NO13G01320, NO13G01320 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G01320
Unique Name	NO13G01320
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3369
Alignment location	chr13:398546..401914 +

Link to JBrowse

Properties


Property Name	Value
Description	Ubiquitin carboxyl-terminal hydrolase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:398546..401914 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding
GO:0046872	metal ion binding
GO:0016787	hydrolase activity
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR000433	Znf_ZZ
IPR001810	F-box_dom

Homology

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BLAST of NO13G01320 vs. NCBI_GenBank
Match: EWM21786.1 (ubiquitin carboxyl-terminal hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 766.1 bits (1977), Expect = 1.400e-217
Identity = 505/1175 (42.98%), Postives = 595/1175 (50.64%), Query Frame = 0

Query:   12 IETTAAARSP-----PPGTTVRPSSR--SGSNDASLGSSLRLPTGVIHSVLSHLEARDLSTSAQVCCELYECCDHPALWEAAGQVTYPHAEKLGALQLYNGEWKTLLRDQNRRDRSTLFEWEVTDCLTNTARRFSPTFLLGDYTFQLIVDPNGNPYVPLAKPGVSVYLTCCPTQYVRGLSPSGRLCMDPMADYLPNIHSANGLPPIDTWECCVAFALAVVNQTGARQ---------------------------------HANGYLSEKGSIKVQAHLRLACLSLKLFTSDAMKGYRGFGLAEFSNAALTARGGKVRSCLSXXXXXXXXXPAEQPQVAFTAAVD--IEGLGDGEGGLGGVIMEMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLNPLPLXXXXXXXXXXXXNPSSSPASWTCAPTTAVAPPTKDTDSSNPSLSSSLAPTHPPPFRVYEVFQCMTVAAFRRLLARDLLPPSLTFSSSSSLRLWTVTQPWADLPAAPRELVRSLPPSDHPSLPEDLDWAEASIETLEEHQTLAMALDAHVDSVGEARVWVEIAGDGGLKSATGG------------GKARAGLVRVGKEEALEVTPPGLRMLPDPLEPAGHTEWRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEFWAHALLPITTPIKFLLDYMSKEALPEEEGGREG-----------------------GGKGLRIVVETPPTNWQ-------------SPALSDGEGNGG---RGVERVGGGST----AALDRQDCQKHEEYER----GGSHFRCLDYHPTKTLKDLRLENGQILCFFLVGQEGEVQRAYQNLAHALLTEAASVVDWTGPTAKVEERRCPLSIMLQQ---------PRPSSL---PVSLSADASLCVRPRGSRLRPRLLLDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSLGRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVETHRYRFQGRAWAKEEYQGHREGHAMVCLQPIPATVAMLKSFRVREEEE 1074
            + T  AA  P      P   + P+ R   G   A    S RLPT VIH VLS L  R+L   AQVCCELYECCD+P LWE AG+  YPHAEKLG   LY+GEWKTLLRD+NRRDRS LFEWEVTDCL NT RRFSPTF LG Y+FQLIVDP+GNPYVPLAKPGVSVYLTC PTQY+RGL+PSGR+C+DP AD +P ++ A+     D WEC VAF LA+VNQTGAR+                                  ANGYLSE GSIKV+A LRLACLSLK+FTSD M+ Y GFGLA     A     G  RS L            +    AF  + D     L      L  V+                    XXXXXXXXXXXXXX       P+              SS P S  C   TA  P      S+ PS S    P    PF  YEVFQCMTVAAFR +LA+D     L  SS + LRLW VTQPWAD PAAPREL+R++P  DHP+LP+D ++ E  +  LEEHQTLAMAL AH+D + E RVW E+AGDGGL  A GG            GKA   LV V +E  L+++P  LRMLPDP +P  + +  E                                                                                                                                                               +EF +HALLPI TP+  L  +M+ E LP    G+ G                           LR +VETPP NWQ             S   SD + NG     G  R GG         L   D  + E+  R        FRCL+YHPTKT+ DLRLENG IL FF  GQE  +Q  Y ++A  LL  AA++ DWTGP+AKVEE  CP+++ L Q         PR SSL   P      +++C+RPRGSRLRPRL L+TV DLFEK+G QRFRVRNTFFE  HT AR+TL+Y  GRHLGFCCDRCG LDF GPR+KCC CQD+DLC  C  LPVE HRYRF+GR+WA+EE+ GH + HAMVCLQPIP+T+AML+ F V++  E
Sbjct:    1 MRTAGAAGDPVIEPSSPSHCLLPTHRHERGDTAAPFDPSFRLPTAVIHLVLSFLNGRELCICAQVCCELYECCDYPPLWEGAGRAAYPHAEKLGTTNLYSGEWKTLLRDRNRRDRSVLFEWEVTDCLRNTNRRFSPTFTLGAYSFQLIVDPSGNPYVPLAKPGVSVYLTCSPTQYMRGLAPSGRMCVDPAADEMPYLNPADSRAE-DVWECAVAFTLAIVNQTGARRDLPWSSNLLHDRFRPHCREWGVHRLVSLRRLQDSANGYLSETGSIKVEACLRLACLSLKVFTSDGMREYAGFGLANVHAPAPAFSRGGTRSFLQPPPRPRHLASTD----AFPPSPDTYTTSLLTTTTALDPVLAVPPLPSYAVLLPEADGMEEXXXXXXXXXXXXXXWGMETGEPVN-------------SSPPFSPEC---TADRP-----RSNRPSPSCHPFPASTTPFWGYEVFQCMTVAAFRAILAKD-----LNLSSPNHLRLWIVTQPWADSPAAPRELIRTVPLPDHPALPDDFNYEELPLSVLEEHQTLAMALGAHMDCLDEVRVWAEVAGDGGLTVAEGGKEGGREKGKGPSGKALKTLVPVSREAELDISPQTLRMLPDPTDPVQYMDAVE-------------------DRGDGGFGRGGDGAVEEQGIPESEPDQGVLGMSSASAAQARQMPTRGGATGEKEFEGDARDDPGVPCDTTESGQDVATAPALDSSSLSPLSEGDSQIAAGSMAPPESPTFILLFFKRLVPAFPVGPGKLGSSAIPATGASLEFSSHALLPIDTPVHALFTFMASEMLPRGGMGKSGQTNAERNMLATADPGIAPMVSGSSAAMLRCLVETPPNNWQPASAGSERAKGRISSLWSDRKENGSFIYMGDNRYGGKDKDSLHVELGEADSPRGEQLGREEGARSVRFRCLNYHPTKTISDLRLENGHILSFFQAGQEDLIQHVYCSMAQNLLRTAAAIYDWTGPSAKVEETPCPINVTLHQRHDYVPGNFPRVSSLSTAPWLAPWPSAMCLRPRGSRLRPRLTLETVVDLFEKVGNQRFRVRNTFFEQEHTVARQTLDYGYGRHLGFCCDRCGELDFTGPRYKCCACQDFDLCHDCHLLPVEGHRYRFKGRSWAREEFSGHTDAHAMVCLQPIPSTLAMLRRFSVKKSAE 1125

