NO13G00770, NO13G00770 (gene) Nannochloropsis oceanica

Overview
NameNO13G00770
Unique NameNO13G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2014
Alignment locationchr13:254485..256498 +

Link to JBrowse

Properties
Property NameValue
DescriptionPhotosystem ii s4 domain protein, or rna-binding s4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:254485..256498 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_104388584.1 (photosystem II S4 domain protein [Cuspidothrix issatschenkoi] >PPJ62541.1 photosystem II S4 domain protein [Cuspidothrix issatschenkoi CHARLIE-1])

HSP 1 Score: 261.5 bits (667), Expect = 3.500e-66
Identity = 137/270 (50.74%), Postives = 191/270 (70.74%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL K     GVE+    AR ++ AD+A+  WE+ + +F  PPE+A I+RV  R+ ++ + P GG+PQAERQR+  AR+ +  LDQ       E    ++ + GNF+FD A+HRDFLGA+LGTGI REK GD+++ GERGA VI+ PE+ E++  +L  VRSVPVK + I + EL +R P  KE+ +VEAS+RLDA+ASAG GMSRSK+ D+I+S DV VNWKE   A+S +K GD++ IRGKGRLEV E+  T K ++RV++T+++
Sbjct:    2 LPREELLK-----GVENRDTIARVIDQADQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVHLLPWGGYPQAERQRIAIARS-ELPLDQS------EVALVALEIAGNFLFDTANHRDFLGAMLGTGIVREKTGDVIVLGERGAQVIVVPELVEFLEMSLKQVRSVPVKTQPIDINELKIREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDLIDSNDVRVNWKEVTQASSQVKKGDLIAIRGKGRLEVGEIAVTKKDRYRVQLTRYM 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_011317862.1 (photosystem II S4 domain protein [Trichormus variabilis] >ABA20636.1 RNA-binding S4 [Trichormus variabilis ATCC 29413])

HSP 1 Score: 261.2 bits (666), Expect = 4.600e-66
Identity = 141/270 (52.22%), Postives = 188/270 (69.63%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL K     GVE+    AR ++ A++A+  WE+ V +F  PPE+A I+RV  R+ D+ +   GG+PQAERQR+  AR  +  LDQ Q           + + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA  I+ PE+AE++   L  VRSVPVK + I L EL VR P  KE+ +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWKE   A+S +K GD++ IRGKGRLEV E+  T K ++RV++T+++
Sbjct:    2 LPREELLK-----GVENRDSVARVIDQAEQAIKTWEVVVTDFFSPPELAEIQRVFSRLTDVQLVAWGGYPQAERQRLAIAR-AELPLDQSQ------VSLVVLEIAGNFLFDSATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQPIELAELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEIAVTKKERYRVQLTRYM 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_099532766.1 (photosystem II S4 domain protein [Limnothrix sp. PR1529] >OCQ91917.1 photosystem II S4 domain protein [Limnothrix sp. P13C2] >PIB14224.1 RNA-binding protein [Limnothrix sp. PR1529])

HSP 1 Score: 261.2 bits (666), Expect = 4.600e-66
Identity = 136/263 (51.71%), Postives = 184/263 (69.96%), Query Frame = 0
Query:   74 RKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            R++L+         ARA++ AD++L  WE  V +F  PPE+A I+ V   +A++   P GG+PQAERQRV FAR+   EL    +  E      ++ + GNF+FD A+HRDFLGALLGTG+ R+KVGD+L+QGERGA  ++APEV E++   L  VRSVPVK +AIPL EL VR P  KEM +VEAS+RLDA+ASAG G+SRSK+ + I  GDV VNWK+  S + LLK GD+V + GKGRL + E+ TT K ++RV++T+F+
Sbjct:    4 RETLLKRATHRETIARAIDLADQSLKTWEPAVSDFLSPPEIADIQTVFSGLAEVVFMPWGGYPQAERQRVAFARS---ELPLITDAIE----VAALEIAGNFLFDPATHRDFLGALLGTGLVRDKVGDLLVQGERGAQALVAPEVVEFLELNLTQVRSVPVKTRAIPLSELKVREPKKKEMTTVEASLRLDAIASAGFGISRSKMAEAISGGDVRVNWKDITSPSHLLKSGDLVVLAGKGRLSIGEIATTKKDRYRVQLTRFV 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_096641760.1 (photosystem II S4 domain protein [Calothrix brevissima] >BAY60157.1 RNA-binding S4 [Calothrix brevissima NIES-22])

