NO13G02040, NO13G02040 (gene) Nannochloropsis oceanica

Overview
NameNO13G02040
Unique NameNO13G02040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length459
Alignment locationchr13:582081..582539 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:582081..582539 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G02040 vs. NCBI_GenBank
Match: EWM21867.1 (hypothetical protein Naga_100169g7 [Nannochloropsis gaditana])

HSP 1 Score: 171.0 bits (432), Expect = 2.800e-39
Identity = 95/155 (61.29%), Postives = 119/155 (76.77%), Query Frame = 0 
Query:    1 MSTRPRSVRGIHADVFLSNATTAPSSSPTSLCASPPSPSTKLSA--PDGPQD--VAARVHRMEGTILNLEKQLKRLESVIATKSSGRNRAKMLVINYDVGPDAKVDSVDIAVGAAWVFGFLGLMIGRSIASNLWFVGFLTGAMWAGFLAREEEGG 152
            +  RP S  G+ AD+FL N TTA SSS ++L    P P    ++  P+  ++  + AR+ RMEGT+ +LE+++KRLES IA K  GR+RAKM+VINYDVGPDA++DSVDIAVGAA  FG LGL+IGRS+ASNLWFVGFLTGA+ AGFLAREEEGG
Sbjct:   83 LGLRPHSTGGVRADIFLRN-TTAVSSSVSTLERPQPEPPLHATSTIPENVEEKNMLARMRRMEGTMQSLEREVKRLESAIAVKGRGRSRAKMIVINYDVGPDAQIDSVDIAVGAAGAFGLLGLLIGRSLASNLWFVGFLTGALGAGFLAREEEGG 236
The following BLAST results are available for this feature:
BLAST of NO13G02040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21867.12.800e-3961.29hypothetical protein Naga_100169g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001692NSK001692Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02040.1NO13G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|113568gene_6806Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100169g7gene8567Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02040.1NO13G02040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02040 ID=NO13G02040|Name=NO13G02040|organism=Nannochloropsis oceanica|type=gene|length=459bp
ATGAGTACGAGACCACGCAGCGTCCGAGGCATCCACGCCGATGTCTTTTT
AAGCAACGCGACCACTGCGCCCTCGTCCTCTCCCACCTCTCTCTGTGCCT
CCCCCCCGTCGCCATCAACAAAATTGTCCGCACCCGACGGTCCCCAAGAC
GTCGCCGCCCGGGTCCATCGTATGGAAGGAACCATTCTAAATCTGGAAAA
GCAACTCAAGCGCTTAGAAAGCGTGATTGCTACCAAAAGCAGCGGCAGAA
ATCGAGCCAAAATGCTCGTTATAAACTATGACGTTGGCCCCGACGCGAAG
GTGGATTCTGTCGACATCGCCGTGGGCGCTGCATGGGTATTCGGTTTCCT
GGGATTAATGATCGGTCGCTCTATAGCGAGTAACTTGTGGTTCGTGGGAT
TTCTGACAGGGGCGATGTGGGCGGGGTTCCTGGCTAGGGAGGAAGAGGGG
GGGCGATAA
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protein sequence of NO13G02040.1

>NO13G02040.1-protein ID=NO13G02040.1-protein|Name=NO13G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MSTRPRSVRGIHADVFLSNATTAPSSSPTSLCASPPSPSTKLSAPDGPQD
VAARVHRMEGTILNLEKQLKRLESVIATKSSGRNRAKMLVINYDVGPDAK
VDSVDIAVGAAWVFGFLGLMIGRSIASNLWFVGFLTGAMWAGFLAREEEG
GR*
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Synonyms
Publications