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BLAST of NO13G01320 vs. NCBI_GenBank
Match: XP_005856087.1 (ubiquitin carboxyl-terminal hydrolase and or f-box, partial [Nannochloropsis gaditana CCMP526] >EKU20273.1 ubiquitin carboxyl-terminal hydrolase and or f-box, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 422.2 bits (1084), Expect = 5.000e-114
Identity = 272/531 (51.22%), Postives = 310/531 (58.38%), Query Frame = 0

Query:   23 PGTTVRPSSR--SGSNDASLGSSLRLPTGVIHSVLSHLEARDLSTSAQVCCELYECCDHPALWEAAGQVTYPHAEKLGALQLYNGEWKTLLRDQNRRDRSTLFEWEVTDCLTNTARRFSPTFLLGDYTFQLIVDPNGNPYVPLAKPGVSVYLTCCPTQYVRGLSPSGRLCMDPMADYLPNIHSANGLPPIDTWECCVAFALAVVNQTGARQ---------------------------------HANGYLSEKGSIKVQAHLRLACLSLKLFTSDAMKGYRGFGLAEFSNAALTARGGKVRSCLSXXXXXXXXXPAEQPQVAFTAAVD--IEGLGDGEGGLGGVIMEMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLNPLPLXXXXXXXXXXXXNPSSSPASWTCAPTTAVAPPTKDTDSSNPSLSSSLAPTHPPPFRVYEVFQCMTVAAFRRLLARDLLPPSLTFSSSSSLRLWTVTQPWADLPAAPRELVRSLPPSDHPSLPEDLDWAEASIETLEEHQTLAM 517
            P   + P+ R   G   A    S RLPT VIH VLS L  R+L   AQVCCELYECCD+P LWE AG+  YPHAEKLG   LY+GEWKTLLRD+NRRDRS LFEWEVTDCL NT RRFSPTF LG Y+FQLIVDP+GNPYVPLAKPGVSVYLTC PTQY+RGL+PSGR+C+DP AD +P ++ A+     D WEC VAF LA+VNQTGAR+                                  ANGYLSE GSIKV+A LRLACLSLK+FTSD M+ Y GFGLA     A     G  RS L            +    AF  + D     L      L  V+                    XXXXXXXXXXXXXX       P+              SS P S  C   TA  P      S+ PS S    P    PF  YEVFQCMTVAAFR +LA+D     L  SS + LRLW VTQPWAD PAAPREL+R++P  DHP+LP+D ++ E  +  LEEHQTLAM
Sbjct:   10 PSHCLLPTHRHERGDTAAPFDPSFRLPTAVIHLVLSFLNGRELCICAQVCCELYECCDYPPLWEGAGRAAYPHAEKLGTTNLYSGEWKTLLRDRNRRDRSVLFEWEVTDCLRNTNRRFSPTFTLGAYSFQLIVDPSGNPYVPLAKPGVSVYLTCSPTQYMRGLAPSGRMCVDPAADEMPYLNPADSRAE-DVWECAVAFTLAIVNQTGARRDLPWSSNLLHDRFRPHCREWGVHRLVSLRRLQDSANGYLSETGSIKVEACLRLACLSLKVFTSDGMREYAGFGLANVHAPAPAFSRGGTRSFLQPPPRPRHLASTD----AFPPSPDTYTTSLLTTTTALDPVLAVPPLPSYAVLLPEADGMEEXXXXXXXXXXXXXXWGMETGEPVN-------------SSPPFSPEC---TADRP-----RSNRPSPSCHPFPASTTPFWGYEVFQCMTVAAFRAILAKD-----LNLSSPNHLRLWIVTQPWADSPAAPRELIRTVPLPDHPALPDDFNYEELPLSVLEEHQTLAM 509