HSP 1 Score: 261.2 bits (666), Expect = 4.600e-66
Identity = 139/269 (51.67%), Postives = 188/269 (69.89%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL K++    +     AR ++ A +A+  WE+ + +F  PPE+A I+RV  R+ ++ +   GG+PQAERQR+  AR  +  LDQ Q           + + GNF+FD A+HRDFLGA+LGTGI R+K GDI++ GERGA VI+APE+AE++   L  VRSVPVK + I L EL VR P  KEM +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWKE   A+S +K GD++ IRGKGRLEV EV  T K ++RV++T+++
Sbjct:    2 LPREELLKTVENRDI----VARVIDRAQEAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLLAWGGYPQAERQRLAIAR-AEIPLDQSQ------VALVLLEIAGNFLFDTATHRDFLGAMLGTGIVRDKTGDIVVLGERGAQVIVAPELAEFLEMNLQQVRSVPVKTQRIDLSELKVREPKKKEMTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVSQASSQVKTGDLIAIRGKGRLEVGEVAVTKKDRYRVQLTRYM 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_104909074.1 (photosystem II S4 domain protein [Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont'] >AVH73610.1 photosystem II S4 domain protein [Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont'])

HSP 1 Score: 261.2 bits (666), Expect = 4.600e-66
Identity = 139/270 (51.48%), Postives = 190/270 (70.37%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL K     GVE+    ARA++ A++A+  WE+ + +F  PPE+A I+RV  R+ ++ +   GG+PQAERQR+  AR+ +  LDQ Q          +V + GNF+FD ASHRDFLGA+LGTGI REK GD+++ GERGA  I+APE+ E++  +L  VRSVPVK + I L EL VR P  KE+ +VEAS+RLDA+ASAG GMSRSK+ D I++GDV VNWKE   A+S +K GD++ IR KGRLEV E+  T K ++RV++T+++
Sbjct:    2 LPREELLK-----GVENRDSVARAIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFNRLTEVQLVAWGGYPQAERQRIAIARS-ELPLDQSQ------VSLVAVEIAGNFLFDTASHRDFLGAMLGTGIVREKTGDVIVLGERGAQAIVAPELVEFLSMSLKQVRSVPVKTQQIELTELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDFIDAGDVRVNWKEVTQASSQVKSGDLIAIRSKGRLEVGEIAVTKKERYRVQLTRYM 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_015140008.1 (photosystem II S4 domain protein [Nostoc sp. PCC 7524] >AFY49585.1 photosystem II S4 domain protein [Nostoc sp. PCC 7524])

HSP 1 Score: 260.8 bits (665), Expect = 6.000e-66
Identity = 140/269 (52.04%), Postives = 189/269 (70.26%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVEDILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL K +  E  + I  AR ++ A++A+  WE+ + +F  PPE+A I+RV  R+ +L +   GG+PQAERQRV  AR+ +  LDQ Q           + + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA  I+ PE+AE++   L  VRSVPVK + I L EL VR P  KE+ +VEAS+RLDA+ASAG GMSRSK+ D+I++GDV VNWKE   A+S +K GD++ IRGKGRLEV EV  T K ++RV++T+++
Sbjct:    2 LPREELLKGV--ENRDSI--ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTELQLVAWGGYPQAERQRVAIARS-ELPLDQSQ------VNLVLLEIAGNFLFDPATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAEFLTMNLQQVRSVPVKTQQIDLSELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDLIDAGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEVAVTKKERYRVQLTRYM 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: OBQ12807.1 (RNA-binding protein [Anabaena sp. LE011-02])

