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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:547477..549108 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01880.1 vs.
Match: EWM21835.1 (arabinose 5-phosphate isomerase [Nannochloropsis gaditana]) HSP 1 Score: 413.7 bits (1062), Expect = 6.300e-112 Identity = 210/274 (76.64%), Postives = 245/274 (89.42%), Query Frame = 0
Query: 110 TSKLVLGCGSNVVDKFYPLRRWPKEGQKGFFLEENVCSARVVGGVTLNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRVNENYTTSISHCFSSPGGERTILMAPASTAKLEATTMELEFGSIVRHRASMVTTEISQVPLSGVLFLLQTARQAGMPAMLDVDVSPEVALGPAQLGSQAELVQCVTAASVVKLTADAARELLALVNPSLKQEEQERSLDGLAQQLADALRTKLCVVTDGSKGLALALGRRSMRER----GGEKK 380
TSKLVLGCGSNVVDKFYP+RRWPKEG KG+FL+E++CSARVVGGVTLNHLVWARALGTPTGLLALQGTD+NGVA+RQTL+D+GVDTSAIRV+E ++TS+SH F SPG ERTILMAPASTA L+A TMELEFGS++R RASM+TTEISQVPLSGVLFLL AR AG P++LDVD+SPEVALGPAQLGS AEL++CVT+AS+VKLTA+AA E+L LVNP L + ERSL+GLAQQLA+AL +LCVVTDGS+GLALALGRR +++ GG +K
Sbjct: 16 TSKLVLGCGSNVVDKFYPIRRWPKEGTKGYFLDESICSARVVGGVTLNHLVWARALGTPTGLLALQGTDENGVAIRQTLDDVGVDTSAIRVSEKFSTSLSHIFPSPGAERTILMAPASTANLDAKTMELEFGSVIRRRASMITTEISQVPLSGVLFLLHAARDAGFPSLLDVDISPEVALGPAQLGSSAELIECVTSASMVKLTAEAAEEVLGLVNPKL-NGQTERSLEGLAQQLAEALHARLCVVTDGSRGLALALGRRKAQDQTSGSGGRRK 288
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01880.1 ID=NO13G01880.1|Name=NO13G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp ATGCTTGGAGCCTCCTCCTGTCGGGTAGGAATGACCATGGTACGGATGCG GCCTTCCTTCCCCCCGGTCACCACCTCCTGGGTCTCCTCTTCCGGAGCAT CAACCACCGCTGCTTCCTGCGCCGCCTCCACCACTCAACACCGACGCGTT CAAGCAATGGCCTCTGTCTCTATGTCTTCTCCTTCTTCCATCGCATCCAC CATCGCTGCCCTTTCCCCAAACAACCCCAGACTAGCAAGCCACGCTTCTC AACTCCGTCTGCGCCTTACACAACCCCAGACCGGCAAGTCACCCTCTTTC TCATCTTCATCTACAGCAGCCAGGAAGACGAGCAAATTAGTCCTTGGCTG CGGAAGCAACGTCGTCGATAAATTTTACCCTTTACGAAGATGGCCCAAGG AAGGCCAGAAGGGTTTCTTTCTGGAAGAGAATGTCTGCAGCGCCCGGGTG GTGGGGGGCGTCACGCTCAATCACTTGGTCTGGGCCCGGGCACTCGGGAC TCCGACGGGCTTGCTGGCGTTGCAAGGGACCGATGATAACGGGGTCGCGG TACGGCAGACGCTTGAAGATATGGGCGTGGACACCAGTGCAATCCGTGTC AATGAGAATTACACAACCAGTATCAGCCACTGCTTTTCTTCGCCTGGGGG GGAAAGGACGATTCTGATGGCGCCGGCTTCTACCGCTAAGCTGGAGGCAA CCACAATGGAACTCGAGTTTGGCTCGATCGTCCGCCACCGCGCTAGCATG GTCACGACGGAAATCTCACAAGTCCCCCTCTCGGGTGTCTTGTTCCTTCT