[Close]

BLAST of NO13G01320 vs. NCBI_GenBank
Match: XP_005856088.1 (ubiquitin carboxyl-terminal hydrolase and or f-box, partial [Nannochloropsis gaditana CCMP526] >EKU20274.1 ubiquitin carboxyl-terminal hydrolase and or f-box, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 354.0 bits (907), Expect = 1.700e-93
Identity = 191/387 (49.35%), Postives = 234/387 (60.47%), Query Frame = 0

Query:  746 IEFWAHALLPITTPIKFLLDYMSKEALPEEEGGREG-----------------------GGKGLRIVVETPPTNWQ-------------SPALSDGEGNGG---RGVERVGGGST----AALDRQDCQKHEEYER----GGSHFRCLDYHPTKTLKDLRLENGQILCFFLVGQEGEVQRAYQNLAHALLTEAASVVDWTGPTAKVEERRCPLSIMLQQ---------PRPSSL---PVSLSADASLCVRPRGSRLRPRLLLDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSLGRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVETHRYRFQGRAWAKEEYQGHREGHAMVCLQPIPATVAMLKSFRVREEEE 1074
            +EF +HALLPI TP+  L  +M++E LP    G+ G                           LR +VETPP NWQ             S   SD + NG     G  R GG         L   D  + E+  R        FRCL+YHPTKT+ DLRLENG IL FF  GQE  +Q  Y ++A  LL  AA++ DWTGP+AKVEE  CP+++ L Q         PR SSL   P      +++C+RPRGSRLRPRL L+TV DLFEK+G QRFRVRNTFFE  HT AR+TL+Y  GRHLGFCCDRCG LDF GPR+KCC CQD+DLC  C  LPVE HRYRF+GR+WA+E++ GH + HAMVCLQPIP+T+AML+ F V++  E
Sbjct:  194 LEFSSHALLPIDTPVHALFTFMAREMLPRGGMGKSGQTNAERNMLATADPGIAPMVSGSSAAMLRCLVETPPNNWQPASAGSERAKGRISSLWSDRKENGSFIYMGDNRYGGKDKDSLHVELGEADSPRGEQLGREEGARSVRFRCLNYHPTKTISDLRLENGHILSFFQAGQEDLIQHVYCSMAQNLLRTAAAIYDWTGPSAKVEETPCPINVTLHQRHDYVPGNFPRVSSLSTAPWLAPWPSAMCLRPRGSRLRPRLTLETVVDLFEKVGNQRFRVRNTFFEQEHTVARQTLDYGYGRHLGFCCDRCGELDFTGPRYKCCACQDFDLCHDCHLLPVEGHRYRFKGRSWAREDFSGHTDAHAMVCLQPIPSTLAMLRRFSVKKSAE 580

[Close]

BLAST of NO13G01320 vs. NCBI_GenBank
Match: EWM24043.1 (potassium channel modulatory factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 199.1 bits (505), Expect = 6.900e-47
Identity = 262/1148 (22.82%), Postives = 377/1148 (32.84%), Query Frame = 0

