NO13G01880, NO13G01880 (gene) Nannochloropsis oceanica

Overview
NameNO13G01880
Unique NameNO13G01880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1632
Alignment locationchr13:547477..549108 -

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Properties
Property NameValue
DescriptionArabinose 5-phosphate isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:547477..549108 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029056Ribokinase-like
IPR011611PfkB_dom
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
Homology
BLAST of NO13G01880 vs. NCBI_GenBank
Match: XP_009833182.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV77395.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 110.2 bits (274), Expect = 1.500e-20
Identity = 80/252 (31.75%), Postives = 128/252 (50.79%), Query Frame = 0
Query:  114 VLGCGSNVVDKFYPLRRWPKEGQKGFFLEENVCSARVVGGVTLNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRVNENYTTSISHCFSSPGGERTILMAPASTAKLEATTMELEFGSIVRHRASMVTTEISQVPLSGVLFLLQTARQAGMPAMLDVDVSPEVALGPAQLGSQAELVQCVTAASVVKLTADAARELLALVNPSLKQEEQERSLDGLAQQLADALRTKLCVVTDGSKGLALA 366
            +L CGS++VD    ++  P      +   +N+    V GG  +NHL W +ALG  +GLLA QG D  G  +R+ L +  V+T  +   E++ T++S  F +  G+   +++  S  +L    M+L F   ++H A  V+TEI  VPL+ V   L  A  +     LD+   P VA+  A LG    L +C+  A+VV+ +  AARE   LV+ S  + +Q+     +A +L D        +T+   G+ LA
Sbjct:   25 LLSCGSSLVDIVSHVKHLPTAHHTTYLHRKNLAHEVVAGG-AMNHLAWCQALGLNSGLLAFQGADKYGDMIREKLHEHQVNTDFLVQKEDFETTVSRTFVAASGDSCSILSGGSMLELPQHAMKLFFAEPLQH-AKCVSTEIRHVPLASVEETLDLASHS--VRFLDLATPPSVAVHDAGLGDWETLERCLAKATVVRASVAAARE---LVDDSASRTDQD-----IAHRLRDKFGIPFVALTNDVNGVVLA 264          
BLAST of NO13G01880 vs. NCBI_GenBank
Match: XP_008874878.1 (hypothetical protein H310_10312 [Aphanomyces invadans] >ETV96615.1 hypothetical protein H310_10312 [Aphanomyces invadans])

HSP 1 Score: 106.7 bits (265), Expect = 1.700e-19
Identity = 74/252 (29.37%), Postives = 127/252 (50.40%), Query Frame = 0
Query:  114 VLGCGSNVVDKFYPLRRWPKEGQKGFFLEENVCSARVVGGVTLNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRVNENYTTSISHCFSSPGGERTILMAPASTAKLEATTMELEFGSIVRHRASMVTTEISQVPLSGVLFLLQTARQAGMPAMLDVDVSPEVALGPAQLGSQAELVQCVTAASVVKLTADAARELLALVNPSLKQEEQERSLDGLAQQLADALRTKLCVVTDGSKGLALA 366
            +L CGS +VD    ++  P      +   +NV    V GG  +NHL W +ALG  +GLLA QG D  G  +R+ L +  V+T  +  NE++ T++   F +  G+   +++  S  +L    +++ F   ++H A  V+TEI  +PL+ V   L  A  +     LD+ + P +A+  A LG    L +C+  ++VVK + DAAREL           +   S + +A++L +        +TD ++ + +A
Sbjct:   25 LLSCGSALVDVVSHVKHLPGAHHTTYLHRKNVAKEVVAGG-AMNHLAWCQALGLNSGLLAFQGADKYGDMIREKLHEHQVNTDYLVQNEDFETTVLRTFVAASGDSCSILSGGSMLELPQHAVKMFFAEPLQH-AKCVSTEIRHLPLNSVEEALDLAVHS--IRFLDLALLPSIAVHDAGLGDWKTLERCIAKSTVVKASVDAAREL---------TNDPAASPEDIARRLHEKYNVPFVALTDNAREVVMA 263          
BLAST of NO13G01880 vs. NCBI_GenBank
Match: OQS06795.1 (fructokinase [Thraustotheca clavata])

