NO13G01080, NO13G01080 (gene) Nannochloropsis oceanica

Overview
NameNO13G01080
Unique NameNO13G01080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length786
Alignment locationchr13:342091..342876 +

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Properties
Property NameValue
DescriptionDIX domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:342091..342876 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR001158DIX
Homology
[Close]
BLAST of NO13G01080 vs. NCBI_GenBank
Match: GAX98835.1 (Hypothetical protein PINS_006709 [Pythium insidiosum])

HSP 1 Score: 81.6 bits (200), Expect = 3.900e-12
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 0 
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKPTAAGRTGFPS 105
            M+ Y+IP DGD + H N+  LP   +    L+ ++++FPLPG +HFRFK   EGT     VW D+T D   +P  +G I++K++R+  + + +P     T  PS
Sbjct:    4 MLNYFIPEDGDTSDHMNVVPLPRVEQ--LKLQHIKKSFPLPGDFHFRFKTAFEGT----YVWLDVTNDADPVPDYNGLIVSKIARVQRESTTRPPERVETSVPS 101
[Close]
BLAST of NO13G01080 vs. NCBI_GenBank
Match: GBG28488.1 (Hypothetical Protein FCC1311_047112 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 81.3 bits (199), Expect = 5.000e-12
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 0 
Query:    2 IRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLS 88
            + Y++P DGDD  HPN F L   A       DVR  FPLPGAYH RFKK  +    N  VW D+ +D   +P  +G I AK+SRLS
Sbjct:    6 VYYFVPEDGDDEAHPNFFSLSKPAAK-VRAADVRAAFPLPGAYHLRFKKAFK----NTYVWLDVVDDGQIVPRFEGQIFAKISRLS 86
[Close]
BLAST of NO13G01080 vs. NCBI_GenBank
Match: XP_008861767.1 (hypothetical protein H310_00678 [Aphanomyces invadans] >ETW10356.1 hypothetical protein H310_00678 [Aphanomyces invadans])

HSP 1 Score: 80.5 bits (197), Expect = 8.600e-12
Identity = 39/97 (40.21%), Postives = 62/97 (63.92%), Query Frame = 0 
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLS-MDVSAKPTA 97
            MI Y+IP DGD   H N+F +P   ++   L  +++ FP+PG +HFRFK+  EGT     VW D+ +D   +P  +G I++K+SR+S ++V A+ T+
Sbjct:    4 MINYFIPDDGDTPDHLNVFPIPSQHKSNLKLAHIKKEFPIPGKFHFRFKQAFEGT----YVWLDVNDDD-PVPDFNGLIISKISRISDVEVPAQHTS 95
[Close]
BLAST of NO13G01080 vs. NCBI_GenBank
Match: XP_008861768.1 (hypothetical protein, variant [Aphanomyces invadans] >ETW10357.1 hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 80.5 bits (197), Expect = 8.600e-12
Identity = 39/97 (40.21%), Postives = 62/97 (63.92%), Query Frame = 0 
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLS-MDVSAKPTA 97
            MI Y+IP DGD   H N+F +P   ++   L  +++ FP+PG +HFRFK+  EGT     VW D+ +D   +P  +G I++K+SR+S ++V A+ T+
Sbjct:    4 MINYFIPDDGDTPDHLNVFPIPSQHKSNLKLAHIKKEFPIPGKFHFRFKQAFEGT----YVWLDVNDDD-PVPDFNGLIISKISRISDVEVPAQHTS 95
[Close]
BLAST of NO13G01080 vs. NCBI_GenBank
Match: XP_002179185.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49008.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-11
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 0 
Query:    2 IRYYIPGDGDDATHPNIFHLPPSARN---PPTLRDVRQNFPLPGAYHFRFKKRLEGTPD----NKPVWFDITEDTAEIPVCDGTILAKVSRLSMD 90
            IRY+IP DGD    PN+F L P  R    PPTL  ++Q  P+PG YHFRFK  L    D    +  VW D  +D   +PV   TI+AK++R+ ++
Sbjct:    4 IRYFIPEDGDSELQPNVF-LAPKPRQPGYPPTLGQIKQALPVPGRYHFRFKSPLVPGADRDKTSMAVWMDCVDDRQAVPVWRSTIVAKLTRIGVE 97
[Close]
BLAST of NO13G01080 vs. NCBI_GenBank
Match: XP_009526624.1 (hypothetical protein PHYSODRAFT_285950 [Phytophthora sojae] >EGZ17566.1 hypothetical protein PHYSODRAFT_285950 [Phytophthora sojae])

