NO13G01880.1, NO13G01880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01880.1
Unique NameNO13G01880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1158
Alignment locationchr13:547477..549108 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:547477..549108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G01880.1 vs.
Match: EWM21835.1 (arabinose 5-phosphate isomerase [Nannochloropsis gaditana])

HSP 1 Score: 413.7 bits (1062), Expect = 6.300e-112
Identity = 210/274 (76.64%), Postives = 245/274 (89.42%), Query Frame = 0
Query:  110 TSKLVLGCGSNVVDKFYPLRRWPKEGQKGFFLEENVCSARVVGGVTLNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRVNENYTTSISHCFSSPGGERTILMAPASTAKLEATTMELEFGSIVRHRASMVTTEISQVPLSGVLFLLQTARQAGMPAMLDVDVSPEVALGPAQLGSQAELVQCVTAASVVKLTADAARELLALVNPSLKQEEQERSLDGLAQQLADALRTKLCVVTDGSKGLALALGRRSMRER----GGEKK 380
            TSKLVLGCGSNVVDKFYP+RRWPKEG KG+FL+E++CSARVVGGVTLNHLVWARALGTPTGLLALQGTD+NGVA+RQTL+D+GVDTSAIRV+E ++TS+SH F SPG ERTILMAPASTA L+A TMELEFGS++R RASM+TTEISQVPLSGVLFLL  AR AG P++LDVD+SPEVALGPAQLGS AEL++CVT+AS+VKLTA+AA E+L LVNP L   + ERSL+GLAQQLA+AL  +LCVVTDGS+GLALALGRR  +++    GG +K
Sbjct:   16 TSKLVLGCGSNVVDKFYPIRRWPKEGTKGYFLDESICSARVVGGVTLNHLVWARALGTPTGLLALQGTDENGVAIRQTLDDVGVDTSAIRVSEKFSTSLSHIFPSPGAERTILMAPASTANLDAKTMELEFGSVIRRRASMITTEISQVPLSGVLFLLHAARDAGFPSLLDVDISPEVALGPAQLGSSAELIECVTSASMVKLTAEAAEEVLGLVNPKL-NGQTERSLEGLAQQLAEALHARLCVVTDGSRGLALALGRRKAQDQTSGSGGRRK 288          
The following BLAST results are available for this feature:
BLAST of NO13G01880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21835.16.300e-11276.64arabinose 5-phosphate isomerase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01880NO13G01880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01880.1NO13G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01880.1.cds1NO13G01880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01880.1.cds2NO13G01880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01880.1.cds3NO13G01880.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01880.1 ID=NO13G01880.1|Name=NO13G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
ATGCTTGGAGCCTCCTCCTGTCGGGTAGGAATGACCATGGTACGGATGCG
GCCTTCCTTCCCCCCGGTCACCACCTCCTGGGTCTCCTCTTCCGGAGCAT
CAACCACCGCTGCTTCCTGCGCCGCCTCCACCACTCAACACCGACGCGTT
CAAGCAATGGCCTCTGTCTCTATGTCTTCTCCTTCTTCCATCGCATCCAC
CATCGCTGCCCTTTCCCCAAACAACCCCAGACTAGCAAGCCACGCTTCTC
AACTCCGTCTGCGCCTTACACAACCCCAGACCGGCAAGTCACCCTCTTTC
TCATCTTCATCTACAGCAGCCAGGAAGACGAGCAAATTAGTCCTTGGCTG
