NO13G01610, NO13G01610 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G01610 vs. NCBI_GenBank
Match: EWM21839.1 (protein polybromo-1 [Nannochloropsis gaditana]) HSP 1 Score: 449.9 bits (1156), Expect = 3.500e-122 Identity = 374/892 (41.93%), Postives = 464/892 (52.02%), Query Frame = 0
Query: 769 SRYNFDKPVVVSYPQIADIYLAKIQKPMDTSTVRMQLRGHSYGSPKAFLGDVDLIFRNAIEFNDGARTPYEQEVVAVSRYVRRHLRRLALESLPLLDXXXXXXXXXXXXXXXXXXXXXXREEVRKRVQEKASRQLATNGGGEGGVGKFAYQEMRELIGQLKKEKRVGDFFTDEVNRSENAHYYRVIARPICFRDILKGLDSGEGGVRVGQVVEDIRLIYKNALQFNSVTEAIIPISKMICEAARLLQRKLDEKLPLVYLRIAENVERQAELKDQLKALRAEDERQRRANMAAAALTAGQPHLDLGRXXXXXXXXXRMSVQGSPSGDGSRGGEVSFALSSSLKGASPLPGKEGAMNQFLTPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQEVWAKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLVSAFGCFDLSQLGSHANSISSSSGRNRRCGTAARPVRRXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGNKVAVMELEAQLASVPPADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDTASWEVEDGSAGGVRRVRLLVRVVELPFWMG--EEGGRGVETKSPLASNALVHVTVVADAEESGEGEEEGRGGVGGMRRSRRVKLQSQRPLGLEVNGGEKRVLLKGERRKVHAKDAEAAVAVKLGGNVDVQLLLPRC-------------SSPSAEKIPSQQSLSLSSLLSDTKEWCRQARRVPFSAAFPPSSSSSSPSLHTHQIKQTTAFYSWLASLDTVAWEKGNVALSPQIQEED 1646
SRY+FDKPVVV +PQ+A YLA+I KPMDTST+R+QL+ H YGSPK FL D+DLIF NAI FNDGA TPYEQEVV VS Y+RRHL RLALE LPL + R+E R++++EKASRQLAT GG+ G+FAYQEMRELI QLKKE+RVG+FF +EVNR+EN YYRVIARPICFRDILK +D+ E GVRVGQVV DIRLIY+NALQFNS TE ++PIS++ICEAARLLQR+L+EKLPLVYLRIAENVERQ+EL+++LK LRAEDERQR A + AALT Q L + +G +G G+ G VS A + P PG + +F + XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX +AF DLS+LG+ SGR R + +G +L AQL VP + D A WE D A +RR+RLL+RVV P +G E GG E + + +L+HVTV+AD E+ GEE+ G RRSRRVKLQSQRP+GLE+NGGE+R++L+GER+KV A EAAVA++LGG V+VQL++P ++P+ E I ++ L+ L + KEWC+ ++R PS+ + Q FY WLA L+ WE+G+VA SP I+EE+
Sbjct: 21 SRYSFDKPVVVMFPQVAAAYLARIAKPMDTSTLRVQLKAHQYGSPKEFLLDMDLIFANAIAFNDGAATPYEQEVVLVSNYLRRHLDRLALECLPLEE--------EYKPGERLNLSEQRRDENRQQMEEKASRQLATMAGGD-VYGRFAYQEMRELIQQLKKERRVGEFFWEEVNRNENQGYYRVIARPICFRDILKSMDT-ETGVRVGQVVADIRLIYQNALQFNSGTETLVPISRVICEAARLLQRRLEEKLPLVYLRIAENVERQSELREKLKVLRAEDERQRHAEL--AALTTDQNAAGLA-------GGEALGPKGGLAGKGA--GAVSPAAAGGPSLHFPSPGVDAPSPRFRSDMEQAAGHSQSGRVGGNPAVGDLPQTGSLLANKLRKEKRREAELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEDEGGREGAMGGQQDTQNVSLGRDVSATADVRVEDNGGG---------------AAFQPVDLSRLGTKPG--RRHSGRVERQPVRSLLAELFPTVGHDEEAKSTSLGKELDTATGDDKQNGGGTITEDLFAQLNRVPAPEAAIRGDIDTSEKGEEEGAEDEESLSVCSSLRDAG--------------------------DDALWEDSDERA-RLRRLRLLLRVVRAPDILGGSEGGGHSEEGAAGPWAPSLMHVTVIADVEDRVLGEEDRGAHGGAKRRSRRVKLQSQRPVGLEINGGERRLILQGERQKVRAGSLEAAVALRLGGQVEVQLIVPLAPRSDFSSTSISVPNTPALENIRYRECPVLAPLFHEAKEWCKGSQRADLDM---PSAFRWTWGRRGCQPGTAADFYHWLAGLNLAIWEEGDVAFSPSIREEE 844