HSP 1 Score: 260.8 bits (665), Expect = 6.000e-66
Identity = 140/270 (51.85%), Postives = 187/270 (69.26%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL K     GVE     AR ++ AD+A+  WE+   +F  PPE+A I+RV  R+ ++     GG+PQAERQR+  AR VD  LDQ       E    ++ + GNF+FD A+HRDFLGA+LGTGI REK GD+++ GERGA VI+ PE+ E++  +L  VRSVPVK + I + EL +R P  KEM +VEAS+RLDAVASAG GMSRSK+ D+I+S DV VNWKE   A+S +K GD++ IRGKGRLEV E+  T K ++RV++T+++
Sbjct:    2 LPREELLK-----GVEHRDTVARVIDQADQAIKTWEVVFTDFLSPPELAEIQRVFSRLTEVHSVAWGGYPQAERQRLAIAR-VDLPLDQS------EVAIVALDIAGNFLFDTANHRDFLGAMLGTGIVREKTGDVIVLGERGAQVIVVPELVEFLEMSLQQVRSVPVKTRRIEINELKIREPKKKEMTTVEASLRLDAVASAGFGMSRSKMVDLIDSNDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEIAVTKKDRYRVQLTRYM 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: OUC16055.1 (photosystem II S4 domain protein [Alkalinema sp. CACIAM 70d])

HSP 1 Score: 260.8 bits (665), Expect = 6.000e-66
Identity = 136/270 (50.37%), Postives = 190/270 (70.37%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L RE+L K     GVE+    A+ ++ A++A+  WE+   +F  PPE+A ++++  R+ D+ +   GG+PQAERQRV  AR+ +  LDQ     E +   T++ + GNF+FD A+HRDFLGA+LGTGI R+KVGDI++ GERGA  I+ PE+AE++   L  VRSVPVK + IPL EL +R P  KE+ +VEASMRLDA+ASAG GMSRSK+ D+I SGDV VNWKE  S +  +K GD++ +RGKGR+EV +V  T K ++RV +T+F+
Sbjct:    2 LPREDLLK-----GVENRETVAQVIDRAEQAIKTWEVVQTDFLAPPELAEVQQIFSRLTDIHLLTWGGYPQAERQRVAIARS-EIPLDQ-----ETQVELTALEIAGNFLFDTATHRDFLGAMLGTGIVRDKVGDIIVLGERGAQAIVVPELAEFLAMQLTQVRSVPVKTRPIPLTELKIREPKKKELTTVEASMRLDAIASAGFGMSRSKMADLITSGDVRVNWKEISSTSHPVKSGDLIAVRGKGRVEVGDVAITKKDRYRVNLTRFV 260          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_010997041.1 (MULTISPECIES: photosystem II S4 domain protein [Nostocaceae] >BAB74589.1 alr2890 [Nostoc sp. PCC 7120] >BAY68515.1 hypothetical protein NIES23_13010 [Trichormus variabilis NIES-23])

HSP 1 Score: 260.4 bits (664), Expect = 7.800e-66
Identity = 141/270 (52.22%), Postives = 187/270 (69.26%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL K     GVE+    AR ++ A++A+  WE+ V +F  PPE+A I+RV  R+ D+ +   GG+PQAERQR+  AR  +  LDQ Q           + + GNF+FD A+HRDFLGA+LGTGI REK GDI++ GERGA  I+ PE+AE++   L  VRSVPVK + I L EL VR P  KE+ +VEAS+RLDA+ASAG GMSRSK+ D I+SGDV VNWKE   A+S +K GD++ IRGKGRLEV E+  T K ++RV++T+++
Sbjct:    2 LPREELLK-----GVENRDSVARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLVAWGGYPQAERQRLAIAR-AELPLDQSQ------VSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQPIELTELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEIAVTKKERYRVQLTRYM 259          
BLAST of NO13G00770 vs. NCBI_GenBank
Match: WP_073642663.1 (photosystem II S4 domain protein [Nostoc calcicola] >OKH31930.1 photosystem II S4 domain protein [Nostoc calcicola FACHB-389])