Query:   46 LPTGVIHSVLSHLEARDLSTSAQVCCELYECCDHPALWEAAGQVTYPHAEKLGALQLYNGEWKTLLRDQNRRDRSTLFEWEVTDCLTNTARRFSPTFLLGDYTFQLIVDPNGNPYVPLAKPGVSVYLTCCPTQYVRGLSPSGRLCMDPMADYLPNIHSANGLPPIDTWECCV---AFALAVVNQTGARQHANGYLSEKGSIKVQAHLRLACLSLKLFTSDAMKGY-RGFGLAE----------FSNAALTARGGKVRSCLSXXXXXXXXXPAEQPQVAFTAAVDIEGLGDGEGGLGGVIMEMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLNPLPLXXXXXXXXXXXXNPSSSPA--SWTCAPTTAVAPPTKDTDSSNPSLSSSLAPTHPPPFRVYEVFQCMTVAAFRRLLARDLLPPSLTFSSSSSLRLWTVTQPWADLPAAPRELV------------------RSLPPSDHPSLPEDLDWAEASIETLEEHQ----------------------------TLAMALDAHVDSVGEARVWVEIAGDGGLKSATGGGKARAGLVRVGKEEALEVTPPGLRMLPDPLEPAGHTEWRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEFWAHALLPITTPIK--FLLDYMSKEALPEEEGGREGGGKGLRIVVETPPTNWQSPALSDGEGNGGRGVERVGGGSTAALDRQDCQKHEEYERGGSHFRCLDYHPTKTLKDLRLENGQILCFFLVGQEGEVQRAYQNLAHALLTEAASV------------------------------------------------VDWTGPT------------AKVEERRCPLSIMLQQPRPSSLPVSLSADASLCVRPRGSRLRPR---LLLDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLP-VETHRYRFQGRAWAKE-EYQGHREGHAMVCLQPIPATVAML 1064
            LP  ++   LS L+   L T A VC +  +  DH + WE A    +PH ++   +  YNG+WK L +D+NRR+RS +FEW VTD L+N  RR+SP+F + DYTF++IVDP GNP V   +PGVSVYL C         SP+  L                GLP     E  V    F+ AV     A             +    H+  A ++       A+ GY  G G+            FS  A   +  K R+               +      + + +  L D   G                                         D   L +              +   A   +    T A AP   D   +                  YE+F C T+ AF+ +LARDL  P     S    RLW  TQPW D    PRE++                   + PP      P  L+   A++ T  +H                             TL   L  H+D +G ARVW E A DGG  S        A +  + +EE      P L +L    +  G     +                                                                                                                                                               I + +HA++   T ++  F+L        PE  G            +ET P  WQ           G+G+ R+      A   +   +  +  R     +        TL+D+ +ENGQIL F++ G E  V+  Y+     L  EA  +                                                +  TGP+            A  E+R      +     P +L  +    +   VRPR  R  P+   L L+ V +LFE+ G Q FRVRN +++H H NAR+T++Y + GRHLGFCCDRCG  DF GPR+KCC+C DYDLC +C++ P    HRY+++ R W +E ++  H + H M  + P+P  +  L
Sbjct:    4 LPLDLLSRTLSFLDGESLLTCACVCKDFCQLTDHRSYWENAAWRLFPHLKETYDIMPYNGDWKALFQDRNRRNRSAVFEWTVTDFLSNPERRYSPSFRVEDYTFKVIVDPVGNPNVYFLEPGVSVYLAC---------SPAAPLXXXXXXXXXXXXXXXAGLPIPPVAEALVQNPGFSEAV-----AAXXXXXXXGMPTGLNPNHHMEAAAMA-------ALSGYGHGGGIGSPPGDWECCCAFSLTACNQQ-RKGRNVTWHSSMLNDRFHKNRKNWGVHSLLPVTKLKDPASGF-------------------------------------VVDDALKLKVRLRLLYLTVKVVRNAHLAAHEGFGIMDTGAEAPAGADDSLT------------------YELFHCTTLTAFKEMLARDLGMP-----SPEHFRLWVFTQPWPDTILCPREILTNAGGXXXXXXXXXXXXXXTAPPVAQNQNPHQLN-PNAAV-TPPQHTPLXXXXXXXXXXXXXXXXXXXXEDASAVTLFSLLQLHMDGLGVARVWAECAEDGGFASTPAWTSGTAAVEEMDEEER---DAPELSVLMATSQDEGQGSQPD-----------------------------------------------------------------------KGENSRGEADGCLPDIPGLHQCQAHQTLSPVALMPDSRDLCHQSHAAQSAAAATEDPAALAVVPPCPMPSPNMHVLVFLKWMNPVSGRIAYLSHAVVTHRTLLRHMFVLVGGLVHRPPETLGAH----------METTPATWQ---------RCGQGMHRMIACPLPAQHLRGVARPRDNNRERPEEQA-------TLRDIGVENGQILTFYVEGMEAVVEGTYRGYLEELFHEACVMYYGQDSLQAAERARSLMCMDVEDEMVEEDCSQQYVGKSSSAGDQKNERMGKTGPSRGNTKKGVTAAGATTEDREGTAGALACFLAPPALANAALFSSRPRVRPR--RASPKYSTLKLEQVVNLFERFGYQSFRVRNVYYQHKHMNARQTMDYVIQGRHLGFCCDRCGATDFTGPRYKCCMCYDYDLCGSCQEHPQAAAHRYKYEHRGWRRENQFSEHSKNHRMQMILPVPYNLRSL 965

[Close]

BLAST of NO13G01320 vs. NCBI_GenBank
Match: XP_005854280.1 (potassium channel modulatory factor 1 [Nannochloropsis gaditana CCMP526] >EKU22085.1 potassium channel modulatory factor 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 169.9 bits (429), Expect = 4.500e-38
Identity = 245/1091 (22.46%), Postives = 350/1091 (32.08%), Query Frame = 0