HSP 1 Score: 106.3 bits (264), Expect = 2.200e-19
Identity = 68/252 (26.98%), Postives = 127/252 (50.40%), Query Frame = 0
Query:  114 VLGCGSNVVDKFYPLRRWPKEGQKGFFLEENVCSARVVGGVTLNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRVNENYTTSISHCFSSPGGERTILMAPASTAKLEATTMELEFGSIVRHRASMVTTEISQVPLSGVLFLLQTARQAGMPAMLDVDVSPEVALGPAQLGSQAELVQCVTAASVVKLTADAARELLALVNPSLKQEEQERSLDGLAQQLADALRTKLCVVTDGSKGLALA 366
            ++ CGS++V+    +++ P      F  ++   +  V GG  L+H  W + LG  + LL+LQG D  G  +R+T+    + T  +   + + +S+   F    GE+  +M+  S   L    M+L F   ++ +A  ++ +I+QVPL+ +  +L  A  AG    LD+ + P VA+  A+LG    L +C++ ++VVK +  AA+EL           +    +D +A ++ +  +     +TDG+ G  +A
Sbjct:   22 LISCGSSLVNVISHVKKLPLPNSMVFNHKKTTQNEIVTGG-ALHHSAWVQVLGVNSSLLSLQGADKYGDMIRETMRKHNISTDFMVQKDEFESSVCRTFVDSMGEKCSIMSAGSMMDLPNNAMKLFFSEPIQ-KAKSISLDINQVPLASIEEMLDVALGAGSLRFLDITLLPSVAVHEAELGDWDTLERCISKSTVVKASLAAAKEL---------TNDPSAPIDEIAIRMREKFQIPYVAITDGANGAVIA 262          
BLAST of NO13G01880 vs. NCBI_GenBank
Match: XP_008874879.1 (hypothetical protein, variant [Aphanomyces invadans] >ETV96616.1 hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 90.1 bits (222), Expect = 1.600e-14
Identity = 62/210 (29.52%), Postives = 109/210 (51.90%), Query Frame = 0
Query:  156 LNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRVNENYTTSISHCFSSPGGERTILMAPASTAKLEATTMELEFGSIVRHRASMVTTEISQVPLSGVLFLLQTARQAGMPAMLDVDVSPEVALGPAQLGSQAELVQCVTAASVVKLTADAARELLALVNPSLKQEEQERSLDGLAQQLADALRTKLCVVTDGSKGLALA 366
            +NHL W +ALG  +GLLA QG D  G  +R+ L +  V+T  +  NE++ T++   F +  G+   +++  S  +L    +++ F   ++H A  V+TEI  +PL+ V   L  A  +     LD+ + P +A+  A LG    L +C+  ++VVK + DAAREL           +   S + +A++L +        +TD ++ + +A
Sbjct:    1 MNHLAWCQALGLNSGLLAFQGADKYGDMIREKLHEHQVNTDYLVQNEDFETTVLRTFVAASGDSCSILSGGSMLELPQHAVKMFFAEPLQH-AKCVSTEIRHLPLNSVEEALDLAVHS--IRFLDLALLPSIAVHDAGLGDWKTLERCIAKSTVVKASVDAAREL---------TNDPAASPEDIARRLHEKYNVPFVALTDNAREVVMA 198          
BLAST of NO13G01880 vs. NCBI_GenBank
Match: WP_040924413.1 (ribokinase, partial [Saccharomonospora paurometabolica])

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-8
Identity = 60/186 (32.26%), Postives = 85/186 (45.70%), Query Frame = 0
Query:  114 VLGCGSNVVDKFYPLRRWPKEGQKGFFLEENVCSARVV---GGVTLNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRVNENYTTSISHCFSSPGGERTILMAPASTAKLEATTMELEFGSIVRHRASMVTTEISQVPLSGVLFLLQTARQAGMPAMLDVDVSPEVALGPAQLGS 297
            VL  GS  VD   P RR P  G       E V     V   GG   N  V A  LG    LL   G D++G  +R +LE  GVD SA+R   +  T +++   +P GE +IL++P +   L    ++           SM      ++PL  V   L+ A +AG+P +L  ++S    LG A LG+
Sbjct:    5 VLVVGSANVDLVVPARRRPGAG-------ETVLGGDTVIHPGGKGANAAVAAARLGADVALLGAVGADEHGRQLRTSLERSGVDLSAVRRVHDRPTGVAYITVTPDGENSILVSPGANEALRPADVDEALPGAQLMVVSM------EIPLETVEHALRAAARAGVPTVL--NLSSVAELGGAALGA 175          
BLAST of NO13G01880 vs. NCBI_GenBank
Match: WP_019810958.1 (ribokinase, partial [Saccharomonospora halophila])