HSP 1 Score: 260.4 bits (664), Expect = 7.800e-66
Identity = 139/270 (51.48%), Postives = 190/270 (70.37%), Query Frame = 0
Query:   68 LNREELRKSLVAEGVED-ILAARAVEAADKALTNWEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVDYELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVGDILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPVTKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSLLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI 337
            L REEL K     GVE+    AR ++ A++A+  WE+ V +F  PPE+A I+RV  R+ ++ +   GG+PQAERQR+  AR+ +  LD+ Q          +V + GNF+FD ASHRDFLGA+LGTGI REK GDI++ GERGA  I+APE+ E++  +L  VRSVPVK + I + EL VR P  KE+ +VEAS+RLDA+ASAG GMSRSK+ D+I+SGDV VNWKE   A+S +K GD++ IR KGRLEV E+  T K ++RV++T+++
Sbjct:    2 LPREELLK-----GVENRDSVARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTEVQLVVWGGYPQAERQRIAIARS-ELPLDRSQ------VSLVAVEIAGNFLFDTASHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVAPELVEFLEMSLKQVRSVPVKTQQIEITELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDLIDSGDVRVNWKEVTQASSQVKSGDLIAIRSKGRLEVGEIAVTKKDRYRVQLTRYM 259          
The following BLAST results are available for this feature:
BLAST of NO13G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_104388584.13.500e-6650.74photosystem II S4 domain protein [Cuspidothrix iss... [more]
WP_011317862.14.600e-6652.22photosystem II S4 domain protein [Trichormus varia... [more]
WP_099532766.14.600e-6651.71photosystem II S4 domain protein [Limnothrix sp. P... [more]
WP_096641760.14.600e-6651.67photosystem II S4 domain protein [Calothrix brevis... [more]
WP_104909074.14.600e-6651.48photosystem II S4 domain protein [Nostoc sp. 'Loba... [more]
WP_015140008.16.000e-6652.04photosystem II S4 domain protein [Nostoc sp. PCC 7... [more]
OBQ12807.16.000e-6651.85RNA-binding protein [Anabaena sp. LE011-02][more]
OUC16055.16.000e-6650.37photosystem II S4 domain protein [Alkalinema sp. C... [more]
WP_010997041.17.800e-6652.22MULTISPECIES: photosystem II S4 domain protein [No... [more]
WP_073642663.17.800e-6651.48photosystem II S4 domain protein [Nostoc calcicola... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001823NSK001823Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00770.1NO13G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G00770.2NO13G00770.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G00770.3NO13G00770.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596840gene_6935Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100303g8gene8686Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00770.1NO13G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G00770.2NO13G00770.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G00770.3NO13G00770.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00770 ID=NO13G00770|Name=NO13G00770|organism=Nannochloropsis oceanica|type=gene|length=2014bp
ACAGGCACCTCTAGGATGTCCAACCCAGCAGCAAGAAGAAGAGCAGCAGC
AGTAGTAGCTGCCCGCGCCAGCCCCCATCTGTCCCCTCGCCTCCTCCTCC
TTTTCCTGATTGTGACCATTACAGCGACGCACGCTTTTCTCCCTTCCTAC
CTCCCGTCCTTCTCCTCCTCCCACTCCCGCAGCCCCACCTGTCTCAATGC
CGGAGGGGGCAACAGTCTCAACCGCGAGGAACTACGGAAATCCCTCGTCG
CCGAAGGGGTCGAAGACATTCTTGCTGCCCGTGCCGTCGAGGCAGCTGAT
AAAGCCCTGACGAACTGGGAGATGCAAGTCCTCGAGTTTTGTCGTCCCCC
TGAAGTAGCAACCATCAAAAGGGTTTTGGAGCGTGTGGCTGACTTAGCCA
TCACGCCCGACGGCGGATTCCCTCAAGCAGAGCGCCAACGTGTGTTTTTC