Query:  103 YNGEWKTLLRDQNRRDRSTLFEWEVTDCLTNTARRFSPTFLLGDYTFQLIVDPNGNPYVPLAKPGVSVYLTCCPTQYVRGLSPSGRLCMDPMADYLPNIHSANGLPPIDTWECCV---AFALAVVNQTGARQHANGYLSEKGSIKVQAHLRLACLSLKLFTSDAMKGY-RGFGLAE----------FSNAALTARGGKVRSCLSXXXXXXXXXPAEQPQVAFTAAVDIEGLGDGEGGLGGVIMEMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLNPLPLXXXXXXXXXXXXNPSSSPA--SWTCAPTTAVAPPTKDTDSSNPSLSSSLAPTHPPPFRVYEVFQCMTVAAFRRLLARDLLPPSLTFSSSSSLRLWTVTQPWADLPAAPRELV------------------RSLPPSDHPSLPEDLDWAEASIETLEEHQ----------------------------TLAMALDAHVDSVGEARVWVEIAGDGGLKSATGGGKARAGLVRVGKEEALEVTPPGLRMLPDPLEPAGHTEWRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEFWAHALLPITTPIK--FLLDYMSKEALPEEEGGREGGGKGLRIVVETPPTNWQSPALSDGEGNGGRGVERVGGGSTAALDRQDCQKHEEYERGGSHFRCLDYHPTKTLKDLRLENGQILCFFLVGQEGEVQRAYQNLAHALLTEAASV------------------------------------------------VDWTGPT------------AKVEERRCPLSIMLQQPRPSSLPVSLSADASLCVRPRGSRLRPR---LLLDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLP-VETHRYRFQGRAWAKE-EYQGHREGHAMVCLQPIPATVAML 1064
            YNG+WK L +D+NRR+RS +FEW VTD L+N  RR+SP+F + DYTF++IVDP GNP V   +PGVSVYL C         SP+  L                GLP     E  V    F+ AV     A             +    H+  A ++       A+ GY  G G+            FS  A   +  K R+               +      + + +  L D   G                                         D   L +              +   A   +    T A AP   D   +                  YE+F C T+ AF+ +LARDL  P     S    RLW  TQPW D    PRE++                   + PP      P  L+   A++ T  +H                             TL   L  H+D +G ARVW E A DGG  S        A +  + +EE      P L +L    +  G     +                                                                                                                                                               I + +HA++   T ++  F+L        PE  G            +ET P  WQ           G+G+ R+      A   +   +  +  R     +        TL+D+ +ENGQIL F++ G E  V+  Y+     L  EA  +                                                +  TGP+            A  E+R      +     P +L  +    +   VRPR  R  P+   L L+ V +LFE+ G Q FRVRN +++H H NAR+T++Y + GRHLGFCCDRCG  DF GPR+KCC+C DYDLC +C++ P    HRY+++ R W +E ++  H + H M  + P+P  +  L
Sbjct:    3 YNGDWKALFQDRNRRNRSAVFEWTVTDFLSNPERRYSPSFRVEDYTFKVIVDPVGNPNVYFLEPGVSVYLAC---------SPAAPLXXXXXXXXXXXXXXXAGLPIPPVAEALVQNPGFSEAV-----AAXXXXXXXGMPTGLNPNHHMEAAAMA-------ALSGYGHGGGIGSPPGDWECCCAFSLTACNQQ-RKGRNVTWHSSMLNDRFHKNRKNWGVHSLLPVTKLKDPASGF-------------------------------------VVDDALKLKVRLRLLYLTVKVVRNAHLAAHEGFGIMDTGAEAPAGADDSLT------------------YELFHCTTLTAFKEMLARDLGMP-----SPEHFRLWVFTQPWPDTILCPREILTNAGGXXXXXXXXXXXXXXTAPPVAQNQNPHQLN-PNAAV-TPPQHTPLXXXXXXXXXXXXXXXXXXXXEDASAVTLFSLLQLHMDGLGVARVWAECAEDGGFASTPAWTSGTAAVEEMDEEER---DAPELSVLMATSQDEGQGSQPD-----------------------------------------------------------------------KGENSRGEADGCLPDIPGLHQCQAHQTLSPVALMPDSRDLCHQSHAAQSAAAATEDPAALAVVPPCPMPSPDMHVLVFLKWMNPVSGRIAYLSHAVVTHRTLLRHMFVLVGGLVHRPPETLGAH----------METTPATWQ---------RCGQGMHRMIACPLPAQHLRGVARPRDNNRERPEEQA-------TLRDIGVENGQILTFYVEGMEAVVEGTYRGYLEELFHEACVMYYGQDSLQAAERARSLMCMDVEDEMVEEDCSQQYVGKSSSAGDQKNERMGKTGPSRGNTKKGVTAAGATTEDREGTAGALACFLAPPALANAALFSSRPRVRPR--RASPKYSTLKLEQVVNLFERFGYQSFRVRNVYYQHKHMNARQTMDYVIQGRHLGFCCDRCGATDFTGPRYKCCMCYDYDLCGSCQEHPQAAAHRYKYEHRGWRRENQFSEHSKNHRMQMILPVPYNLRSL 907

[Close]

BLAST of NO13G01320 vs. NCBI_GenBank
Match: CBJ29000.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.0 bits (271), Expect = 9.400e-20
Identity = 66/211 (31.28%), Postives = 90/211 (42.65%), Query Frame = 0

Query:  852 TLKDLRLENGQILCFFLVGQEGEVQRAYQNLAHALLTEAASVVDWTGPTAKVEERRCPLSIMLQQPRPSSLPVSLSADASLCVRPRGSRLRPRLLLDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEY-SLGRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQAC--RQLPVETHRYRFQGRAWAKEE-YQGHREGHAMVCLQPIPA 1059
            TL+   L +G  +CFF  G    V+R Y      L+ E   ++   GP  +V                                         + +  V ++ E LG Q FR R  + +  H N RETLEY + GR L F CD CG  DF GPR+ C  C DYDLC  C  ++ P   HRY F    W +E  +QGH + H +  +  +PA
Sbjct:  842 TLERAGLSSGTSICFFRAGDRPAVRRTYNAAVEGLVEEMNMLLRGEGPLGRVH---------------------------------------LIKMAEVVEICESLGYQGFRTRIAYDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCHQCNAKKEPAPRHRYLFANGHWKREAGFQGHTDDHELEEIFTVPA 1013

[Close]

BLAST of NO13G01320 vs. NCBI_GenBank
Match: GAX99310.1 (ubiquitin carboxyl-terminal hydrolase and/or F-box protein, putative [Pythium insidiosum])

HSP 1 Score: 95.5 bits (236), Expect = 1.100e-15
Identity = 54/120 (45.00%), Postives = 67/120 (55.83%), Query Frame = 0