HSP 1 Score: 67.8 bits (164), Expect = 8.500e-8
Identity = 58/186 (31.18%), Postives = 84/186 (45.16%), Query Frame = 0
Query:  114 VLGCGSNVVDKFYPLRRWPKEGQKGFFLEENVCSARVV---GGVTLNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRVNENYTTSISHCFSSPGGERTILMAPASTAKLEATTMELEFGSIVRHRASMVTTEISQVPLSGVLFLLQTARQAGMPAMLDVDVSPEVALGPAQLGS 297
            VL  GS  +D   P RR P  G       E V     V   GG   N  V A  LG    LL   G D++G  VR +LE  GVD SA+R   +  T +++   +P GE +IL++P +   L    ++           SM      ++PL  V   L+ A +AG+  +L  ++SP   +  A LG+
Sbjct:    5 VLVVGSANIDLVVPARRRPGAG-------ETVLGGDTVIHPGGKGANTAVAAARLGADVALLGAIGADEHGRRVRTSLERSGVDVSAVRHVRDRPTGVAYITVTPDGENSILVSPGANEALRPADVDEALPGAQLMVVSM------EIPLETVEHALRAAARAGVGTVL--NLSPVTGVSGAALGA 175          
BLAST of NO13G01880 vs. NCBI_GenBank
Match: WP_055835764.1 (ribokinase [Leifsonia sp. Root4] >KQW08390.1 hypothetical protein ASC66_05715 [Leifsonia sp. Root4])

HSP 1 Score: 65.5 bits (158), Expect = 4.200e-7
Identity = 75/256 (29.30%), Postives = 115/256 (44.92%), Query Frame = 0
Query:  110 TSKLVLGCGSNVVDKFYPLRRWPKEGQKGFFLEENVCSARVVGGVTLNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRVNENYTTSISHCFSSPGGERTILMAPASTAKLEATTMELEFGSIVRHRASMVTTEISQVPLSGVLFLLQTARQAGMPAMLDVDVSPEVALGPAQLGSQAELVQCVTAASVVKLTADAARELLALVNPSLKQEEQERSLDGLAQQLADALRTKLCVVTDGSKGLALA 366
            T +LV+  GS  VD    +  +P  G+      E+   A  +GG   N  V A   G  T L+A  GTD +G     TL+ +GVDTS I+   + TT ++    +  GE T+++   +   L     + +  +I    AS+V T+  ++P + V  L  +A  AG   +L  +++P VA+ PA L     LV     A  V L  DAA       + +L  E  ++    LA     A   +  V+T GS G   A
Sbjct:    6 TPRLVV-VGSLNVDSTSYVGHFPAPGE----TVESTGFAVALGGKGTNQAVAAHLAGVGTELIARVGTDSSGDFALSTLDQLGVDTSGIQRIADVTTGVAQITVAASGENTVIVTAGANGLLGPELSDADAAAIA--AASLVLTQ-GEIPAATVEALAASASAAGTRYVL--NLAPPVAVAPAALAVCDPLVVNEHEARAVGLVPDAA------ADDTLSIERWQQ----LAASAVAAGHCRSLVITLGSAGAVAA 241          
BLAST of NO13G01880 vs. NCBI_GenBank
Match: WP_105302362.1 (carbohydrate kinase family protein [Anaerotruncus sp. Marseille-P4302])

