NO13G01860, NO13G01860 (gene) Nannochloropsis oceanica

Overview
NameNO13G01860
Unique NameNO13G01860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4601
Alignment locationchr13:544539..549139 +

Link to JBrowse

Properties
Property NameValue
DescriptionGcn5-related n-acetyltransferase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:544539..549139 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016181Acyl_CoA_acyltransferase
IPR000182GNAT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
[Close]
BLAST of NO13G01860 vs. NCBI_GenBank
Match: EWM21851.1 (gcn5-related n-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 224.9 bits (572), Expect = 2.400e-55
Identity = 124/188 (65.96%), Postives = 142/188 (75.53%), Query Frame = 0 
Query:   18 LLLAIMLVQDGLSFVLRPFSMPAVQRASHTFQSAVQVSRVTNPADAIEISEFFVTSFWDAPITKAKQKDQLKSEVYRDLTTRYIGKGGAGGXXSAASARVPAATGMGKSALLVAKEGGKVIGCVGLETRVIREGQVTKFEVVGKGDAPGTSIGPVVANLAVDRKLRRKGIGKKILAECEKIVKGWGFQ 206
            LLL    +     FVL P    A  RA    Q A++VSRVTNPA+A  ISEFFV+SFWD PITK +Q++QLKSEVYRDLT RYI   G  G  S A +R+ AA   GKSALLVAKEGGKV+GC GLETRVIREG VTK+EVV +GD PGT +GPV+ANLAVDR LRRKG+GKKIL ECE++VKGWGFQ
Sbjct:   22 LLLLASFIHTSQGFVLVPQRPAAAPRALRP-QYAIRVSRVTNPAEAEGISEFFVSSFWDTPITKPRQREQLKSEVYRDLTARYICGAGKSGASSPAGSRMGAA--RGKSALLVAKEGGKVVGCGGLETRVIREGLVTKYEVVKRGDPPGTCLGPVLANLAVDRTLRRKGVGKKILMECERVVKGWGFQ 206
[Close]
BLAST of NO13G01860 vs. NCBI_GenBank
Match: CBJ49195.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.3 bits (207), Expect = 5.100e-13
Identity = 63/194 (32.47%), Postives = 97/194 (50.00%), Query Frame = 0 
Query:   42 QRASHTFQSAVQVSRVTNPADAIEISEFFVTSFWDAPITKAKQKDQLKSEVYRDLTTRYIGKGGAGGXXSAASARVPAATGMG----KSALLVAK-EGGKVIGCVGLETRVIREGQVTKFEVVGKGDAP---GTSIGPVVANLAVDRKLRRKGIGKKILAECEKIVKGWGFQ-----VRRDGRRAGMGESEGGY 223
            +R  H+F+   ++  + N AD  E +EFFV +FWD  +  + QK  L  E+  D   RY                    T MG    +S L+VA+  GG++IGC+ +E  V    +V    V  +G +P   G  + P++ANLAV R  RRKG+ K+++  CE + +GWG+      V  + +RA    S+ GY
Sbjct:   81 ERRGHSFRMVTRL-EIVNDADIPETAEFFVENFWDDAVAPS-QKRSLVRELVSDYRRRY-------------------GTLMGNRKLQSMLMVARGNGGEIIGCIAVEVSVCMGERV---GVKARGISPNAEGAELRPILANLAVARSERRKGLAKRLVKHCEDVCRGWGYDEVLLLVEENNKRARRLYSKLGY 250
The following BLAST results are available for this feature:
BLAST of NO13G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21851.12.400e-5565.96gcn5-related n-acetyltransferase [Nannochloropsis ... [more]