CGGAAGCAACGTCGTCGATAAATTTTACCCTTTACGAAGATGGCCCAAGG
AAGGCCAGAAGGGTTTCTTTCTGGAAGAGAATGTCTGCAGCGCCCGGGTG
GTGGGGGGCGTCACGCTCAATCACTTGGTCTGGGCCCGGGCACTCGGGAC
TCCGACGGGCTTGCTGGCGTTGCAAGGGACCGATGATAACGGGGTCGCGG
TACGGCAGACGCTTGAAGATATGGGCGTGGACACCAGTGCAATCCGTGTC
AATGAGAATTACACAACCAGTATCAGCCACTGCTTTTCTTCGCCTGGGGG
GGAAAGGACGATTCTGATGGCGCCGGCTTCTACCGCTAAGCTGGAGGCAA
CCACAATGGAACTCGAGTTTGGCTCGATCGTCCGCCACCGCGCTAGCATG
GTCACGACGGAAATCTCACAAGTCCCCCTCTCGGGTGTCTTGTTCCTTCT
TCAAACGGCGCGCCAAGCCGGAATGCCCGCCATGCTCGACGTGGACGTCT
CACCAGAAGTCGCTCTAGGCCCCGCGCAGTTAGGGTCTCAAGCAGAATTG
GTGCAGTGCGTCACCGCGGCCTCGGTTGTCAAGCTCACAGCAGACGCCGC
GAGAGAGTTGCTGGCGTTGGTGAACCCTTCATTGAAGCAGGAAGAGCAAG
AGAGGAGCTTGGATGGGCTTGCACAGCAGTTGGCGGACGCATTGAGGACA
AAGTTGTGTGTGGTGACGGATGGGAGCAAGGGTTTGGCATTAGCGTTGGG
AAGGAGGTCGATGAGGGAAAGAGGAGGAGAAAAAAAGGGGGGGGGGGAGG
AAGTGTGA
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protein sequence of NO13G01880.1

>NO13G01880.1-protein ID=NO13G01880.1-protein|Name=NO13G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MLGASSCRVGMTMVRMRPSFPPVTTSWVSSSGASTTAASCAASTTQHRRV
QAMASVSMSSPSSIASTIAALSPNNPRLASHASQLRLRLTQPQTGKSPSF
SSSSTAARKTSKLVLGCGSNVVDKFYPLRRWPKEGQKGFFLEENVCSARV
VGGVTLNHLVWARALGTPTGLLALQGTDDNGVAVRQTLEDMGVDTSAIRV
NENYTTSISHCFSSPGGERTILMAPASTAKLEATTMELEFGSIVRHRASM
VTTEISQVPLSGVLFLLQTARQAGMPAMLDVDVSPEVALGPAQLGSQAEL
VQCVTAASVVKLTADAARELLALVNPSLKQEEQERSLDGLAQQLADALRT
KLCVVTDGSKGLALALGRRSMRERGGEKKGGGEEV*
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mRNA from alignment at chr13:547477..549108-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01880.1 ID=NO13G01880.1|Name=NO13G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp|location=Sequence derived from alignment at chr13:547477..549108- (Nannochloropsis oceanica)
ATGCTTGGAGCCTCCTCCTGTCGGGTAGGAATGACCATGGTACGGATGCG GCCTTCCTTCCCCCCGGTCACCACCTCCTGGGTCTCCTCTTCCGGAGCAT CAACCACCGCTGCTTCCTGCGCCGCCTCCACCACTCAACACCGACGCGTT CAAGCAATGGCCTCTGTCTCTATGTCTTCTCCTTCTTCCATCGCATCCAC CATCGCTGCCCTTTCCCCAAACAACCCCAGACTAGCAAGCCACGCTTCTC AACTCCGTCTGCGCCTTACACAACCCCAGACCGGCAAGTCACCCTCTTTC TCATCTTCATCTACAGCAGCCAGGAAGACGAGCAAATTAGTCCTTGGCTG CGGAAGGTGCGTCTATTGATTGATGTGTGCCGCCTTTTTCTATCCGATCT TTTTATATATCTACCTCATGAATATTTTTTATGTAGATAATGTTTTGTGC CGTACTTAGAGAGCACCCGGTAGTACTTCTGCCTTTCATCGATCGAGCAG GACTGTCTGCAAGAGTCATTTTGGCGCCCACAGAATTAACCGATGCCAAT CGCAATTAATGCTTTATCAATGAAGTCAAACAAATAAAAATGATAAAAAT AAAATAAAATATTAAGGACTTAATCCCCTTCCTCACTCCCATCAGCAACG TCGTCGATAAATTTTACCCTTTACGAAGATGGCCCAAGGAAGGCCAGAAG