NO13G00690, NO13G00690 (gene) Nannochloropsis oceanica

Overview
NameNO13G00690
Unique NameNO13G00690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3941
Alignment locationchr13:232146..236086 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:232146..236086 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
IPR002893Znf_MYND
Homology
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BLAST of NO13G00690 vs. NCBI_GenBank
Match: XP_022900335.1 (protein msta isoform X2 [Onthophagus taurus])

HSP 1 Score: 66.2 bits (160), Expect = 7.800e-7
Identity = 39/111 (35.14%), Postives = 56/111 (50.45%), Query Frame = 0 
Query:  583 GLPLN---HAYALFPRACSSLHSCFPNSTLSIAKAAKDYRLQIRALKEIKKGEAITVSYVNAELSTRQRQLALAKGRFPQKGGGTEGGWACMCERCVDPKEGGLETGTVGC 691
            GL +N      AL+P ACS  H+C PN+  S      +YR+ +RA   IKKGE IT  Y ++   T+ R+  L + ++          ++C CERC DP E G     + C
Sbjct:  238 GLEVNQGAEVMALYPIACSMEHNCIPNTIHSFEDEFANYRITMRAALPIKKGERITTMYTHSLWGTQARREHLKETKY----------FSCSCERCKDPTEMGTYLSALRC 338
[Close]
BLAST of NO13G00690 vs. NCBI_GenBank
Match: XP_022900334.1 (protein msta isoform X1 [Onthophagus taurus])

HSP 1 Score: 66.2 bits (160), Expect = 7.800e-7
Identity = 39/111 (35.14%), Postives = 56/111 (50.45%), Query Frame = 0 
Query:  583 GLPLN---HAYALFPRACSSLHSCFPNSTLSIAKAAKDYRLQIRALKEIKKGEAITVSYVNAELSTRQRQLALAKGRFPQKGGGTEGGWACMCERCVDPKEGGLETGTVGC 691
            GL +N      AL+P ACS  H+C PN+  S      +YR+ +RA   IKKGE IT  Y ++   T+ R+  L + ++          ++C CERC DP E G     + C
Sbjct:  241 GLEVNQGAEVMALYPIACSMEHNCIPNTIHSFEDEFANYRITMRAALPIKKGERITTMYTHSLWGTQARREHLKETKY----------FSCSCERCKDPTEMGTYLSALRC 341
[Close]
BLAST of NO13G00690 vs. NCBI_GenBank
Match: XP_022900336.1 (protein msta isoform X3 [Onthophagus taurus])

HSP 1 Score: 66.2 bits (160), Expect = 7.800e-7
Identity = 39/111 (35.14%), Postives = 56/111 (50.45%), Query Frame = 0 
Query:  583 GLPLN---HAYALFPRACSSLHSCFPNSTLSIAKAAKDYRLQIRALKEIKKGEAITVSYVNAELSTRQRQLALAKGRFPQKGGGTEGGWACMCERCVDPKEGGLETGTVGC 691
            GL +N      AL+P ACS  H+C PN+  S      +YR+ +RA   IKKGE IT  Y ++   T+ R+  L + ++          ++C CERC DP E G     + C