Query:  950 VADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACR-QLPVETHRYRFQGRAWAK-EEYQGHREGHAMVCLQPI---PATVAML 1064
            +  + E+L   +FRVR+  F     + R+TL Y + GRHLGF CD CG  DFKGPRF C IC DYDLCQ+C  Q    THRY      W +   +Q H+  H M  L P+   P TV  L
Sbjct:  364 IESMAERLDIPKFRVRSA-FRKCREDGRQTLRYIMEGRHLGFICDCCGETDFKGPRFNCTICNDYDLCQSCHDQSHQVTHRYANVDGKWQRIYNFQDHKSTHLMKRLLPVFYKPPTVQPL 482

[Close]

BLAST of NO13G01320 vs. NCBI_GenBank
Match: POM65926.1 (Ubiquitin carboxyl-terminal hydrolase and/or F-box protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 89.0 bits (219), Expect = 1.000e-13
Identity = 49/113 (43.36%), Postives = 63/113 (55.75%), Query Frame = 0

Query:  947 LDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVE-THRYRFQGRAWAK-EEYQGHREGHAMVCLQPI 1057
            L+ V +L EKL   +FRVR+  F   H +A  TL Y + GRHLGF CD CG  DF G RF C +C DYDLC AC     E +HRY      W +   ++ H+  H M  + P+
Sbjct:  586 LEHVENLAEKLDIPKFRVRSA-FRKCHEDALATLRYIMDGRHLGFICDSCGETDFTGARFNCVVCNDYDLCAACNAQSCEISHRYANVDGKWQRVYNFKDHKILHTMRKMLPV 697

[Close]

BLAST of NO13G01320 vs. NCBI_GenBank
Match: ETI43539.1 (hypothetical protein F443_11552 [Phytophthora parasitica P1569] >ETK83573.1 hypothetical protein L915_11238 [Phytophthora parasitica] >ETL90157.1 hypothetical protein L917_11039 [Phytophthora parasitica] >ETM43452.1 hypothetical protein L914_11072 [Phytophthora parasitica] >ETO72166.1 hypothetical protein F444_11622 [Phytophthora parasitica P1976] >ETP13314.1 hypothetical protein F441_11465 [Phytophthora parasitica CJ01A1] >ETP41383.1 hypothetical protein F442_11447 [Phytophthora parasitica P10297])

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-13
Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 0

Query:  947 LDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVE-THRYRFQGRAWAK-EEYQGHREGHAMVCLQPI 1057
            L+ V  L EKL   +FRVR+  F   H +A  TL Y + GRHLGF CD CG  DF G RF C +C DYDLC +C     E +HRY      W +   ++ H   H M  + P+
Sbjct:  597 LEQVEKLAEKLDIPKFRVRSA-FRRCHEDALATLRYIMEGRHLGFICDSCGETDFTGARFNCAVCNDYDLCASCNVQSCEISHRYANVDGKWQRVYNFKDHNTKHTMRKMLPV 708

[Close]

BLAST of NO13G01320 vs. NCBI_GenBank
Match: ETI43541.1 (hypothetical protein, variant 2 [Phytophthora parasitica P1569] >ETK83575.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETL90159.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETM43454.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETO72168.1 hypothetical protein, variant 2 [Phytophthora parasitica P1976] >ETP13316.1 hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >ETP41385.1 hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-13
Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 0

Query:  947 LDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVE-THRYRFQGRAWAK-EEYQGHREGHAMVCLQPI 1057
            L+ V  L EKL   +FRVR+  F   H +A  TL Y + GRHLGF CD CG  DF G RF C +C DYDLC +C     E +HRY      W +   ++ H   H M  + P+
Sbjct:  576 LEQVEKLAEKLDIPKFRVRSA-FRRCHEDALATLRYIMEGRHLGFICDSCGETDFTGARFNCAVCNDYDLCASCNVQSCEISHRYANVDGKWQRVYNFKDHNTKHTMRKMLPV 687

The following BLAST results are available for this feature:

BLAST of NO13G01320 vs. NCBI_GenBank

BLAST of NO13G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM21786.1	1.400e-217	42.98	ubiquitin carboxyl-terminal hydrolase [Nannochloro...	[more]
XP_005856087.1	5.000e-114	51.22	ubiquitin carboxyl-terminal hydrolase and or f-box...	[more]
XP_005856088.1	1.700e-93	49.35	ubiquitin carboxyl-terminal hydrolase and or f-box...	[more]
EWM24043.1	6.900e-47	22.82	potassium channel modulatory factor 1 [Nannochloro...	[more]
XP_005854280.1	4.500e-38	22.46	potassium channel modulatory factor 1 [Nannochloro...	[more]
CBJ29000.1	9.400e-20	31.28	conserved unknown protein [Ectocarpus siliculosus]	[more]
GAX99310.1	1.100e-15	45.00	ubiquitin carboxyl-terminal hydrolase and/or F-box...	[more]
POM65926.1	1.000e-13	43.36	Ubiquitin carboxyl-terminal hydrolase and/or F-box...	[more]
ETI43539.1	1.300e-13	42.48	hypothetical protein F443_11552 [Phytophthora para...	[more]
ETI43541.1	1.300e-13	42.48	hypothetical protein, variant 2 [Phytophthora para...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL134	nonsL134	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR026	ncniR026	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR070	ngnoR070	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK001764	NSK001764	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO13G01320.1	NO13G01320.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596635	gene_6877	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100065g16	gene8634	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO13G01320.1	NO13G01320.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO13G01320 ID=NO13G01320|Name=NO13G01320|organism=Nannochloropsis oceanica|type=gene|length=3369bp
ATGGCCACGCCTTTGGGCCCGTCCTTTTCCCAGATCGAGACTACCGCCGC
TGCTCGTTCACCGCCTCCCGGGACAACCGTACGCCCCTCAAGCCGCAGCG
GCTCTAACGATGCGTCCCTTGGTTCATCTCTTCGACTCCCCACAGGCGTG
ATTCACTCGGTCCTCTCTCACCTGGAGGCTCGCGACCTCAGCACTTCCGC
GCAAGTCTGCTGCGAGCTCTACGAGTGCTGCGACCATCCTGCCCTATGGG
AAGCTGCCGGGCAAGTCACATACCCCCACGCCGAAAAGCTTGGAGCCCTC
CAACTTTACAACGGAGAATGGAAAACGCTGCTCCGCGATCAGAACCGGCG
GGATCGTTCCACCCTCTTCGAATGGGAAGTCACCGACTGCCTGACCAACA
CCGCCCGCCGCTTTTCCCCCACCTTCCTCCTGGGCGATTACACCTTCCAA
CTAATCGTCGATCCCAACGGCAACCCCTACGTACCCCTCGCCAAGCCCGG
CGTCTCGGTCTATCTAACCTGCTGCCCTACCCAGTACGTCCGCGGCCTCT
CCCCCTCTGGACGCCTGTGCATGGATCCCATGGCCGACTACCTCCCCAAC
ATCCACAGCGCAAATGGCCTGCCTCCTATCGACACATGGGAATGCTGCGT
GGCCTTCGCTTTGGCAGTGGTCAACCAAACGGGCGCTCGGCgtaacttac
cgtgagtatcgaacctgctccacgatcggtttaaacccaattgccgtgaa
tggggggtgcatcgcctcgtctccctccgccgcttacaagAACATGCCAA
CGGCTATCTATCCGAGAAGGGATCCATCAAAGTCCAGGCCCATTTGCGTC
TGGCGTGTTTGTCGTTGAAACTGTTCACGTCGGACGCAATGAAGGGGTAT
CGAGGGTTTGGCCTGGCTGAGTTCAGCAATGCGGCTCTCACGGCAAGGGG
GGGGAAGGTTAGGTCGTGCTTAAGCCCTCCCCCCCCGCCTCCTCCTTTGG
TACCCGCGGAGCAGCCGCAGGTGGCGTTTACGGCGGCGGTTGACATAGAA
GGGTTAGGAGATGGAGAAGGAGGATTGGGAGGGGTGATAATGGAGATGGA
GGAGGGCATGGAAGAGGAGGGGGAGGAAAAGGAGGAAGAAGATGAAGACG
AGGAAGGGAGGGAAGAGGCGAAGGAGGAAGGGGAGGAGGACGAGTTGGAT
TTGAACCCCCTTCCTCTTCTTCCCCCTCCTCCTCCTCTTCTTTCGGCAGT
TGCCAACCCGTCCTCGTCCCCCGCGTCCTGGACGTGCGCACCCACCACTG
CTGTCGCCCCTCCCACTAAGGACACCGACAGCTCCAACCCCTCCCTCTCT
TCCTCCCTCGCTCCCACCCACCCACCACCATTCCGGGTCTACGAGGTCTT
TCAATGTATGACCGTCGCCGCCTTCCGCCGCCTCCTTGCCCGGGACCTGC
TCCCGCCCTCCTTGACTTTTTCCTCTTCCTCCTCCCTCCGCCTCTGGACT
GTCACCCAACCATGGGCGGACTTGCCCGCTGCTCCCCGCGAGCTTGTTCG
TAGCCTCCCTCCCTCCGACCATCCCTCCCTGCCTGAGGACTTGGACTGGG
CAGAGGCCTCGATTGAGACATTGGAAGAGCACCAGACGCTCGCTATGGCT
CTAGATGCACATGTGGATAGCGTGGGCGAGGCGAGGGTGTGGGTGGAGAT
TGCTGGGGATGGTGGGCTGAAATCAGCGACAGGAGGAGGGAAAGCAAGGG
CGGGATTGGTGAGGGTGGGGAAGGAGGAGGCGCTTGAAGTAACTCCCCCG
GGGTTGAGGATGTTGCCTGACCCTTTGGAACCCGCGGGGCACACGGAGTG
GCGTGAATTGGCAGCAGCAGCTCCACCACCACCACCACCAGTAGTAGAAG
CAGCGGAAGTGGTGGCAGCACCAGTCGGGGGTATGCATGAGGGAGGGGGA
CAGCAGCAGCAGCAAGAGGAGCCGGTGATGCAGCATGAGCAGCAGCCGCT
GCTGCCGATGATGATGGATGAAGTTGACGAGGAGGACGACGACGTGGAGG
ACGGCGAGGACGATCTGTTAGGCGACGACCAGGATCATGCCCCTCCTCCT
TCTCCTTCTCCTCCTCCTCCTCCTTTGGGTGCTGACAGTGCTGTCGATGT
CGCTCTACAGCAGGTCGAGGAGCAGGAGCAGGAGCAGGAGCCTCCTTACT
CCATCCTCCTCTTCCTGAAGTGTCTAGTCCCTTCTGGACATGACACGAAT
ACCACCACTACTACCACCCACGGCACCACCACCACCACCATCACTCTTGA
CGGTAGCAGCAGCAGCAGTAGCAGTGAATCTTCCATCGAGTTTTGGGCAC
ATGCCCTCCTTCCCATCACTACGCCCATTAAATTCCTCTTGGATTATATG
TCCAAAGAGGCACTGCCTGAGGAGGAGGGAGGGAGGGAGGGAGGAGGGAA
GGGGCTTCGGATTGTCGTCGAGACACCACCGACGAACTGGCAGTCTCCTG
CATTGAGTGATGGAGAGGGAAACGGAGGGCGTGGGGTGGAGCGAGTGGGG
GGTGGAAGTACGGCGGCACTTGACCGGCAGGATTGTCAGAAGCATGAGGA
ATACGAAAGGGGAGGATCGCATTTCCGGTGCTTGGACTATCACCCGACCA
AAACTCTCAAAGATCTTCGGCTCGAAAATGGACAGATTCTGTGTTTCTTT
CTGGTGGGACAGGAAGGGGAAGTGCAACGGGCATATCAGAATCTCGCGCA
TGCCTTGCTAACGGAAGCAGCCTCAGTCGTTGATTGGACGGGCCCAACCG
CCAAGGTTGAGGAAAGACGCTGTCCGCTTTCCATTATGCTGCAGCAACCC
CGCCCTTCCTCCCTCCCTGTGTCCCTCTCGGCCGATGCCTCGCTCTGTGT
TCGTCCCCGAGGCTCCCGTCTCCGCCCTCGTCTTCTTCTTGACACAGTGG
CTGACTTGTTTGAAAAGTTGGGGACTCAACGCTTCCGTGTCCGCAACACG
TTTTTCGAACATGCCCATACCAATGCACGGGAAACGCTGGAGTACAGTTT
GGGAAGGCATTTGGGGTTTTGTTGCGATCGGTGTGGTTGTTTAGATTTCA
AGGGCCCACGGTTTAAATGTTGTATATGCCAGGATTATGACTTGTGTCAG
GCCTGTCGCCAGCTGCCGGTGGAGACGCACCGGTACCGGTTTCAGGGCCG
GGCATGGGCGAAGGAGGAGTATCAAGGACATAGAGAAGGGCATGCCATGG
TGTGCTTGCAACCTATACCGGCGACGGTGGCCATGTTGAAAAGTTTTCGT
GTAAGGGAGGAGGAGGAAAGGAAGGAGGAGAGGAAGGTCGGAGAGGATGG
GGGAGAGATGATGGATTAG