TCAAACGGCGCGCCAAGCCGGAATGCCCGCCATGCTCGACGTGGACGTCT CACCAGAAGTCGCTCTAGGCCCCGCGCAGTTAGGGTCTCAAGCAGAATTG GTGCAGTGCGTCACCGCGGCCTCGGTTGTCAAGCTCACAGCAGACGCCGC GAGAGAGTTGCTGGCGTTGGTGAACCCTTCATTGAAGCAGGAAGAGCAAG AGAGGAGCTTGGATGGGCTTGCACAGCAGTTGGCGGACGCATTGAGGACA AAGTTGTGTGTGGTGACGGATGGGAGCAAGGGTTTGGCATTAGCGTTGGG AAGGAGGTCGATGAGGGAAAGAGGAGGAGAAAAAAAGGGGGGGGGGGAGG AAGTGTGA back to topprotein sequence of NO13G01880.1 >NO13G01880.1-protein ID=NO13G01880.1-protein|Name=NO13G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp MLGASSCRVGMTMVRMRPSFPPVTTSWVSSSGASTTAASCAASTTQHRRV QAMASVSMSSPSSIASTIAALSPNNPRLASHASQLRLRLTQPQTGKSPSF SSSSTAARKTSKLVLGCGSNVVDKFYPLRRWPKEGQKGFFLEENVCSARV VGGVTLNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRV NENYTTSISHCFSSPGGERTILMAPASTAKLEATTMELEFGSIVRHRASM VTTEISQVPLSGVLFLLQTARQAGMPAMLDVDVSPEVALGPAQLGSQAEL VQCVTAASVVKLTADAARELLALVNPSLKQEEQERSLDGLAQQLADALRT KLCVVTDGSKGLALALGRRSMRERGGEKKGGGEEV* back to topmRNA from alignment at chr13:547477..549108- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01880.1 ID=NO13G01880.1|Name=NO13G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp|location=Sequence derived from alignment at chr13:547477..549108- (Nannochloropsis oceanica) ATGCTTGGAGCCTCCTCCTGTCGGGTAGGAATGACCATGGTACGGATGCG
GCCTTCCTTCCCCCCGGTCACCACCTCCTGGGTCTCCTCTTCCGGAGCAT
CAACCACCGCTGCTTCCTGCGCCGCCTCCACCACTCAACACCGACGCGTT
CAAGCAATGGCCTCTGTCTCTATGTCTTCTCCTTCTTCCATCGCATCCAC
CATCGCTGCCCTTTCCCCAAACAACCCCAGACTAGCAAGCCACGCTTCTC
AACTCCGTCTGCGCCTTACACAACCCCAGACCGGCAAGTCACCCTCTTTC
TCATCTTCATCTACAGCAGCCAGGAAGACGAGCAAATTAGTCCTTGGCTG
CGGAAGGTGCGTCTATTGATTGATGTGTGCCGCCTTTTTCTATCCGATCT
TTTTATATATCTACCTCATGAATATTTTTTATGTAGATAATGTTTTGTGC
CGTACTTAGAGAGCACCCGGTAGTACTTCTGCCTTTCATCGATCGAGCAG
GACTGTCTGCAAGAGTCATTTTGGCGCCCACAGAATTAACCGATGCCAAT
CGCAATTAATGCTTTATCAATGAAGTCAAACAAATAAAAATGATAAAAAT
AAAATAAAATATTAAGGACTTAATCCCCTTCCTCACTCCCATCAGCAACG
TCGTCGATAAATTTTACCCTTTACGAAGATGGCCCAAGGAAGGCCAGAAG
GGTTTCTTTCTGGAAGAGAATGTCTGCAGCGCCCGGGTGGTGGGGGGCGT
CACGCTCAATCACTTGGTCTGGGCCCGGGCACTCGGGACTCCGACGGGCT
TGCTGGCGTTGCAAGGGACCGATGATAACGGGGTCGCGGTACGGCAGACG
CTTGAAGATATGGGCGTGGACACCAGTGCAATCCGTGTCAATGAGAATTA
CACAACCAGTATCAGCCACTGCTTTTCTTCGCCTGGGGGGGAAAGGACGA