GGTTTCTTTCTGGAAGAGAATGTCTGCAGCGCCCGGGTGGTGGGGGGCGT CACGCTCAATCACTTGGTCTGGGCCCGGGCACTCGGGACTCCGACGGGCT TGCTGGCGTTGCAAGGGACCGATGATAACGGGGTCGCGGTACGGCAGACG CTTGAAGATATGGGCGTGGACACCAGTGCAATCCGTGTCAATGAGAATTA CACAACCAGTATCAGCCACTGCTTTTCTTCGCCTGGGGGGGAAAGGACGA TTCTGATGGCGCCGGGTAAGTGGAAGGGCGAGGAAGGAGAAAGGAGGAAG AAGGCAAAATGGAAAGGAGGGAAATTGGATTGGGTCCGACACCCATATTG AATTTGATCGTATGCCTTCGCTTCTTCCTACAGAGTGTAGGAAGAAGCGA GAAACTCACTCTACCTTTTCCTCCCCTCCCTCCTGTTCCTCCCTCGCTAG CTTCTACCGCTAAGCTGGAGGCAACCACAATGGAACTCGAGTTTGGCTCG ATCGTCCGCCACCGCGCTAGCATGGTCACGACGGAAATCTCACAAGTCCC CCTCTCGGGTGTCTTGTTCCTTCTTCAAACGGCGCGCCAAGCCGGAATGC CCGCCATGCTCGACGTGGACGTCTCACCAGAAGTCGCTCTAGGCCCCGCG CAGTTAGGGTCTCAAGCAGAATTGGTGCAGTGCGTCACCGCGGCCTCGGT TGTCAAGCTCACAGCAGACGCCGCGAGAGAGTTGCTGGCGTTGGTGAACC CTTCATTGAAGCAGGAAGAGCAAGAGAGGAGCTTGGATGGGCTTGCACAG CAGTTGGCGGACGCATTGAGGACAAAGTTGTGTGTGGTGACGGATGGGAG CAAGGGTTTGGCATTAGCGTTGGGAAGGAGGTCGATGAGGGAAAGAGGAG GAGAAAAAAAGGGGGGGGGGGAGGAAGTGTGA
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Coding sequence (CDS) from alignment at chr13:547477..549108-

>NO13G01880.1 ID=NO13G01880.1|Name=NO13G01880.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr13:547477..549108- (Nannochloropsis oceanica)
ATGCTTGGAGCCTCCTCCTGTCGGGTAGGAATGACCATGGTACGGATGCG
GCCTTCCTTCCCCCCGGTCACCACCTCCTGGGTCTCCTCTTCCGGAGCAT
CAACCACCGCTGCTTCCTGCGCCGCCTCCACCACTCAACACCGACGCGTT
CAAGCAATGGCCTCTGTCTCTATGTCTTCTCCTTCTTCCATCGCATCCAC
CATCGCTGCCCTTTCCCCAAACAACCCCAGACTAGCAAGCCACGCTTCTC
AACTCCGTCTGCGCCTTACACAACCCCAGACCGGCAAGTCACCCTCTTTC
TCATCTTCATCTACAGCAGCCAGGAAGACGAGCAAATTAGTCCTTGGCTG
CGGAAGCAACGTCGTCGATAAATTTTACCCTTTACGAAGATGGCCCAAGG
AAGGCCAGAAGGGTTTCTTTCTGGAAGAGAATGTCTGCAGCGCCCGGGTG
GTGGGGGGCGTCACGCTCAATCACTTGGTCTGGGCCCGGGCACTCGGGAC
TCCGACGGGCTTGCTGGCGTTGCAAGGGACCGATGATAACGGGGTCGCGG
TACGGCAGACGCTTGAAGATATGGGCGTGGACACCAGTGCAATCCGTGTC
AATGAGAATTACACAACCAGTATCAGCCACTGCTTTTCTTCGCCTGGGGG
GGAAAGGACGATTCTGATGGCGCCGGCTTCTACCGCTAAGCTGGAGGCAA
CCACAATGGAACTCGAGTTTGGCTCGATCGTCCGCCACCGCGCTAGCATG
GTCACGACGGAAATCTCACAAGTCCCCCTCTCGGGTGTCTTGTTCCTTCT
TCAAACGGCGCGCCAAGCCGGAATGCCCGCCATGCTCGACGTGGACGTCT
CACCAGAAGTCGCTCTAGGCCCCGCGCAGTTAGGGTCTCAAGCAGAATTG
GTGCAGTGCGTCACCGCGGCCTCGGTTGTCAAGCTCACAGCAGACGCCGC
GAGAGAGTTGCTGGCGTTGGTGAACCCTTCATTGAAGCAGGAAGAGCAAG
AGAGGAGCTTGGATGGGCTTGCACAGCAGTTGGCGGACGCATTGAGGACA
AAGTTGTGTGTGGTGACGGATGGGAGCAAGGGTTTGGCATTAGCGTTGGG
AAGGAGGTCGATGAGGGAAAGAGGAGGAGAAAAAAAGGGGGGGGGGGAGG
AAGTGTGA
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Synonyms
Publications