CBJ49195.15.100e-1332.47conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001734NSK001734Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01860.1NO13G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G01860.2NO13G01860.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|113785gene_6819Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100051g32gene8606Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01860.1NO13G01860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G01860.2NO13G01860.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01860 ID=NO13G01860|Name=NO13G01860|organism=Nannochloropsis oceanica|type=gene|length=4601bp
GGAAAAGCATGGCCGTTGCCGGGCTTCCGTGAGCGGCAGCGATGGCAAAA
TGGCCGGAATGAGCAACCATAGGACAAAACTGCCGTGGTGTCCTGCGCGC
TCCAGCAAGTCTAGGTCTTGTTATGGGGAAATCTTTTCAGTGTATTCACA
TCGCAGACATCCCTATTCTCTTCACTCGAATCGACAGGTGGCGACAAGCA
AACGGGGCAGCGGGCGGAGGCATCATAACTATCGTTAGCCATGCGATTCA
GCAGTGTGCTCGGTTTGCCCTCCACGCTGCGCCTTTTGCTCCTCCTCCTC
GCCATCATGCTTGTTCAGGACGGACTCAGCTTTGTGCTGCGACCATTCTC
GATGCCCGCCGTCCAACGAGgtaagaagtaagggtgtatgaaatgcatga
tgcggtgggttcaaccccgtcgtatgcgtcgtgtatggggccccgtcctg
tgggcagggcgatatgttggggacttttaacattggtctttgcacgactt
tgtcattctcttacatattaagcctcttgtatcgtgtgactgcactaatg
tgctgcctccgagatcgcttgacctctcttcccttccacctccttttcac
cgacaacagCTTCCCACACTTTTCAAAGTGCCGTGCAAGTTTCCCGTGTC
ACCAACCCAGCGGATGCCATAGAGATCAGCGAATTTTTTGTGACGTCCTT
CTGGGACGCTCCTATCACAAAGGCCAAACAAAAAGATCAATTGAAGAGCG
AAGTTTACCGAGACCTGACCACCCGTTACATCGGCAAGGGAGGAGCAGGA
GGAGGCGCATCAGCAGCATCAGCACGAGTACCAGCAGCGACAGGGATGGG
GAAATCGGCGCTGCTGGTCGCGAAGGAAGGAGGGAAGGTGATTGGATGTG
TGGGGTTAGAAACGCGAGTGATCCGCGAGGGGCAAGTCACTAAATTTGAG
GTGGTTGGAAAAGGAGACGCCCCAGGGACAAGCATTGGACCTGTAGTGGC
TAATCTAGCAGTGGATCGAAAGTTGAGAAGGAAGGGTATAGGAAAAAAGA
TATTGGCGGAGTGCGAGAAGATCGTGAAGGGGTGGGGGTTCCAGgtacgg
agggatgggaggagggctgggatgggagaaagtgagggtggctatgggtg
gtgaaggacgcggtctaggatgacggtcatccacatatctatatccttac
ttatttccatctgtttcttttctctttctccgcactcactctccctcctt
agGAGCTATGGTTGGTGGTGGACGAGAAGAACAAAGCTGCCCGGGGTCTC
TACGAAAAAAATGGCTACGAGCTCGTAGCACGCGACCCGCGCGGTATGAA
AGTCATTCCCACCGAATGGCAATTGAAGGAAGTTCCTGTAACAAATTTGT
GTATGTGCAAGGACTTGAAGAAGGGAGGGAAGGGGGGGGAAGGAGTCTTG
GGGGGGATCCTGGGAGGATTATTTGGAAGGAGATAAAGGAGGTAGCGAGG
GTAAATGCGTCAGACAGCTTTGCTGGTAGTGGGATAGACATTAGCAACAA
AGAGCAAGTAGAGGGAGCGATTTACCATACAAAAAAGAAAAACAAAGTGA
ATGTGATACGTATAAGCGTCCTTTACATATATCTTTAAGAGAGCGAAGGC
AAAGTTTGCAAGAAAAGAGCAAAGAAAAGGGGTGACAGGGACCGGAGCCT
TTACTCCACCCTCGAAATCGGTGCGTGTTTCCTCTTGTTCTGTGACATTT
TCTATTTTATTCAATTATTTCTACCAATCCGTTTACTTTCTCTTTCTTTC
ATATACACCCATCCACACCCGTACTCACACATACCCACACACTATCGTCC
TTTTTAAGGCCTCGACAACGCCGACGATGAGGATGAAGAAGCAGTAGCTG
CAGTACCTGGCACAGGCGGTGGTCCGACCACGCCCGTAGATGATGAGGTG
GTGCAGGAAGCAGTAGAAGCCAAAGAGGATGAAACCGCCGCCCCAATGCT
CCCCCCAGGATGGTTGTCGAGGAAATCCAAGACGGTGAAATGAGTCGCTG
