NO13G00590, NO13G00590 (gene) Nannochloropsis oceanica

Overview
NameNO13G00590
Unique NameNO13G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2904
Alignment locationchr13:201736..204639 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:201736..204639 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009577Sm_multidrug_ex
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO13G00590 vs. NCBI_GenBank
Match: EWM21730.1 (Putative small multi-drug export [Nannochloropsis gaditana])

HSP 1 Score: 556.2 bits (1432), Expect = 1.400e-154
Identity = 332/636 (52.20%), Postives = 402/636 (63.21%), Query Frame = 0 
Query:    1 MKQHLGMAAAAAAMLAACLTPTITAFIPLSMP-SSSSSLTCLSRSSIRGG-ANLASFSLSPRSRPSSFSSTIAT--ATATSFSQDPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVLATLPIVVLAATLVFTQGPAIAQAATKRAAASSPPSVRTNKVREYVLKPLGESVGKLGAFPPLRAFRSITHSLSHWATHGPIAQFFSTAWNEPAARYMLDPTTTPLAPNDIAGHVLEAIQARVPPTWSPLAVVALLSFLPIFEARVGVPFGLALGAPWLKALVVGMAANALVIPVAAGMGTFFRDVNNASPLLETATAARERYQDLERAFQELQGRLALKTRVLEEEEGRLRLTIDTAIAVVRKGELVMDLATRQGLVKEITEASKVLLGLSESDAKQFSQRLEEQFFETSVGSVMSDS-DGAFEDVSVADLGQRRVELAWHPDVTLFPKLGQAVVKYQLDEIAGQAQADFTIRPRELELLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELDAGVITAEDKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARIAELQMQGKLMRNYGWPKAVVYVGLPLPFSGVWTAMFWSKCLGMKFGPSATGALVGLILSTL 632
            M+QHL    A   +L ACLT T TAF P  +  S SSS+   S     G   NL   S   RS PS  + + A+       +S+ P R                            A+ VL  LP V++  + + T GPA+A AA   +  +S    R NKV+EY+LKP+G  VG +G  PPL+  R  + SL  W THGP+ Q  + AWNEP ARYMLDP T P+ P ++ G VLEAIQAR+PP+WSPL VVALLSFLPIFEARVGVPFGLALGAPWLKALVVG+ ANA+ IPVAAG+G F ++V   SP+LETATAAR RYQ  ERA+QELQG+L++KT +LEEEE  LR TID AI VVRKG+++MD ATRQGLV+EITEAS++LL L+++D +QF  RLEEQFF+TSVGSV+ D+ DGAF DV+VA+LGQRRVELAW+PDVTLFP LGQAVV YQL+EIA QAQADF +RPREL LLRE                                   EL++GV+T E+K                                          AR+AELQM+G LM+NYGWPKA+VYVG+PLP SG WTAMFWS CLGMK+GPSA G LVG+ LSTL
Sbjct:    1 MQQHL----ATTTLLVACLTSTSTAFHPPPISISPSSSIPSRSLYPASGSDKNLGFPSSLHRSSPSYAALSFASNQDPRRQYSRRPSRKDDNSQQERPIQGALPQVEERMSSLSPLARTVLRALPTVLVVVSFLVTCGPAVAHAAASSSLPTSVTPTRVNKVKEYILKPIGRWVGGIGNAPPLKMVRDTSLSLCSWTTHGPVGQSLAKAWNEPVARYMLDP-TAPVGPYNLPGRVLEAIQARIPPSWSPLGVVALLSFLPIFEARVGVPFGLALGAPWLKALVVGLTANAVAIPVAAGVGLFCKNVEGVSPVLETATAARARYQTFERAYQELQGKLSVKTSLLEEEETGLRTTIDRAIDVVRKGQVLMDKATRQGLVREITEASRLLLQLNDADTRQFYARLEEQFFDTSVGSVLPDNKDGAFADVTVAELGQRRVELAWYPDVTLFPMLGQAVVTYQLEEIAAQAQADFCVRPRELLLLREEVASLKQEVEREGGRLKAAAKKAAEAGKETVSLARELESGVLTPEEKT-------EARKRAMAEAKEATTSETGPGSFVPIAEREKEEDARVAELQMRGTLMKNYGWPKAIVYVGVPLPLSGAWTAMFWSTCLGMKYGPSARGTLVGVGLSTL 624