protein sequence of NO13G01320.1

>NO13G01320.1-protein ID=NO13G01320.1-protein|Name=NO13G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1090bp
MATPLGPSFSQIETTAAARSPPPGTTVRPSSRSGSNDASLGSSLRLPTGV
IHSVLSHLEARDLSTSAQVCCELYECCDHPALWEAAGQVTYPHAEKLGAL
QLYNGEWKTLLRDQNRRDRSTLFEWEVTDCLTNTARRFSPTFLLGDYTFQ
LIVDPNGNPYVPLAKPGVSVYLTCCPTQYVRGLSPSGRLCMDPMADYLPN
IHSANGLPPIDTWECCVAFALAVVNQTGARQHANGYLSEKGSIKVQAHLR
LACLSLKLFTSDAMKGYRGFGLAEFSNAALTARGGKVRSCLSPPPPPPPL
VPAEQPQVAFTAAVDIEGLGDGEGGLGGVIMEMEEGMEEEGEEKEEEDED
EEGREEAKEEGEEDELDLNPLPLLPPPPPLLSAVANPSSSPASWTCAPTT
AVAPPTKDTDSSNPSLSSSLAPTHPPPFRVYEVFQCMTVAAFRRLLARDL
LPPSLTFSSSSSLRLWTVTQPWADLPAAPRELVRSLPPSDHPSLPEDLDW
AEASIETLEEHQTLAMALDAHVDSVGEARVWVEIAGDGGLKSATGGGKAR
AGLVRVGKEEALEVTPPGLRMLPDPLEPAGHTEWRELAAAAPPPPPPVVE
AAEVVAAPVGGMHEGGGQQQQQEEPVMQHEQQPLLPMMMDEVDEEDDDVE
DGEDDLLGDDQDHAPPPSPSPPPPPLGADSAVDVALQQVEEQEQEQEPPY
SILLFLKCLVPSGHDTNTTTTTTHGTTTTTITLDGSSSSSSSESSIEFWA
HALLPITTPIKFLLDYMSKEALPEEEGGREGGGKGLRIVVETPPTNWQSP
ALSDGEGNGGRGVERVGGGSTAALDRQDCQKHEEYERGGSHFRCLDYHPT
KTLKDLRLENGQILCFFLVGQEGEVQRAYQNLAHALLTEAASVVDWTGPT
AKVEERRCPLSIMLQQPRPSSLPVSLSADASLCVRPRGSRLRPRLLLDTV
ADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSLGRHLGFCCDRCGCLDF
KGPRFKCCICQDYDLCQACRQLPVETHRYRFQGRAWAKEEYQGHREGHAM
VCLQPIPATVAMLKSFRVREEEERKEERKVGEDGGEMMD*

Synonyms

Publications