HSP 1 Score: 78.6 bits (192), Expect = 3.300e-11
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 0 
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKP 95
            M+ Y++P DGD + H N+  LP    +   L+ V+++FPLPG +HFRFK   EGT     VW D+  D   +P  +G ++ K+SR+  + S +P
Sbjct:    4 MLNYFVPEDGDSSDHLNVVPLP--RVDQLRLQHVKKSFPLPGDFHFRFKTAFEGT----YVWLDVVNDADPVPDFNGLVICKISRMQRESSTRP 91
[Close]
BLAST of NO13G01080 vs. NCBI_GenBank
Match: XP_008892786.1 (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETI45749.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK85698.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL39127.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL92240.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM45545.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETN20939.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETO74391.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP15572.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP43635.1 hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 78.6 bits (192), Expect = 3.300e-11
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 0 
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKP 95
            M+ Y++P DGD + H N+  LP   +    L+ V+++FPLPG +HFRFK   EGT     VW D+  D   +P  +G ++ K+SR+  + S +P
Sbjct:    4 MLNYFVPEDGDSSDHLNVVPLPRVEQ--LRLQHVKKSFPLPGDFHFRFKTAFEGT----YVWLDVVNDADPVPDFNGLVICKISRVQRESSTRP 91
[Close]
BLAST of NO13G01080 vs. NCBI_GenBank
Match: XP_008892787.1 (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >ETI45750.1 hypothetical protein, variant 2 [Phytophthora parasitica P1569] >ETK85699.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETL39128.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETL92241.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETM45546.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETN20940.1 hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >ETO74392.1 hypothetical protein, variant 2 [Phytophthora parasitica P1976] >ETP15573.1 hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >ETP43636.1 hypothetical protein, variant 2 [Phytophthora parasitica P10297] >KUF82331.1 hypothetical protein AM587_10007432 [Phytophthora nicotianae])

HSP 1 Score: 78.6 bits (192), Expect = 3.300e-11
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 0 
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKP 95
            M+ Y++P DGD + H N+  LP   +    L+ V+++FPLPG +HFRFK   EGT     VW D+  D   +P  +G ++ K+SR+  + S +P
Sbjct:    4 MLNYFVPEDGDSSDHLNVVPLPRVEQ--LRLQHVKKSFPLPGDFHFRFKTAFEGT----YVWLDVVNDADPVPDFNGLVICKISRVQRESSTRP 91
[Close]
BLAST of NO13G01080 vs. NCBI_GenBank
Match: GAX27301.1 (hypothetical protein FisN_23Lh130 [Fistulifera solaris])