HSP 1 Score: 64.3 bits (155), Expect = 9.400e-7
Identity = 39/111 (35.14%), Postives = 55/111 (49.55%), Query Frame = 0
Query:  110 TSKLVLGCGSNVVDKFYPLRRWPKEGQKGFFLEENVCSARVVGGVTLNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRVNENYTTSISHCFSSPGGERT 221
            +S  + G GS  +D+ + L  WPKE      L     +    GG     +V AR LG    ++A  GTD+ G  +R+ LE  GVDTS +++ E  T+  S    SP G RT
Sbjct:   40 SSMKITGIGSACLDRIHQLEAWPKEDGSTHILS----TITQGGGAAATAIVTARRLGQKAAMIAAIGTDEAGAEIRRGLEQEGVDTSCLQIYEG-TSPHSEIMVSPDGSRT 145          
The following BLAST results are available for this feature:
BLAST of NO13G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 18
Match NameE-valueIdentityDescription
XP_009833182.11.500e-2031.75hypothetical protein, variant [Aphanomyces astaci]... [more]
XP_008874878.11.700e-1929.37hypothetical protein H310_10312 [Aphanomyces invad... [more]
OQS06795.12.200e-1926.98fructokinase [Thraustotheca clavata][more]
XP_008874879.11.600e-1429.52hypothetical protein, variant [Aphanomyces invadan... [more]
WP_040924413.11.300e-832.26ribokinase, partial [Saccharomonospora paurometabo... [more]
WP_019810958.18.500e-831.18ribokinase, partial [Saccharomonospora halophila][more]
WP_055835764.14.200e-729.30ribokinase [Leifsonia sp. Root4] >KQW08390.1 hypot... [more]
WP_105302362.19.400e-735.14carbohydrate kinase family protein [Anaerotruncus ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01880.1NO13G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01880.1NO13G01880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01880 ID=NO13G01880|Name=NO13G01880|organism=Nannochloropsis oceanica|type=gene|length=1632bp
ATGCTTGGAGCCTCCTCCTGTCGGGTAGGAATGACCATGGTACGGATGCG
GCCTTCCTTCCCCCCGGTCACCACCTCCTGGGTCTCCTCTTCCGGAGCAT
CAACCACCGCTGCTTCCTGCGCCGCCTCCACCACTCAACACCGACGCGTT
CAAGCAATGGCCTCTGTCTCTATGTCTTCTCCTTCTTCCATCGCATCCAC
CATCGCTGCCCTTTCCCCAAACAACCCCAGACTAGCAAGCCACGCTTCTC
AACTCCGTCTGCGCCTTACACAACCCCAGACCGGCAAGTCACCCTCTTTC
TCATCTTCATCTACAGCAGCCAGGAAGACGAGCAAATTAGTCCTTGGCTG
CGGAAGgtgcgtctattgattgatgtgtgccgcctttttctatccgatct
ttttatatatctacctcatgaatattttttatgtagataatgttttgtgc
cgtacttagagagcacccggtagtacttctgcctttcatcgatcgagcag
gactgtctgcaagagtcattttggcgcccacagaattaaccgatgccaat
cgcaattaatgctttatcaatgaagtcaaacaaataaaaatgataaaaat
aaaataaaatattaaggacttaatccccttcctcactcccatcagCAACG
TCGTCGATAAATTTTACCCTTTACGAAGATGGCCCAAGGAAGGCCAGAAG
GGTTTCTTTCTGGAAGAGAATGTCTGCAGCGCCCGGGTGGTGGGGGGCGT
CACGCTCAATCACTTGGTCTGGGCCCGGGCACTCGGGACTCCGACGGGCT
TGCTGGCGTTGCAAGGGACCGATGATAACGGGGTCGCGGTACGGCAGACG
CTTGAAGATATGGGCGTGGACACCAGTGCAATCCGTGTCAATGAGAATTA
CACAACCAGTATCAGCCACTGCTTTTCTTCGCCTGGGGGGGAAAGGACGA
TTCTGATGGCGCCGGgtaagtggaagggcgaggaaggagaaaggaggaag
aaggcaaaatggaaaggagggaaattggattgggtccgacacccatattg
aatttgatcgtatgccttcgcttcttcctacagagtgtaggaagaagcga
gaaactcactctaccttttcctcccctccctcctgttcctccctcgctag
CTTCTACCGCTAAGCTGGAGGCAACCACAATGGAACTCGAGTTTGGCTCG
ATCGTCCGCCACCGCGCTAGCATGGTCACGACGGAAATCTCACAAGTCCC
CCTCTCGGGTGTCTTGTTCCTTCTTCAAACGGCGCGCCAAGCCGGAATGC
CCGCCATGCTCGACGTGGACGTCTCACCAGAAGTCGCTCTAGGCCCCGCG
CAGTTAGGGTCTCAAGCAGAATTGGTGCAGTGCGTCACCGCGGCCTCGGT
TGTCAAGCTCACAGCAGACGCCGCGAGAGAGTTGCTGGCGTTGGTGAACC
CTTCATTGAAGCAGGAAGAGCAAGAGAGGAGCTTGGATGGGCTTGCACAG
CAGTTGGCGGACGCATTGAGGACAAAGTTGTGTGTGGTGACGGATGGGAG
CAAGGGTTTGGCATTAGCGTTGGGAAGGAGGTCGATGAGGGAAAGAGGAG
GAGAAAAAAAGGGGGGGGGGGAGGAAGTGTGA
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protein sequence of NO13G01880.1

>NO13G01880.1-protein ID=NO13G01880.1-protein|Name=NO13G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MLGASSCRVGMTMVRMRPSFPPVTTSWVSSSGASTTAASCAASTTQHRRV
QAMASVSMSSPSSIASTIAALSPNNPRLASHASQLRLRLTQPQTGKSPSF
SSSSTAARKTSKLVLGCGSNVVDKFYPLRRWPKEGQKGFFLEENVCSARV
VGGVTLNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRV
NENYTTSISHCFSSPGGERTILMAPASTAKLEATTMELEFGSIVRHRASM
VTTEISQVPLSGVLFLLQTARQAGMPAMLDVDVSPEVALGPAQLGSQAEL
VQCVTAASVVKLTADAARELLALVNPSLKQEEQERSLDGLAQQLADALRT
KLCVVTDGSKGLALALGRRSMRERGGEKKGGGEEV*
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Synonyms
Publications