TTCTGATGGCGCCGGGTAAGTGGAAGGGCGAGGAAGGAGAAAGGAGGAAG
AAGGCAAAATGGAAAGGAGGGAAATTGGATTGGGTCCGACACCCATATTG
AATTTGATCGTATGCCTTCGCTTCTTCCTACAGAGTGTAGGAAGAAGCGA
GAAACTCACTCTACCTTTTCCTCCCCTCCCTCCTGTTCCTCCCTCGCTAG
CTTCTACCGCTAAGCTGGAGGCAACCACAATGGAACTCGAGTTTGGCTCG
ATCGTCCGCCACCGCGCTAGCATGGTCACGACGGAAATCTCACAAGTCCC
CCTCTCGGGTGTCTTGTTCCTTCTTCAAACGGCGCGCCAAGCCGGAATGC
CCGCCATGCTCGACGTGGACGTCTCACCAGAAGTCGCTCTAGGCCCCGCG
CAGTTAGGGTCTCAAGCAGAATTGGTGCAGTGCGTCACCGCGGCCTCGGT
TGTCAAGCTCACAGCAGACGCCGCGAGAGAGTTGCTGGCGTTGGTGAACC
CTTCATTGAAGCAGGAAGAGCAAGAGAGGAGCTTGGATGGGCTTGCACAG
CAGTTGGCGGACGCATTGAGGACAAAGTTGTGTGTGGTGACGGATGGGAG
CAAGGGTTTGGCATTAGCGTTGGGAAGGAGGTCGATGAGGGAAAGAGGAG
GAGAAAAAAAGGGGGGGGGGGAGGAAGTGTGA back to topCoding sequence (CDS) from alignment at chr13:547477..549108- >NO13G01880.1 ID=NO13G01880.1|Name=NO13G01880.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr13:547477..549108- (Nannochloropsis oceanica) ATGCTTGGAGCCTCCTCCTGTCGGGTAGGAATGACCATGGTACGGATGCG GCCTTCCTTCCCCCCGGTCACCACCTCCTGGGTCTCCTCTTCCGGAGCAT CAACCACCGCTGCTTCCTGCGCCGCCTCCACCACTCAACACCGACGCGTT CAAGCAATGGCCTCTGTCTCTATGTCTTCTCCTTCTTCCATCGCATCCAC CATCGCTGCCCTTTCCCCAAACAACCCCAGACTAGCAAGCCACGCTTCTC AACTCCGTCTGCGCCTTACACAACCCCAGACCGGCAAGTCACCCTCTTTC TCATCTTCATCTACAGCAGCCAGGAAGACGAGCAAATTAGTCCTTGGCTG CGGAAGCAACGTCGTCGATAAATTTTACCCTTTACGAAGATGGCCCAAGG AAGGCCAGAAGGGTTTCTTTCTGGAAGAGAATGTCTGCAGCGCCCGGGTG GTGGGGGGCGTCACGCTCAATCACTTGGTCTGGGCCCGGGCACTCGGGAC TCCGACGGGCTTGCTGGCGTTGCAAGGGACCGATGATAACGGGGTCGCGG TACGGCAGACGCTTGAAGATATGGGCGTGGACACCAGTGCAATCCGTGTC AATGAGAATTACACAACCAGTATCAGCCACTGCTTTTCTTCGCCTGGGGG GGAAAGGACGATTCTGATGGCGCCGGCTTCTACCGCTAAGCTGGAGGCAA CCACAATGGAACTCGAGTTTGGCTCGATCGTCCGCCACCGCGCTAGCATG GTCACGACGGAAATCTCACAAGTCCCCCTCTCGGGTGTCTTGTTCCTTCT TCAAACGGCGCGCCAAGCCGGAATGCCCGCCATGCTCGACGTGGACGTCT CACCAGAAGTCGCTCTAGGCCCCGCGCAGTTAGGGTCTCAAGCAGAATTG GTGCAGTGCGTCACCGCGGCCTCGGTTGTCAAGCTCACAGCAGACGCCGC GAGAGAGTTGCTGGCGTTGGTGAACCCTTCATTGAAGCAGGAAGAGCAAG AGAGGAGCTTGGATGGGCTTGCACAGCAGTTGGCGGACGCATTGAGGACA AAGTTGTGTGTGGTGACGGATGGGAGCAAGGGTTTGGCATTAGCGTTGGG AAGGAGGTCGATGAGGGAAAGAGGAGGAGAAAAAAAGGGGGGGGGGGAGG AAGTGTGA back to top
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