HSP 1 Score: 78.6 bits (192), Expect = 3.300e-11
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 0 
Query:    2 IRYYIPGDGDDATHPNIFHLPP--SARNPPTLRDVRQNFPLPGAYHFRFKKRL-EGTPDNK---PVWFDITEDTAEIPVCDGTILAKVSRLSM 89
            +RY+IP DGD  + PN+F  P    A  PP+L +++  FPL G+YHFRFK  L  GT   K   PVW D  +D   +P     ++AKV+R+++
Sbjct:    4 VRYFIPEDGDLESQPNVFLAPKPRQAGYPPSLGEIKNAFPLSGSYHFRFKSPLIPGTDREKGAMPVWMDCVDDRQPVPTWKNQVIAKVTRIAV 96
[Close]
BLAST of NO13G01080 vs. NCBI_GenBank
Match: XP_002899653.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY62013.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 77.8 bits (190), Expect = 5.600e-11
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 0 
Query:    1 MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKKRLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKP 95
            M+ Y++P DGD + H N+  LP    +   L+ V+++FPLPG +HFRFK   EGT     VW D+  D   +P  +G ++ K+SR+  + S +P
Sbjct:    1 MLNYFVPEDGDSSDHLNVVPLP--RVDQLRLQHVKKSFPLPGDFHFRFKTAFEGT----YVWLDVVNDADPVPDFNGLVVCKISRVQRESSTRP 88
The following BLAST results are available for this feature:
BLAST of NO13G01080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX98835.13.900e-1237.50Hypothetical protein PINS_006709 [Pythium insidios... [more]
GBG28488.15.000e-1247.67Hypothetical Protein FCC1311_047112 [Aurantiochytr... [more]
XP_008861767.18.600e-1240.21hypothetical protein H310_00678 [Aphanomyces invad... [more]
XP_008861768.18.600e-1240.21hypothetical protein, variant [Aphanomyces invadan... [more]
XP_002179185.11.100e-1143.16predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_009526624.13.300e-1138.30hypothetical protein PHYSODRAFT_285950 [Phytophtho... [more]
XP_008892786.13.300e-1138.30hypothetical protein, variant 1 [Phytophthora para... [more]
XP_008892787.13.300e-1138.30hypothetical protein, variant 2 [Phytophthora para... [more]
GAX27301.13.300e-1141.94hypothetical protein FisN_23Lh130 [Fistulifera sol... [more]
XP_002899653.15.600e-1138.30conserved hypothetical protein [Phytophthora infes... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001786NSK001786Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01080.1NO13G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100188g5gene8653Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01080.1NO13G01080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01080 ID=NO13G01080|Name=NO13G01080|organism=Nannochloropsis oceanica|type=gene|length=786bp
ATGATCCGGTACTACATCCCGGGCGACGGGGACGACGCGACCCACCCCAA
CATCTTCCATCTACCACCTTCTGCCCGCAACCCCCCCACGCTCCGCGATG
TCCGCCAGAACTTCCCTCTACCGGGCGCGTACCATTTCCGATTCAAGAAG
CGTTTGGAGGGCACCCCAGATAACAAACCCGTTTGGTTTGACATTACGGA
AGACACCGCGGAGATCCCTGTGTGTGATGGCACCATCCTCGCCAAAGTCT
CGAGATTGAGTATGGATGTTTCAGCTAAGCCTACCGCCGCGGGGAGAACA
GGCTTCCCCTCTTCTTCCTCCACTTCCCCATCGTCTTCCTCACATTCCAA
CTCTGGGACCTCCTCCTCACCAACCACGCAATCTGCCGCGTCGCCTGTCT
CGAGGGCCACACCGCCTACAGGCGGCAGCAGTAGCAGCAGCCGACACTTG
CCGACCCCTCCCGACAGTGACCCCTTCGGTTTGTTTCACGAAGCTCCCAC
GGCACCGACGGGTGGTGGTGGAGTCCAGCGAAACGTCAGTGCGCCCATGA
GCAACAACGGCCACTCCCCGTCAATGTCCATGCAAAGACCGCAAGGCGGG
GGAGGAGGAGGAGGAGGAGGGAAAGCAGACTTACTCGATTTCGATGCTTT
TGGGAGTCATCCCCCTGCTGCTCCTCAAAAGCGGCCCATGTCTGGGACTC
CTCCTCCTCCTCATCATCATCATCAGCAGCAGCAGCCGCCGCCAAGGGGC
TACCCGCCTTCGTCGTCGGGGGGTGGGTGGATGTGA
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protein sequence of NO13G01080.1

>NO13G01080.1-protein ID=NO13G01080.1-protein|Name=NO13G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKK
RLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKPTAAGRT
GFPSSSSTSPSSSSHSNSGTSSSPTTQSAASPVSRATPPTGGSSSSSRHL
PTPPDSDPFGLFHEAPTAPTGGGGVQRNVSAPMSNNGHSPSMSMQRPQGG
GGGGGGGKADLLDFDAFGSHPPAAPQKRPMSGTPPPPHHHHQQQQPPPRG
YPPSSSGGGWM*
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Synonyms
Publications