BLAST of NO13G01610 vs. NCBI_GenBank
Match: EWM21850.1 (Bromodomain protein [Nannochloropsis gaditana]) HSP 1 Score: 284.6 bits (727), Expect = 1.900e-72 Identity = 138/206 (66.99%), Postives = 164/206 (79.61%), Query Frame = 0
Query: 1 MDPNTKDACIKIVAGLKRTQRTFASSKDLLVGLIAYVDRVENPYDLVMADRALKGGEITSPFALVRLLRRPASNCLRFCIEEGNASYRIKARKLLDAIDKDMREQPWLGVPPLPTETYTCLDLLEALVIHNPELRMFWARIETSLMDPSLRAEYVQAVAFPMDMGRLTSEVLEDGISPSEFLAKAEAVFKNCVEFWTIQGDMAMVA 207
MD +T +AC+KI+ L+++ RTFA+SKD LVGL AYVDRVENP+DL M D+ALK GEI SP ALV+LLRRPASNCLRFCIE+GNA YR KAR LL +D ++R PWLGV PLP TYTCLDLLE LVI + ELRMFWAR+E +L+ SLRAEY +V PMDMGRLTSE+LE+GIS +EFLAKAE VF NC++FW+ D VA
Sbjct: 1 MDHSTSEACLKILGRLRKSHRTFAASKDTLVGLTAYVDRVENPWDLAMVDKALKHGEIVSPSALVQLLRRPASNCLRFCIEKGNAPYREKARHLLIQVDSELRGHPWLGVAPLPASTYTCLDLLEQLVIPHQELRMFWARVE-NLVHASLRAEYAASVDLPMDMGRLTSELLEEGISAAEFLAKAEVVFSNCIQFWSAHNDSESVA 205
BLAST of NO13G01610 vs. NCBI_GenBank
Match: GAX17223.1 (protein polybromo-1 [Fistulifera solaris]) HSP 1 Score: 82.4 bits (202), Expect = 1.500e-11 Identity = 83/307 (27.04%), Postives = 140/307 (45.60%), Query Frame = 0
Query: 770 RYNFDKPVVVSYPQIADIYLAKIQKPMDTSTVRMQ-LRGHSYGSPKAFLGDVDLIFRNAIEFNDGAR---TPYEQEVVAVSRYVRRHLRRLALESL--------PLLDXXXXXXXXXXXXXXXXXXXXXXREEVRK-RVQEKASRQLATNGGGEGGVGKFAYQEMRELIGQLKKE---KRVGDFFTDEVNRSENAHYYRVIARPICFRDILKGLDSGEGGVRVGQVVEDIRLIYKNALQFNSVTEAIIPISKMICEAARLLQRKLDEKLPLVYLRIAENVERQ------AELKDQLKALRAEDERQR 1055
++ F PV + +P + + Y KI+KPMD +TV L G+ Y +P+ FL DV L+F NAI FN R P S ++ R+ R ++LE L L+D R+E+ + ++E R L EG + E +L+ L+ + K++G F + Y IA+P+ + + + L + V+ D+RLI+ NAL++NS + S E+A + RKL+ + + L +++ +ER+ AE ++ A RAE+E+ R
Sbjct: 834 KFIFHVPVPILFPDLRESYSTKIRKPMDLTTVECTLLAGNKYATPEDFLQDVALVFSNAIRFNKDGRDIGDPLSCAYYDASVHLLRYSRWMSLELLQKYVDANSELVDEPTADSLPPFSWKLTEGNRKKARQEMEELLMKEPIERSL------EGDRYTWQEAECEKLLKALRHQSDVKQMGYF----IKTFYPPDYKAFIAKPMDWDAVNRNLKK-RHYTKFSDVIADLRLIFSNALRYNSRWKGTDTDSGRAYESAVFMSRKLEMAINKMMLSVSDRLERERIDHSNAE-REIAAAERAEEEKIR 1128
BLAST of NO13G01610 vs. NCBI_GenBank
Match: GAX18709.1 (hypothetical protein FisN_10Hh077 [Fistulifera solaris]) HSP 1 Score: 80.9 bits (198), Expect = 4.300e-11 Identity = 80/301 (26.58%), Postives = 135/301 (44.85%), Query Frame = 0