CCGCCACACCAGACACAAATGCATTGCTCACTGCTTCATTGACCACAATT
GACCTTGAGGGGATTTTCCCAAGCAATTCCGAAGTACTTTTGGCGTGTAT
GTGGATATCGGCAAGCTGGGCGAGGGGCGAAGATGGGTTCCGGGTGATTG
CGATGACGTCCACTCCTCTTGCGCGGACACGTCGAGTGGCGTCGATTAAT
TCGTTGGTTTTCCCAGAGGAGGAGAGGCAGACCAAGACATCGCCTCGCGC
AAGAGACCCCATGTCTCCATGCACGAAGTCAGTGGCCGGGACATGGCTAC
TCCGGATGGAGATAGACCGCAGGCTGGAGGCGAGCCGCGCGGCAACCAAG
CCACTCTTTCCAATCCCACTGGTATAAATGTGTGTTTTTTTGGGCGAGTT
CGTGTGTGCTTCCGCAAGCAAGTCAATCACCTTCTTAATCTTATCCTCCT
TCTCATGCAATGACAAACCAGTACTCAGTGCCTTGAGCGCCCGTGCGTCC
GCGTCCAGACTCCTCGCATATGCCTGAATAACAGGAGAGCGACCCTTTAA
TCCAGCAGTCAACGCTGCCACAGCCTCTGTTGACGACACGGATGAACTCT
GACTCAACTCCATATCCAACAAAGCAGCTGCATCAACCAGCGGCTGCGCG
TTCCCTGCAAGCTGCAACACCCTTGCTGCACTCTTTCCCGGCGTTGGCAA
AGCTCCCTTCACTTCCACACACGCTGCTCCCGCTGCGGCTGCCACCCTCC
CCATCCGCAACAACCCCTCCTGATTGCTAGGGTACCCATGCGCGTGCAAA
CTAGCCACCATCCCGCCAAAAGCAGCATCCCCCGCCCCCGTGAAATCCAC
CAAATTAAGACCCTTCAAACCCGGAACAAACACAGGATTCACACTTCCTC
CCCCCCCCCCTTTTTTTCTCCTCCTCTTTCCCTCATCGACCTCCTTCCCA
ACGCTAATGCCAAACCCTTGCTCCCATCCGTCACCACACACAACTTTGTC
CTCAATGCGTCCGCCAACTGCTGTGCAAGCCCATCCAAGCTCCTCTCTTG
CTCTTCCTGCTTCAATGAAGGGTTCACCAACGCCAGCAACTCTCTCGCGG
CGTCTGCTGTGAGCTTGACAACCGAGGCCGCGGTGACGCACTGCACCAAT
TCTGCTTGAGACCCTAACTGCGCGGGGCCTAGAGCGACTTCTGGTGAGAC
GTCCACGTCGAGCATGGCGGGCATTCCGGCTTGGCGCGCCGTTTGAAGAA
GGAACAAGACACCCGAGAGGGGGACTTGTGAGATTTCCGTCGTGACCATG
CTAGCGCGGTGGCGGACGATCGAGCCAAACTCGAGTTCCATTGTGGTTGC
CTCCAGCTTAGCGGTAGAAGCTAGCGAGGGAGGAACAGGAGGGAGGGGAG
GAAAAGGTAGAGTGAGTTTCTCGCTTCTTCCTACACTCTGTAGGAAGAAG
CGAAGGCATACGATCAAATTCAATATGGGTGTCGGACCCAATCCAATTTC
CCTCCTTTCCATTTTGCCTTCTTCCTCCTTTCTCCTTCCTCGCCCTTCCA
CTTACCCGGCGCCATCAGAATCGTCCTTTCCCCCCCAGGCGAAGAAAAGC
AGTGGCTGATACTGGTTGTGTAATTCTCATTGACACGGATTGCACTGGTG
TCCACGCCCATATCTTCAAGCGTCTGCCGTACCGCGACCCCGTTATCATC
GGTCCCTTGCAACGCCAGCAAGCCCGTCGGAGTCCCGAGTGCCCGGGCCC
AGACCAAGTGATTGAGCGTGACGCCCCCCACCACCCGGGCGCTGCAGACA
TTCTCTTCCAGAAAGAAACCCTTCTGGCCTTCCTTGGGCCATCTTCGTAA
AGGGTAAAATTTATCGACGACGTTGCTGATGGGAGTGAGGAAGGGGATTA
AGTCCTTAATATTTTATTTTATTTTTATCATTTTTATTTGTTTGACTTCA
TTGATAAAGCATTAATTGCGATTGGCATCGGTTAATTCTGTGGGCGCCAA
AATGACTCTTGCAGACAGTCCTGCTCGATCGATGAAAGGCAGAAGTACTA
CCGGGTGCTCTCTAAGTACGGCACAAAACATTATCTACATAAAAAATATT
CATGAGGTAGATATATAAAAAGATCGGATAGAAAAAGGCGGCACACATCA
ATCAATAGACGCACCTTCCGCAGCCAAGGACTAATTTGCTCGTCTTCCTG
GCTGCTGTAGATGAAGATGAGAAAGAGGGTGACTTGCCGGTCTGGGGTTG
TGTAAGGCGCAGACGGAGTTGAGAAGCGTGGCTTGCTAGTCTGGGGTTGT
TTGGGGAAAGGGCAGCGATGGTGGATGCGATGGAAGAAGGAGAAGACATA
GAGACAGAGGCCATTGCTTGAACGCGTCGGTGTTGAGTGGTGGAGGCGGC
GCAGGAAGCAGCGGTGGTTGATGCTCCGGAAGAGGAGACCCAGGAGGTGG
TGACCGGGGGGAAGGAAGGCCGCATCCGTACCATGGTCATTCCTACCCGA
CAGGAGGAGGCTCCAAGCATGGCGAAAAGCTTACTGTCTTACTTTTGTGT
T
back to top