The following BLAST results are available for this feature:
BLAST of NO13G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21730.11.400e-15452.20Putative small multi-drug export [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001841NSK001841Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00590.1NO13G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100505g3gene8698Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00590.1NO13G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00590 ID=NO13G00590|Name=NO13G00590|organism=Nannochloropsis oceanica|type=gene|length=2904bp
ATGAAGCAGCACTTGGGCATGGCCGCAGCAGCGGCAGCAATGCTAGCTGC
CTGTCTCACGCCCACTATTACAGCCTTCATCCCTCTCTCTATGCCTTCCT
CCTCCTCGTCCTTGACATGCCTGTCCCGCAGCAGCATTAGGGGAGGCGCA
AACCTTGCTTCTTTTTCCCTTTCCCCCAGGAGCAGACCGTCCTCCTTCTC
CTCAACCATTGCCACTGCCACCGCGACTTCCTTTTCTCAAGACCCAATAA
GACCAGAGCAACAACAATCACAACAATCACGGTGGCAGAAGTCGCTTCAA
AATATCCAACATAGCCTCCACACCCTCTCCCCCAAGGCCCAAGCCGTTCT
AGCCACCCTCCCCATCGTCGTCCTCGCTGCCACTCTCGTATTCACTCAAG
GCCCAGCCATCGCACAAGCCGCCACCAAGCGTGCCGCCGCCTCCTCCCCT
CCCTCTGTTCGCACCAACAAAGTCCGCGAATATGTACTAAAACCTCTCGG
AGAATCCGTGGGCAAACTAGGCGCCTTTCCCCCACTGAGAGCCTTCCGCA
GCATCACACACTCCCTCTCCCACTGGGCCACCCACGGTCCCATCGCCCAA
TTTTTTAGCACTGCCTGGAACGAGCCGGCCGCGCGGTACATGCTCGATCC
GACCACCACCCCCCTTGCCCCCAATGACATCGCCGGCCACGTGCTCGAGG
CCATCCAGGCCCGCGTCCCTCCCACCTGGTCTCCCCTCGCCGTCGTCGCC
CTCCTCTCCTTCCTCCCCATCTTCGAAGCGCGTGTGGGAGTCCCCTTCGG
CCTAGCCTTGGGTGCGCCATGGCTAAAAGCTCTCGTGGTTGGAATGGCTG
CCAATGCCCTTGTCATACCGGTGGCTGCCGGTATGGGCACGTTTTTCCGG
GATGTGAATAACGCGTCTCCTTTGCTCGAGACGGCAACGGCCGCAAGGGA
GAGATATCAGGATCTAGAGAGAGCTTTTCAAGAGCTGCAAGGGCGCTTGG
CTCTCAAGACGCGAGTGTTGGAGGAGGAGGAGGGGAGGCTGCGGTTGACT
ATTGACACGGCGATTGCGGTAGTGAGGAAGGGGGAACTGGTGATGGACTT
GGCAACCAGACAGGGGCTTGTGAAAGAAATCACCGAGGCCTCCAAGGTGT
TGCTTGGCCTAAGTGAAAGCGACGCGAAACAATTCAGTCAACGACTGGAG
GAACAGTTTTTTGAGACGTCCGTTGGGAGCGTGATGAGCGACAGCGACGG
CGCATTTGAGGATGTGTCGGTCGCGGACTTGGGACAGAGAAGGGTGGAGC
TGGCATGGCACCCGGATGTGACCTTATTTCCGAAGCTTGGTCAGGCAGTT
GTGAAATACCAATTGGACGAAATCGCAGGGCAGGCTCAGGCGGATTTCAC
GATCAGGCCGCGGGAGTTGGAGTTGTTGAGGGAGGAGGTGAAGCGGCTGA
AGGAGGAGGTAGGGAGGGAGGGAGGGAAGTTGAGGAAATTGGCAAAGAAG