Query: 770 RYNFDKPVVVSYPQIADIYLAKIQKPMDTSTVRMQ-LRGHSYGSPKAFLGDVDLIFRNAIEFNDGAR---TPYEQEVVAVSRYVRRHLRRLALESLPLLDXXXXXXXXXXXXXXXXXXXXXXREEVRKRVQEKASRQL---ATNGGGEGGVGKFAYQEMRELIGQLKKE---KRVGDFFTDEVNRSENAHYYRVIARPICFRDILKGLDSGEGGVRVGQVVEDIRLIYKNALQFNSVTEAIIPISKMICEAARLLQRKLDEKLPLVYLRIAENVERQ------AELKDQLKALRAEDERQR 1055
++ F PV + +P + + Y KI+KPMD +TV L G+ Y +P+ FL DV L+F NAI FN R P S ++ R+ R ++LE L E RKR +++ L EG + E +L+ L+ + K++G F + Y IA+P+ + + + L + V+ D+RLI+ NAL++N+ + S E+A + RKL+ + + L +++ +ER+ AE ++ A RAE+E+ R
Sbjct: 779 KFIFHVPVPILFPDLRESYSTKIRKPMDLTTVECTLLAGNKYAAPEDFLQDVALVFSNAIRFNKDGRDIGDPLSCAYYDASVHLLRYSRWMSLELLQKYVDPNSELVDEPTADGLPPFSWKLTEGNRKRARQEMEELLMKEPIERSLEGDRYTWQEAECEKLLKALRHQSDVKQMGYF----IKTFYPPDYKAFIAKPMDWDAVNRNLKK-RHYTKFNDVIADLRLIFSNALRYNARWKGTDTDSGRAYESAVFMSRKLEMAINKMMLSVSDRLERERIDHSNAE-REIAVAERAEEEKIR 1073
BLAST of NO13G01610 vs. NCBI_GenBank
Match: EJK46606.1 (hypothetical protein THAOC_34720 [Thalassiosira oceanica]) HSP 1 Score: 74.7 bits (182), Expect = 3.100e-9 Identity = 74/294 (25.17%), Postives = 127/294 (43.20%), Query Frame = 0
Query: 770 RYNFDKPVVVSYPQIADIYLAKIQKPMDTSTVRMQLRGHSYGSPKAFLGDVDLIFRNAIEFNDGARTPYEQEVVA---VSRYVRRHLRRLALESL-PLLDXXXXXXXXXXXXXXXXXXXXXXREEVRKRVQEKASRQL--ATNGGGEGGVGKFAYQEMRELIGQLKKEKRVGDFFTDEVNRSENAHYYRVIARPICF---RDILKGLDSGEGGVRVGQVVEDIRLIYKNALQFNSVTEAIIPISKMICEAARLLQRKLDEKLPLVYLRIAENVERQAELKDQLKALRAEDERQR 1055
+Y F PV + +P+I Y KI+ PMD +T +L Y + + F+ D+ L+F NAIEFN E A S ++ ++ R ++LE L P L R RK ++ +L T G + + + + I + K + F S A Y I++PI + D LK +G+VV+D+RLI+ NAL++N + S+ ++A+ + +KL+ + + L + + + R E D + R + +QR
Sbjct: 710 KYIFHVPVPILFPEIRVSYAEKIKNPMDLTTAESKLLQGVYENAEEFVRDIALVFANAIEFNKEGHDLGEGMSCAYYEASTHLLKYSRWISLEILQPFLSKSSSSVVVESGAAASWKLTQRNRMFARKEMESIVFGELIDRTEPGDRYSWTETECERLMKSIRHMSDMKHMQYFLE---MSSLPADYTAYISKPIAWGLCNDKLK----ERRYATIGEVVDDLRLIFANALKYNEGPRHVNVTSQSAYDSAKYMSQKLEAAIDKMLLSVGDRIGR--ERVDMMTVRRDMEAKQR 994 The following BLAST results are available for this feature:
BLAST of NO13G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G01610 ID=NO13G01610|Name=NO13G01610|organism=Nannochloropsis oceanica|type=gene|length=5422bpback to top protein sequence of NO13G01610.1 >NO13G01610.1-protein ID=NO13G01610.1-protein|Name=NO13G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1696bpback to top Synonyms
Publications
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