Sbjct:  188 GLEVNQGAEVMALYPIACSMEHNCIPNTIHSFEDEFANYRITMRAALPIKKGERITTMYTHSLWGTQARREHLKETKY----------FSCSCERCKDPTEMGTYLSALRC 288
The following BLAST results are available for this feature:
BLAST of NO13G00690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_022900335.17.800e-735.14protein msta isoform X2 [Onthophagus taurus][more]
XP_022900334.17.800e-735.14protein msta isoform X1 [Onthophagus taurus][more]
XP_022900336.17.800e-735.14protein msta isoform X3 [Onthophagus taurus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00690.1NO13G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596868gene_6944Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00690.1NO13G00690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00690 ID=NO13G00690|Name=NO13G00690|organism=Nannochloropsis oceanica|type=gene|length=3941bp
CTGAAATCTGCAGAAAAGTAATATAGAGGAGATCGATATGATGGTGCTCT
TTGCCAAGCGACGTCGTCCCTGCGAAGTGGTCTATCAGCAAGACATGCAC
TCATGCACTTGCAGCCTCATTTTAATAATCTCCTTTTTGATTTCATGCTT
CCCTCTCATGCCCTGTCTTTGGTTGCCATACACAGAAGCCACAGCATCAC
GCCACCTCTCGCTGATGGTGGCTTCTGTTCGCCGCCGTCGCGCCCTCCCT
CCGGACTCCGCCCTTGTCCTCCCTCTAGACGCCACCCCCTCAACGCCCAA
GGCCCTCGAGTATGGATTTGGCAACGGCGAAGATGATGATGGAGAGGGGC
GGTTGGAACAGTGCAAGGCGTGTGCCGTCTGTGGGAAGCCCAATGGCAAG
GCCTGCGTCAAATGCAACGGAGGTGCTTTCTACTGTGACAAGGACTGCCA
AAGgtaagtgagttgggccgtatgaaagcagcacatcttcattcttctga
ttatcaagtgtatgaggcacttgtccgtgggccgcttgttactttacgat
cttactgtctcgtcttctcctcctttttttctccgtcatctcaacttacg
ctcccgcccacctcatcgtttctctctccttcgctctttcctttttccta
tccatctgcgtccttcagAAAACACTGGCCTGTACACAAGCTGGAATGTT
GCTGGCCCGTCAAAAAGGCCAGCACACTGAATCCCCTTCATTCCTTCTCC
TCCACTTCTCTCTGCCCAAGCAATCCCTTCTACCGGTACCAACGCCGACA
CCTCATCGCCACGGCCCCCATTAAGCCAGGGCAAGTTATCTTGGAGGAAT
GTCCTGTGGTCTTTTGGCCTGTGATTACGAAGGCATGGGTGACTGACTCT
CGATTGTGGCATCGGACAATGGTGAAAGGGGGAAAGAGAGGAAAGGAGGA
GGAAGAGGAGGAGGGTGAAGAAAAGGGGGAGGAAAATGTATTGATAGGAC
CAGCACATTTGTACACACAATGTATTTGTTGCATGTCCTCGATGAAGCAT
GGGCAAGGGGTTAAGTGCAAAAATTGTGGCTTGGAGATGTGTAGCCCGAT
TTGCCACTATAGTGAGCAAATGGTCGAGAAGCATGCCTTGCACGAATGTA
CCTTTGTCCAATCTCTTCTCTCCTCCTCATCCTCCTCCCCATCCTCCTTT
ACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTGCTGCACCCT
CCCACGTCCAGCCGGTGCTATCGCCCCTTCTCCTCCCTCCTCTTCTCCTC
CCTCTCTTCCTTCTTTCCCTGACCCCCTTTCTGTCGTCCCCCTCCTCGGC
ATCCTCCGTTGCCTCAGTTTGAAAGAACAAGACCCTCTCGCTTACCAGCG
CCTTCTCCTTTCCCCCTCCTACGTGGAACACCTCCATCCCACCTATCTAT
GCACTGTCCTTGACTCCGTCGCGGCAGCCTTCCAGCGGGCGCAGATAAAA
CAAGGAGAAGAGCAATGGTGCTTAATTCACGAGCTTCCTCATAACAGCAG
CAGCAGCAACAACAACAGTAGCAGCAGTAGCAGCAGCTATAACAGTAGCA
GCAGCAGCAGCAGCGATAACATTAGCAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACCACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACGACAACAGCAGAAGCAGCG
GCAGCAGCAACAACAACAACAATGACAGCAACAAAAAATGCAAAAAGGGC
AACAGCAAGGATAATCAGCACCAAATCCACAAGCAACTGCTCCTCCCCCT
TCCCCCCTTTCTCCCCCTACATCACCTTCCTCCCTTCTCTTCCCACTCTC
GCCGTATCTTCTCCACTCCGGAAGTCGCGCACCTCCTCTCCCTCACCCTC
TTCCACTCCCTCCCCCTCCCCACCCACGACAACCCCTCCGTCCGCCCTGG
CCTCCCCCTCAACCATGCCTACGCTCTCTTCCCCCGTGCCTGCTCCTCCC
TCCATTCCTGCTTCCCCAATTCGACCCTCTCCATTGCCAAAGCGGCAAAG
GATTACCGCCTACAAATACGAGCCTTGAAGGAAATAAAAAAAGGAGAAGC
AATCACCGTTTCATACGTCAATGCCGAGCTCTCGACCAGACAACGACAGC
TGGCTTTAGCCAAGGGGAGGTTTCCACAGAAGGGGGGAGGGACGGAGGGA
GGGTGGGCGTGTATGTGTGAGAGATGCGTGGACCCGAAGGAGGGAGGGTT
GGAGACGGGGACTGTGGGTTGCCCCCTGTGTAGGAGGAGGGAGGGGGAGG
GATGGGGGGAGGAAATGTGTGAAAAAGAAGGAAGGAAAGGAGGAGGAGGA
GGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGGTTGTTTTCACC
ATTACGACCGGTGGTGGGAGGGGGGAGTGCGAGAAGGAGGAGCGAGAGTG
CAAGTGACAGCAAGCAGAAGCACCAGCACCAGCACCAGCACCAGGAGGAA
GAGGAGAAGGACGAGGACGACCCTTCCCGACCGCTACTTGCTCCATTTAA
GTCCTCCTCCGCTTGCTTGTCCTACTCCTCCTTCTCCTATTATCAATGCG
ATGAGTGTCATGCCACTATCCCAGCTGCTGACGTCTTGGCCATTGAACGC
CGCTTCGAAGCAGAGCTTGAAAAAGTTTCACACCAAGGAAAGATGGAGGG
AGGGAGGGAGGGAGTTTTGAGAACGGCGCGTCAGGTGGACGATTACGAGA
CTCTGATTTGTCTGTTGAGTGGACGGTGGTTGCATCCGCAGCATTCGTTG
CTGCAGAGGGCGAGAAGGTTCTTGTTTGATGGTGTGTGTCGGATGGTGGA
TGAGGCAAAAGAGAGGGTGGGTACAGCGATACAGATCGAGAAGGAGGAGG
AGAAGGAGGAGGAGGAGAAAGACATGGAGGGGATGGAGGAGGGGAGGAGG
GGGTGTTTGAAGATAAGTAGTCAGAAGTGTAGTTGGAGGGCAAATGAGAG
GAGGGAAAGAAATGAGAGGAGGAGGTGGGAGGCGCTGTTGGAATGGAGCG
AGTGGGATGAGCGGCTGATTGCCCTGGCCCCGGTGATTTTCTCCTCTATT
CAGGCCACGCACCAGACCCTGGACGAGCAATCCACGGCCTTGATCTTGGG
GGAATGGGCACTGGCGGTCCACCGGCAGGCCTATCGGAGGCGGGAGGATG
CACGTGAGATGCTAGGAGGGAGGGGGAAAATATATGGTATAGAGGAGGGT
CCACACAAAAGAGCAATGCAGGAGGAGGCGAAGCGGTTATTGAAGAAGGC