GCCCGGACAGTTGACTACGAGCTCGACCAGGAGCAAGAACGCCGGGAGAG
AGAAGCATACTTCACCTCGGTGTCGGTGGAGGGCAATTTCATTTTTGACA
AGGCGAGCCATAGGGATTTCTTGGGGGCTTTGTTGGGGACGGGGATAACA
AGGGAGAAGgtaaaaggaacaagaaagaaaacagacaggcaggcagaaag
gcagggagaggggaagagggggagggcaggaagaaggaaaagatgggact
tgtgtcgtcaacttcgaagcgggccttttctccccctttaccacgacctc
tcatgtcatctctttgcattcttagGTGGGTGACATTTTACTGCAAGGCG
AACGAGGCGCTCACGTAATCATGGCTCCGGAGGTAGCCGAATACGTCATG
ACCGCGTTGGCATCCGTGCGGAGTGTGCCTGTGAAAAACAAGGCCATCCC
TCTGAAAGAGTTGGGGGTAAGGCCCCCGGTGACCAAGGAGGTAAGAAGTG
GAATAGGGAAGGGTCGTGAGAGGGCGGACGGGAACTAGCGACCGATGGCT
AGAAGAGGAGGAGACGTCGTGAAGAATACTCGGCTTTCTCGTCCTGAAGG
CGTGCGTATTTGTACATGCTCGCTTGTCGTCTTCACTTGTTCGGACACAC
CTTCCTTCCTCGCTCTTTCTTCCACACACAGATGCAATCGGTGGAGGCTT
CCATGCGTCTGGATGCAGTGGCCAGCGCCGGGATGGGCATGAGCCGGAGC
AAGCTCAAGGTAGGTAGGTAGGCCACATCTCCACGGGCCCCGGGGACACT
CACACCTTTCCCTTCCCCTTTCCCCCTTCACCCTTTCTTTTTTGTGCACG
AAAATGATTTTGGCATTGCTTAGGGTGTCTTGTTCTGGTGCATGTATTCC
TTTTCTACTGCCCTATCTGGCAGCCAAAAATGTGCTTCCGTCGAGCTAAA
ATTTTATCTCCAACTCAACATTTCTTTTCCTCCTTCCATTCCTCCCTCCC
GCCCTCCTCCCTTTTCTCGTAGGATATGATTGAGAGCGGCGACGTTCTAG
TAAATTGGAAGGAGACGAAATCCGCCAACTCGTTGTTGAAAGGCGGTGAC
ATCGTCACCATCCGTGGAAAAGGCCGTCTGGAGGTCAACGAGGTTGAGAC
GACGAGCAAAGGCAAATTCCGCGTCAAGATGACCAAGTTTATCTAGGCGT
CATCTAAGACCCGATGGGATCAGGTCGAGGGATGGAATGACGGGAGTGTG
GGATCGAGGAGGGAGGGGAGGGTAAGAGGGAGGCTTACCCATCAAGCAGC
AGCAGCAGCAGCAGCAGCAGTAGCAGTTGCGATCATGACCATCACAGAGA
CCCTTCATCCTTAGGCATGCGGGAGCCGGTGAGCATCAGGAGGAAATGAT
GGAACAGTTGTATATCCATGTGTTAGAAAAAGAATCTGCAGACAAGAATA
AGGAGTAAGCGGAGCACAAACACTAGCGACATTAGAGAGAGAAAGAGGGA
GACATAAAACAAAGAATTGAATGAAGATTGATTTAAAGAAGGAAAATCTA
ACGACACTGTGGAA
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protein sequence of NO13G00770.1

>NO13G00770.1-protein ID=NO13G00770.1-protein|Name=NO13G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MSNPAARRRAAAVVAARASPHLSPRLLLLFLIVTITATHAFLPSYLPSFS
SSHSRSPTCLNAGGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTN
WEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVD
YELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVG
DILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPV
TKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSL
LKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI*
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protein sequence of NO13G00770.2

>NO13G00770.2-protein ID=NO13G00770.2-protein|Name=NO13G00770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MSNPAARRRAAAVVAARASPHLSPRLLLLFLIVTITATHAFLPSYLPSFS
SSHSRSPTCLNAGGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTN
WEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVD
YELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVK
GTRKKTDRQAERQGEGKRGRAGRRKRWDLCRQLRSGPFLPLYHDLSCHLF
AFLGG*
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protein sequence of NO13G00770.3

>NO13G00770.3-protein ID=NO13G00770.3-protein|Name=NO13G00770.3|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MSNPAARRRAAAVVAARASPHLSPRLLLLFLIVTITATHAFLPSYLPSFS
SSHSRSPTCLNAGGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTN
WEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVD
YELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVG
DILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPV
TKEVRSGIGKGRERADGN*
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Synonyms
Publications