NO13G00770, NO13G00770 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_104388584.1 (photosystem II S4 domain protein [Cuspidothrix issatschenkoi] >PPJ62541.1 photosystem II S4 domain protein [Cuspidothrix issatschenkoi CHARLIE-1]) HSP 1 Score: 261.5 bits (667), Expect = 3.500e-66 Identity = 137/270 (50.74%), Postives = 191/270 (70.74%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL K GVE+ AR ++ AD+A+ WE+ + +F PPE+A I+RV R+ ++ + P GG+PQAERQR+ AR+ + LDQ E ++ + GNF+FD A+HRDFLGA+LGTGI REK GD+++ GERGA VI+ PE+ E++ +L VRSVPVK + I + EL +R P KE+ +VEAS+RLDA+ASAG GMSRSK+ D+I+S DV VNWKE A+S +K GD++ IRGKGRLEV E+ T K ++RV++T+++ Sbjct: 2 LPREELLK-----GVENRDTIARVIDQADQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVHLLPWGGYPQAERQRIAIARS-ELPLDQS------EVALVALEIAGNFLFDTANHRDFLGAMLGTGIVREKTGDVIVLGERGAQVIVVPELVEFLEMSLKQVRSVPVKTQPIDINELKIREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDLIDSNDVRVNWKEVTQASSQVKKGDLIAIRGKGRLEVGEIAVTKKDRYRVQLTRYM 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_011317862.1 (photosystem II S4 domain protein [Trichormus variabilis] >ABA20636.1 RNA-binding S4 [Trichormus variabilis ATCC 29413]) HSP 1 Score: 261.2 bits (666), Expect = 4.600e-66 Identity = 141/270 (52.22%), Postives = 188/270 (69.63%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL K GVE+ AR ++ A++A+ WE+ V +F PPE+A I+RV R+ D+ + GG+PQAERQR+ AR + LDQ Q + + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA I+ PE+AE++ L VRSVPVK + I L EL VR P KE+ +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWKE A+S +K GD++ IRGKGRLEV E+ T K ++RV++T+++ Sbjct: 2 LPREELLK-----GVENRDSVARVIDQAEQAIKTWEVVVTDFFSPPELAEIQRVFSRLTDVQLVAWGGYPQAERQRLAIAR-AELPLDQSQ------VSLVVLEIAGNFLFDSATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQPIELAELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEIAVTKKERYRVQLTRYM 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_099532766.1 (photosystem II S4 domain protein [Limnothrix sp. PR1529] >OCQ91917.1 photosystem II S4 domain protein [Limnothrix sp. P13C2] >PIB14224.1 RNA-binding protein [Limnothrix sp. PR1529]) HSP 1 Score: 261.2 bits (666), Expect = 4.600e-66 Identity = 136/263 (51.71%), Postives = 184/263 (69.96%), Query Frame = 0 Query: 74 RKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 R++L+ ARA++ AD++L WE V +F PPE+A I+ V +A++ P GG+PQAERQRV FAR+ EL + E ++ + GNF+FD A+HRDFLGALLGTG+ R+KVGD+L+QGERGA ++APEV E++ L VRSVPVK +AIPL EL VR P KEM +VEAS+RLDA+ASAG G+SRSK+ + I GDV VNWK+ S + LLK GD+V + GKGRL + E+ TT K ++RV++T+F+ Sbjct: 4 RETLLKRATHRETIARAIDLADQSLKTWEPAVSDFLSPPEIADIQTVFSGLAEVVFMPWGGYPQAERQRVAFARS---ELPLITDAIE----VAALEIAGNFLFDPATHRDFLGALLGTGLVRDKVGDLLVQGERGAQALVAPEVVEFLELNLTQVRSVPVKTRAIPLSELKVREPKKKEMTTVEASLRLDAIASAGFGISRSKMAEAISGGDVRVNWKDITSPSHLLKSGDLVVLAGKGRLSIGEIATTKKDRYRVQLTRFV 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_096641760.1 (photosystem II S4 domain protein [Calothrix brevissima] >BAY60157.1 RNA-binding S4 [Calothrix brevissima NIES-22]) HSP 1 Score: 261.2 bits (666), Expect = 4.600e-66 Identity = 139/269 (51.67%), Postives = 188/269 (69.89%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL K++ + AR ++ A +A+ WE+ + +F PPE+A I+RV R+ ++ + GG+PQAERQR+ AR + LDQ Q + + GNF+FD A+HRDFLGA+LGTGI R+K GDI++ GERGA VI+APE+AE++ L VRSVPVK + I L EL VR P KEM +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWKE A+S +K GD++ IRGKGRLEV EV T K ++RV++T+++ Sbjct: 2 LPREELLKTVENRDI----VARVIDRAQEAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLLAWGGYPQAERQRLAIAR-AEIPLDQSQ------VALVLLEIAGNFLFDTATHRDFLGAMLGTGIVRDKTGDIVVLGERGAQVIVAPELAEFLEMNLQQVRSVPVKTQRIDLSELKVREPKKKEMTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVSQASSQVKTGDLIAIRGKGRLEVGEVAVTKKDRYRVQLTRYM 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_104909074.1 (photosystem II S4 domain protein [Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont'] >AVH73610.1 photosystem II S4 domain protein [Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont']) HSP 1 Score: 261.2 bits (666), Expect = 4.600e-66 Identity = 139/270 (51.48%), Postives = 190/270 (70.37%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL K GVE+ ARA++ A++A+ WE+ + +F PPE+A I+RV R+ ++ + GG+PQAERQR+ AR+ + LDQ Q +V + GNF+FD ASHRDFLGA+LGTGI REK GD+++ GERGA I+APE+ E++ +L VRSVPVK + I L EL VR P KE+ +VEAS+RLDA+ASAG GMSRSK+ D I++GDV VNWKE A+S +K GD++ IR KGRLEV E+ T K ++RV++T+++ Sbjct: 2 LPREELLK-----GVENRDSVARAIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFNRLTEVQLVAWGGYPQAERQRIAIARS-ELPLDQSQ------VSLVAVEIAGNFLFDTASHRDFLGAMLGTGIVREKTGDVIVLGERGAQAIVAPELVEFLSMSLKQVRSVPVKTQQIELTELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDFIDAGDVRVNWKEVTQASSQVKSGDLIAIRSKGRLEVGEIAVTKKERYRVQLTRYM 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_015140008.1 (photosystem II S4 domain protein [Nostoc sp. PCC 7524] >AFY49585.1 photosystem II S4 domain protein [Nostoc sp. PCC 7524]) HSP 1 Score: 260.8 bits (665), Expect = 6.000e-66 Identity = 140/269 (52.04%), Postives = 189/269 (70.26%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL K + E + I AR ++ A++A+ WE+ + +F PPE+A I+RV R+ +L + GG+PQAERQRV AR+ + LDQ Q + + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA I+ PE+AE++ L VRSVPVK + I L EL VR P KE+ +VEAS+RLDA+ASAG GMSRSK+ D+I++GDV VNWKE A+S +K GD++ IRGKGRLEV EV T K ++RV++T+++ Sbjct: 2 LPREELLKGV--ENRDSI--ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTELQLVAWGGYPQAERQRVAIARS-ELPLDQSQ------VNLVLLEIAGNFLFDPATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAEFLTMNLQQVRSVPVKTQQIDLSELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDLIDAGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEVAVTKKERYRVQLTRYM 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: OBQ12807.1 (RNA-binding protein [Anabaena sp. LE011-02]) HSP 1 Score: 260.8 bits (665), Expect = 6.000e-66 Identity = 140/270 (51.85%), Postives = 187/270 (69.26%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL K GVE AR ++ AD+A+ WE+ +F PPE+A I+RV R+ ++ GG+PQAERQR+ AR VD LDQ E ++ + GNF+FD A+HRDFLGA+LGTGI REK GD+++ GERGA VI+ PE+ E++ +L VRSVPVK + I + EL +R P KEM +VEAS+RLDAVASAG GMSRSK+ D+I+S DV VNWKE A+S +K GD++ IRGKGRLEV E+ T K ++RV++T+++ Sbjct: 2 LPREELLK-----GVEHRDTVARVIDQADQAIKTWEVVFTDFLSPPELAEIQRVFSRLTEVHSVAWGGYPQAERQRLAIAR-VDLPLDQS------EVAIVALDIAGNFLFDTANHRDFLGAMLGTGIVREKTGDVIVLGERGAQVIVVPELVEFLEMSLQQVRSVPVKTRRIEINELKIREPKKKEMTTVEASLRLDAVASAGFGMSRSKMVDLIDSNDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEIAVTKKDRYRVQLTRYM 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: OUC16055.1 (photosystem II S4 domain protein [Alkalinema sp. CACIAM 70d]) HSP 1 Score: 260.8 bits (665), Expect = 6.000e-66 Identity = 136/270 (50.37%), Postives = 190/270 (70.37%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L RE+L K GVE+ A+ ++ A++A+ WE+ +F PPE+A ++++ R+ D+ + GG+PQAERQRV AR+ + LDQ E + T++ + GNF+FD A+HRDFLGA+LGTGI R+KVGDI++ GERGA I+ PE+AE++ L VRSVPVK + IPL EL +R P KE+ +VEASMRLDA+ASAG GMSRSK+ D+I SGDV VNWKE S + +K GD++ +RGKGR+EV +V T K ++RV +T+F+ Sbjct: 2 LPREDLLK-----GVENRETVAQVIDRAEQAIKTWEVVQTDFLAPPELAEVQQIFSRLTDIHLLTWGGYPQAERQRVAIARS-EIPLDQ-----ETQVELTALEIAGNFLFDTATHRDFLGAMLGTGIVRDKVGDIIVLGERGAQAIVVPELAEFLAMQLTQVRSVPVKTRPIPLTELKIREPKKKELTTVEASMRLDAIASAGFGMSRSKMADLITSGDVRVNWKEISSTSHPVKSGDLIAVRGKGRVEVGDVAITKKDRYRVNLTRFV 260
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_010997041.1 (MULTISPECIES: photosystem II S4 domain protein [Nostocaceae] >BAB74589.1 alr2890 [Nostoc sp. PCC 7120] >BAY68515.1 hypothetical protein NIES23_13010 [Trichormus variabilis NIES-23]) HSP 1 Score: 260.4 bits (664), Expect = 7.800e-66 Identity = 141/270 (52.22%), Postives = 187/270 (69.26%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL K GVE+ AR ++ A++A+ WE+ V +F PPE+A I+RV R+ D+ + GG+PQAERQR+ AR + LDQ Q + + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA I+ PE+AE++ L VRSVPVK + I L EL VR P KE+ +VEAS+RLDA+ASAG GMSRSK+ D I+SGDV VNWKE A+S +K GD++ IRGKGRLEV E+ T K ++RV++T+++ Sbjct: 2 LPREELLK-----GVENRDSVARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLVAWGGYPQAERQRLAIAR-AELPLDQSQ------VSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQPIELTELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEIAVTKKERYRVQLTRYM 259
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_073642663.1 (photosystem II S4 domain protein [Nostoc calcicola] >OKH31930.1 photosystem II S4 domain protein [Nostoc calcicola FACHB-389]) HSP 1 Score: 260.4 bits (664), Expect = 7.800e-66 Identity = 139/270 (51.48%), Postives = 190/270 (70.37%), Query Frame = 0 Query: 68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337 L REEL K GVE+ AR ++ A++A+ WE+ V +F PPE+A I+RV R+ ++ + GG+PQAERQR+ AR+ + LD+ Q +V + GNF+FD ASHRDFLGA+LGTGI REK GDI++ GERGA I+APE+ E++ +L VRSVPVK + I + EL VR P KE+ +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWKE A+S +K GD++ IR KGRLEV E+ T K ++RV++T+++ Sbjct: 2 LPREELLK-----GVENRDSVARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTEVQLVVWGGYPQAERQRIAIARS-ELPLDRSQ------VSLVAVEIAGNFLFDTASHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVAPELVEFLEMSLKQVRSVPVKTQQIEITELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVTQASSQVKSGDLIAIRSKGRLEVGEIAVTKKDRYRVQLTRYM 259 The following BLAST results are available for this feature:
BLAST of NO13G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G00770 ID=NO13G00770|Name=NO13G00770|organism=Nannochloropsis oceanica|type=gene|length=2014bpback to top protein sequence of NO13G00770.1 >NO13G00770.1-protein ID=NO13G00770.1-protein|Name=NO13G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bpback to top protein sequence of NO13G00770.2 >NO13G00770.2-protein ID=NO13G00770.2-protein|Name=NO13G00770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=256bpback to top protein sequence of NO13G00770.3 >NO13G00770.3-protein ID=NO13G00770.3-protein|Name=NO13G00770.3|organism=Nannochloropsis oceanica|type=polypeptide|length=269bpback to top Synonyms
Publications
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