AGAGGAATCTTTGTCCTCTGGTCAAGGGGCGTATTTTCGGCGACAAATTG
TGTTGGAACGGGAGGTGAGAGAGGCCCTGAATGCCGACGATCCTGCAGCG
GAAATGCTGTTGATGGGAGGGAAAACACGCGAGATAGTGATGCCAGCGTC
CTTGACAGGGCCGGGCAACGGGAATGGTCAGAGACTTATGTACATGGCCA
ACCACCCGACCAACGTTGTGGGGAGGGGACAAGGATGTGAGGTAGGGGCG
GAGGGAGGGAATGAAAAGCAGAAGGAAGAGCAATTGGAGACGCTGGTGCA
GATGGCCTTGGCAGGCCAGGAAGGAAGGTCGCATGTAATCTCCGACATGT
GGACAGTAGCGACAGTCAAGGGGCGACCCAAAATGAAAAGTAAGGAGGCA
GTGGGTACAGCCGCAAATGTTTTGAAGGGAAGGGTAGGATTAGAAGCAGC
AGAAGCAGCAGCAGGAGGAGCTGCGACAGGGGCGACAGGGACGCTAAGAA
AAAGACCAGCAGGGAAGGGTAAAGTAGAATGAACGGCAAATAAGTGAAAA
AGTACCGCAACTGAATGAAGGGAAAATGCAAACAAATATTT
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protein sequence of NO13G00690.1

>NO13G00690.1-protein ID=NO13G00690.1-protein|Name=NO13G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1210bp
MMVLFAKRRRPCEVVYQQDMHSCTCSLILIISFLISCFPLMPCLWLPYTE
ATASRHLSLMVASVRRRRALPPDSALVLPLDATPSTPKALEYGFGNGEDD
DGEGRLEQCKACAVCGKPNGKACVKCNGGAFYCDKDCQRKHWPVHKLECC
WPVKKASTLNPLHSFSSTSLCPSNPFYRYQRRHLIATAPIKPGQVILEEC
PVVFWPVITKAWVTDSRLWHRTMVKGGKRGKEEEEEEGEEKGEENVLIGP
AHLYTQCICCMSSMKHGQGVKCKNCGLEMCSPICHYSEQMVEKHALHECT
FVQSLLSSSSSSPSSFTSSSSSSSSSSSPCCTLPRPAGAIAPSPPSSSPP
SLPSFPDPLSVVPLLGILRCLSLKEQDPLAYQRLLLSPSYVEHLHPTYLC
TVLDSVAAAFQRAQIKQGEEQWCLIHELPHNSSSSNNNSSSSSSSYNSSS
SSSSDNISNNNNNNNNNNNNNNNHNNNNNNNNNNNNNNNNNNNDNSRSSG
SSNNNNNDSNKKCKKGNSKDNQHQIHKQLLLPLPPFLPLHHLPPFSSHSR
RIFSTPEVAHLLSLTLFHSLPLPTHDNPSVRPGLPLNHAYALFPRACSSL
HSCFPNSTLSIAKAAKDYRLQIRALKEIKKGEAITVSYVNAELSTRQRQL
ALAKGRFPQKGGGTEGGWACMCERCVDPKEGGLETGTVGCPLCRRREGEG
WGEEMCEKEGRKGGGGGGGRGRGGGGGGGLFSPLRPVVGGGSARRRSESA
SDSKQKHQHQHQHQEEEEKDEDDPSRPLLAPFKSSSACLSYSSFSYYQCD
ECHATIPAADVLAIERRFEAELEKVSHQGKMEGGREGVLRTARQVDDYET
LICLLSGRWLHPQHSLLQRARRFLFDGVCRMVDEAKERVGTAIQIEKEEE
KEEEEKDMEGMEEGRRGCLKISSQKCSWRANERRERNERRRWEALLEWSE
WDERLIALAPVIFSSIQATHQTLDEQSTALILGEWALAVHRQAYRRREDA
REMLGGRGKIYGIEEGPHKRAMQEEAKRLLKKAEESLSSGQGAYFRRQIV
LEREVREALNADDPAAEMLLMGGKTREIVMPASLTGPGNGNGQRLMYMAN
HPTNVVGRGQGCEVGAEGGNEKQKEEQLETLVQMALAGQEGRSHVISDMW
TVATVKGRPKMKSKEAVGTAANVLKGRVGLEAAEAAAGGAATGATGTLRK
RPAGKGKVE*
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Synonyms
Publications