NO13G02410.1, NO13G02410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02410.1
Unique NameNO13G02410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr13:667997..668680 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:667997..668680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO13G02410.1 vs.
Match: CBJ27373.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 129.0 bits (323), Expect = 1.800e-26
Identity = 80/209 (38.28%), Postives = 115/209 (55.02%), Query Frame = 0 
Query:   22 FLSVGEPYQ-DKSDLPERWKGKRMVCGGTPQET----FSRLKYPEGEPYVAVPLYIEAESIDTRKAGFGSKDASKRDEFTNFIRTEQYREVLRKELASLKNSKCHWRQQQQIHGHD-DKGTTRDLANGASK-TFLYDIGRSRTTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQVKSMPPRAAPGSCHKAFMDKSHL 224
            ++S+G+ Y+ +K  LP+RWKGK +     P+      FSRL+Y   EPY  +  + + + +D RK GFG+KDA +  EFT  IRTEQYR++LR E   ++  +   + Q     ++ D    R   +G  +   LYD+GRS+ T FDPK  RDR+Y  S     G + R  PYR  +++IG+G W      P   P    K F DKSHL
Sbjct:    7 YISIGDMYKGNKIILPDRWKGKGLSVPQLPKNAENGNFSRLEY-RSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEKHRDPAKDQAAAQKYEKDCAEHRAFPDGLKEIEHLYDVGRSQVTEFDPKNSRDRFYTLSI----GQEKRRGPYRTMAQDIGSGAWGHTYQSPEHGPIHHVKFFYDKSHL 210
The following BLAST results are available for this feature:
BLAST of NO13G02410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ27373.11.800e-2638.28conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02410NO13G02410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02410.1NO13G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02410.1.cds1NO13G02410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02410.1 ID=NO13G02410.1|Name=NO13G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=684bp
ATGTACTCCATTAAGCGCCGCCATCCCAAACTCGTAGATATGCCAGATGG
GGAACCGCAACCCTTCTTATCAGTGGGGGAGCCGTATCAGGACAAGAGCG
ATCTACCGGAACGGTGGAAGGGCAAGCGTATGGTCTGTGGCGGGACGCCC
CAAGAAACGTTTAGCAGGCTCAAGTATCCCGAGGGTGAACCCTATGTGGC
CGTGCCATTGTATATCGAGGCAGAGTCCATCGACACCCGGAAGGCGGGAT
TCGGGAGCAAAGATGCGTCAAAAAGAGACGAGTTTACAAACTTTATTCGC
ACCGAGCAGTATCGTGAGGTGCTCCGCAAGGAGCTGGCATCCCTCAAAAA
TTCGAAATGCCACTGGCGGCAGCAACAGCAGATCCACGGCCACGATGACA
AGGGCACCACCCGGGACTTGGCAAATGGTGCTAGTAAGACCTTCTTGTAC
GACATTGGCCGCAGTCGTACGACCCCCTTTGACCCGAAGCGTCGCCGCGA
TCGCTACTACCAGCGGTCTGCACCTGCGACCAACGGCAGCAAGCCTCGCT
TTAGTCCATACCGTCTTTCATCCGAAGAGATTGGGGCCGGACTGTGGCAA
GTCAAGTCGATGCCGCCACGCGCTGCGCCTGGCTCGTGTCATAAGGCATT
TATGGACAAAAGTCATCTCAAGACTGCGATTTAG
back to top

protein sequence of NO13G02410.1

>NO13G02410.1-protein ID=NO13G02410.1-protein|Name=NO13G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MYSIKRRHPKLVDMPDGEPQPFLSVGEPYQDKSDLPERWKGKRMVCGGTP
QETFSRLKYPEGEPYVAVPLYIEAESIDTRKAGFGSKDASKRDEFTNFIR
TEQYREVLRKELASLKNSKCHWRQQQQIHGHDDKGTTRDLANGASKTFLY
DIGRSRTTPFDPKRRRDRYYQRSAPATNGSKPRFSPYRLSSEEIGAGLWQ
VKSMPPRAAPGSCHKAFMDKSHLKTAI*
back to top

mRNA from alignment at chr13:667997..668680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02410.1 ID=NO13G02410.1|Name=NO13G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=684bp|location=Sequence derived from alignment at chr13:667997..668680- (Nannochloropsis oceanica)
ATGTACTCCATTAAGCGCCGCCATCCCAAACTCGTAGATATGCCAGATGG
GGAACCGCAACCCTTCTTATCAGTGGGGGAGCCGTATCAGGACAAGAGCG
ATCTACCGGAACGGTGGAAGGGCAAGCGTATGGTCTGTGGCGGGACGCCC
CAAGAAACGTTTAGCAGGCTCAAGTATCCCGAGGGTGAACCCTATGTGGC
CGTGCCATTGTATATCGAGGCAGAGTCCATCGACACCCGGAAGGCGGGAT
TCGGGAGCAAAGATGCGTCAAAAAGAGACGAGTTTACAAACTTTATTCGC
ACCGAGCAGTATCGTGAGGTGCTCCGCAAGGAGCTGGCATCCCTCAAAAA
TTCGAAATGCCACTGGCGGCAGCAACAGCAGATCCACGGCCACGATGACA
AGGGCACCACCCGGGACTTGGCAAATGGTGCTAGTAAGACCTTCTTGTAC
GACATTGGCCGCAGTCGTACGACCCCCTTTGACCCGAAGCGTCGCCGCGA
TCGCTACTACCAGCGGTCTGCACCTGCGACCAACGGCAGCAAGCCTCGCT
TTAGTCCATACCGTCTTTCATCCGAAGAGATTGGGGCCGGACTGTGGCAA
GTCAAGTCGATGCCGCCACGCGCTGCGCCTGGCTCGTGTCATAAGGCATT
TATGGACAAAAGTCATCTCAAGACTGCGATTTAG
back to top

Coding sequence (CDS) from alignment at chr13:667997..668680-

>NO13G02410.1 ID=NO13G02410.1|Name=NO13G02410.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr13:667997..668680- (Nannochloropsis oceanica)
ATGTACTCCATTAAGCGCCGCCATCCCAAACTCGTAGATATGCCAGATGG
GGAACCGCAACCCTTCTTATCAGTGGGGGAGCCGTATCAGGACAAGAGCG
ATCTACCGGAACGGTGGAAGGGCAAGCGTATGGTCTGTGGCGGGACGCCC
CAAGAAACGTTTAGCAGGCTCAAGTATCCCGAGGGTGAACCCTATGTGGC
CGTGCCATTGTATATCGAGGCAGAGTCCATCGACACCCGGAAGGCGGGAT
TCGGGAGCAAAGATGCGTCAAAAAGAGACGAGTTTACAAACTTTATTCGC
ACCGAGCAGTATCGTGAGGTGCTCCGCAAGGAGCTGGCATCCCTCAAAAA
TTCGAAATGCCACTGGCGGCAGCAACAGCAGATCCACGGCCACGATGACA
AGGGCACCACCCGGGACTTGGCAAATGGTGCTAGTAAGACCTTCTTGTAC
GACATTGGCCGCAGTCGTACGACCCCCTTTGACCCGAAGCGTCGCCGCGA
TCGCTACTACCAGCGGTCTGCACCTGCGACCAACGGCAGCAAGCCTCGCT
TTAGTCCATACCGTCTTTCATCCGAAGAGATTGGGGCCGGACTGTGGCAA
GTCAAGTCGATGCCGCCACGCGCTGCGCCTGGCTCGTGTCATAAGGCATT
TATGGACAAAAGTCATCTCAAGACTGCGATTTAG
back to top
Synonyms
Publications