protein sequence of NO13G01860.1

>NO13G01860.1-protein ID=NO13G01860.1-protein|Name=NO13G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MRFSSVLGLPSTLRLLLLLLAIMLVQDGLSFVLRPFSMPAVQRASHTFQS
AVQVSRVTNPADAIEISEFFVTSFWDAPITKAKQKDQLKSEVYRDLTTRY
IGKGGAGGGASAASARVPAATGMGKSALLVAKEGGKVIGCVGLETRVIRE
GQVTKFEVVGKGDAPGTSIGPVVANLAVDRKLRRKGIGKKILAECEKIVK
GWGFQELWLVVDEKNKAARGLYEKNGYELVARDPRGMKVIPTEWQLKEVP
VTNLCMCKDLKKGGKGGEGVLGGILGGLFGRR*
back to top

protein sequence of NO13G01860.2

>NO13G01860.2-protein ID=NO13G01860.2-protein|Name=NO13G01860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MRFSSVLGLPSTLRLLLLLLAIMLVQDGLSFVLRPFSMPAVQRASHTFQS
AVQVSRVTNPADAIEISEFFVTSFWDAPITKAKQKDQLKSEVYRDLTTRY
IGKGGAGGGASAASARVPAATGMGKSALLVAKEGGKVIGCVGLETRVIRE
GQVTKFEVVGKGDAPGTSIGPVVANLAVDRKLRRKGIGKKILAECEKIVK
GWGFQVRRDGRRAGMGESEGGYGW*
back to top
Synonyms
Publications