GCTGCGGAGGTAGGGAAGGAAACCGTCCGGGTGGCGCGAGAGTTGGATGC
TGGCGTGATCACGGCGGAAGATAAGGCGAAGGCCCGCAAGGAGGCAATGG
CCAAAGCAAAAGAAGAAGCAGCAGCAGCAGCGGCAGCAGCAAGCCCTGCC
GGCGGCCCTGGAAAATTCGTCCCCATGGCCGAAAGAGAGAAGGAGGAAGA
AGCCCGCATCGCCGAGCTGCAGATGCAGGGGAAATTGATGCGCAACTATG
GATGGCCGAAAGCAGTGGTGTATGTAGGCTTGCCCTTGCCGTTCTCAGGC
GTGTGGACCGCGATGTTCTGGTCAAAGTGCCTGGGGATGAAATTTGGGCC
TTCGGCGACTGGAGCGTTGGTAGGCTTAATCTTATCCACATTGATAGGGC
TTGGGTTGTGGTTGACGGGACCTGTTGGGGTGTTGATATACGGTCTGGTC
CTGGCAGTGATGTACGGGGAGGAGAACCCGGCGATGGCCGTGGGGAAGGT
GCTGGTGATGCTGAGGGAGGGGTTGGCCGGGATTTTCAAGGGAGGGGGAG
GGAAGAATAGGGAGGGAGGGGGGACAATGGGAAGGAAGTAGAAAGAAAGA
TGCTATTTTAAATGAATGTGCGGGGGAGGCAGCGACGCCCAGTTCCTTCC
TTTCCTCAACAAAGAAAGACAGGAGTTTTAAGTGAACAATACACATACCC
GTGCGCGCACACACACATTCACTCACGAAGCCCGTAGAAGCAGCAGAAGC
GGCAACAACAGCAGACAACAAAAAACTAAGAACAAAAAGAAACGACAGGC
GAAACGCTTTGATGGAATTAAATTGTTGTGTGTTGAGGCCTTGATCTATT
GATTCGTTTGGGTGTGGCAGTCCGGGAGCTCTCCTTTTGAAGAGAATGGA
CGACGATGCGCATGGCCTCCTCCCTCCTCCCCCTTCCCCGCCCTGGTGAC
CGCAAGAACACGTCAAGGAGGGATGCGGGGCTGAAGGAGGCGCCCGGTCC
CATCCACGTGCTGAAAATCGCTCTGAAAATAACATTGATTGACTTCCTCC
TCTTTTTTCTCCTCCTCCTCTTCCGCCTCTTCCTCCTTGTTTTGCTCCTC
CTCTTCTTCCTTACCTTACCATCGTCCTTGTTCTCGTCCTTATTTTTCTT
GTTCATATTCATGCTCTTCTCTTTCTGCTTCTTCTTCTGCTTCTTTTCTG
GCTTTTGCTCTCCATGTCTATGGTTTCTAGAAGCTTTCACGTTCTTCCTT
CTCAATCCTTTTTTCTTCTCTGTTGCTGCTTTTCCTGCTGCTGCTGCAAC
GTTTTCTGCTGCTGCTGCTGCCGCTGCTCTTTCTTAGTGTATTTTCAAGC
ATGCCAGGCCATGTCGTCATAGTCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTC
back to top

protein sequence of NO13G00590.1

>NO13G00590.1-protein ID=NO13G00590.1-protein|Name=NO13G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MKQHLGMAAAAAAMLAACLTPTITAFIPLSMPSSSSSLTCLSRSSIRGGA
NLASFSLSPRSRPSSFSSTIATATATSFSQDPIRPEQQQSQQSRWQKSLQ
NIQHSLHTLSPKAQAVLATLPIVVLAATLVFTQGPAIAQAATKRAAASSP
PSVRTNKVREYVLKPLGESVGKLGAFPPLRAFRSITHSLSHWATHGPIAQ
FFSTAWNEPAARYMLDPTTTPLAPNDIAGHVLEAIQARVPPTWSPLAVVA
LLSFLPIFEARVGVPFGLALGAPWLKALVVGMAANALVIPVAAGMGTFFR
DVNNASPLLETATAARERYQDLERAFQELQGRLALKTRVLEEEEGRLRLT
IDTAIAVVRKGELVMDLATRQGLVKEITEASKVLLGLSESDAKQFSQRLE
EQFFETSVGSVMSDSDGAFEDVSVADLGQRRVELAWHPDVTLFPKLGQAV
VKYQLDEIAGQAQADFTIRPRELELLREEVKRLKEEVGREGGKLRKLAKK
AAEVGKETVRVARELDAGVITAEDKAKARKEAMAKAKEEAAAAAAAASPA
GGPGKFVPMAEREKEEEARIAELQMQGKLMRNYGWPKAVVYVGLPLPFSG
VWTAMFWSKCLGMKFGPSATGALVGLILSTLIGLGLWLTGPVGVLIYGLV
LAVMYGEENPAMAVGKVLVMLREGLAGIFKGGGGKNREGGGTMGRK*
back to top
Synonyms
Publications