: XP_009039968.1 (hypothetical protein AURANDRAFT_66549 [Aureococcus anophagefferens] >EGB05320.1 hypothetical protein AURANDRAFT_66549 [Aureococcus anophagefferens])

HSP 1 Score: 107.5 bits (267), Expect = 5.700e-20
Identity = 76/215 (35.35%), Postives = 107/215 (49.77%), Query Frame = 0
Query:   22 FLSVGEPY-QDKSDLPERWKGKRMVCGGTPQET------FSRLKYP-EGEPYVAVPLYIEAESIDTRKAGFGSKDASKRDEFTNFIRTEQYREVLRKELASLKNSKCHWRQQQQIHGHDDK-----GTTRDLANGASKTFLYDIGRSRTTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQVKSMPPRAAPGSCHKAFMDKSHL 224
            +++VG+PY   K  LP RWK K+      P         FS   +  + E Y     Y++ +  D RK GFG+ DAS+RDEF+  IRTEQYRE L+KE  +  N       ++ +   + K      T +++ N      LYD+GRS  T FDPK  RD++Y      T   + R    R +S++IG G W  K   P  +  S  K F D+SHL
Sbjct:   18 YITVGDPYIGTKDKLPLRWKEKQFHVPQVPSNAGEGYFGFSGKAFSYQSELYTEQRPYMKTQPPDKRKLGFGTHDASRRDEFSQTIRTEQYRETLKKEGRANNNGYDEDAIEELMKKENAKVKKFVETKKEIGN------LYDVGRSIHTEFDPKNGRDQFYSMKHGYT--YEKRMGNNRTASQDIGDGAWNFKYSKPEFSAPSQVKNFFDQSHL 224          
BLAST of NO13G02410 vs. NCBI_GenBank
Match: XP_012210984.1 (hypothetical protein SPRG_16299 [Saprolegnia parasitica CBS 223.65] >KDO18309.1 hypothetical protein SPRG_16299 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 107.5 bits (267), Expect = 5.700e-20
Identity = 79/217 (36.41%), Postives = 110/217 (50.69%), Query Frame = 0
Query:   22 FLSVGEPYQDKSDL---PERWKGKRM-------VCGGTPQETFSRLKYPEGEPYVAVPLYIEAESIDTRKAGFGSKDASKRDEFTNFIRTEQYREVLRKE--LASLKNSKCHWRQQQQIHGHDDKGTTRDLANGASKT-FLYDIGRSRTTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQVKSMPPRAAPGSCHKAFMDKSHLKT 226
            +LSVG+PY+D   +    +R K K+         C G  +  F R  Y   +P V   +Y++ +  +TRKAGFG+KDAS+RDEF + +RTEQYRE L +E  +A    +K H          D   T      G  +T FLYDIGR++ T F+ K  RD +Y       +  +     + LSSE +G G  QV +    A   +C K F D SHL T
Sbjct:   15 YLSVGDPYRDPHIIEGKSDRHKSKQFQTAPAKDTCDG--KGYFDRKTY-SSDPLVDGVMYLKTQPPETRKAGFGTKDASRRDEFMSHVRTEQYRETLHREDTIAQTGIAK-HRATHPDEEDEDAVDTKHQFPEGLKETKFLYDIGRTQVTEFNQKSHRDTFYTLRT-GNSQFRRNNGHFVLSSESVGVGASQVGNNGTHAR-NACTKQFYDHSHLHT 225          
The following BLAST results are available for this feature:
BLAST of NO13G02410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 19
Match NameE-valueIdentityDescription
CBJ27373.11.800e-2638.28conserved unknown protein [Ectocarpus siliculosus][more]
CBJ26021.13.100e-2634.91conserved unknown protein [Ectocarpus siliculosus][more]
XP_024581475.11.600e-2238.07hypothetical protein PHALS_01430 [Plasmopara halst... [more]
XP_002906755.13.000e-2136.74conserved hypothetical protein [Phytophthora infes... [more]
CCA14133.16.800e-2138.14conserved hypothetical protein [Albugo laibachii N... [more]
XP_008907541.12.000e-2036.62hypothetical protein PPTG_13549 [Phytophthora para... [more]
OWZ22958.12.600e-2036.15hypothetical protein PHMEG_0002262 [Phytophthora m... [more]
XP_009515813.14.400e-2035.81hypothetical protein PHYSODRAFT_477024 [Phytophtho... [more]
XP_009039968.15.700e-2035.35hypothetical protein AURANDRAFT_66549 [Aureococcus... [more]
XP_012210984.15.700e-2036.41hypothetical protein SPRG_16299 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02410.1NO13G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557687gene_6770Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02410.1NO13G02410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02410 ID=NO13G02410|Name=NO13G02410|organism=Nannochloropsis oceanica|type=gene|length=684bp
ATGTACTCCATTAAGCGCCGCCATCCCAAACTCGTAGATATGCCAGATGG
GGAACCGCAACCCTTCTTATCAGTGGGGGAGCCGTATCAGGACAAGAGCG
ATCTACCGGAACGGTGGAAGGGCAAGCGTATGGTCTGTGGCGGGACGCCC
CAAGAAACGTTTAGCAGGCTCAAGTATCCCGAGGGTGAACCCTATGTGGC
CGTGCCATTGTATATCGAGGCAGAGTCCATCGACACCCGGAAGGCGGGAT
TCGGGAGCAAAGATGCGTCAAAAAGAGACGAGTTTACAAACTTTATTCGC
ACCGAGCAGTATCGTGAGGTGCTCCGCAAGGAGCTGGCATCCCTCAAAAA
TTCGAAATGCCACTGGCGGCAGCAACAGCAGATCCACGGCCACGATGACA
AGGGCACCACCCGGGACTTGGCAAATGGTGCTAGTAAGACCTTCTTGTAC
GACATTGGCCGCAGTCGTACGACCCCCTTTGACCCGAAGCGTCGCCGCGA
TCGCTACTACCAGCGGTCTGCACCTGCGACCAACGGCAGCAAGCCTCGCT
TTAGTCCATACCGTCTTTCATCCGAAGAGATTGGGGCCGGACTGTGGCAA
GTCAAGTCGATGCCGCCACGCGCTGCGCCTGGCTCGTGTCATAAGGCATT
TATGGACAAAAGTCATCTCAAGACTGCGATTTAG
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protein sequence of NO13G02410.1

>NO13G02410.1-protein ID=NO13G02410.1-protein|Name=NO13G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MYSIKRRHPKLVDMPDGEPQPFLSVGEPYQDKSDLPERWKGKRMVCGGTP
QETFSRLKYPEGEPYVAVPLYIEAESIDTRKAGFGSKDASKRDEFTNFIR
TEQYREVLRKELASLKNSKCHWRQQQQIHGHDDKGTTRDLANGASKTFLY
DIGRSRTTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQ
VKSMPPRAAPGSCHKAFMDKSHLKTAI*
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Synonyms
Publications