NO13G00580, NO13G00580 (gene) Nannochloropsis oceanica

Overview
NameNO13G00580
Unique NameNO13G00580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3519
Alignment locationchr13:198137..201655 +

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor isoform 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:198137..201655 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of NO13G00580 vs. NCBI_GenBank
Match: EWM21727.1 (eukaryotic initiation factor 4a, partial [Nannochloropsis gaditana])

HSP 1 Score: 176.4 bits (446), Expect = 2.000e-40
Identity = 91/112 (81.25%), Postives = 94/112 (83.93%), Query Frame = 0
Query:   29 MLLQAQSGHGKTAIFATAILNAIDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSPHVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGR 141
            MLLQAQSGHGKTAIFATAILN IDT  P KEAIQAIVLVPNRDLARQVTAEIESLGQYL+PPLRIQCCVGSP+ KTEEARDERIALVKTL+ TPP    G  G  C    GR
Sbjct:    1 MLLQAQSGHGKTAIFATAILNNIDTNAPAKEAIQAIVLVPNRDLARQVTAEIESLGQYLEPPLRIQCCVGSPNTKTEEARDERIALVKTLRITPPPRPGGDHGEDCRPGGGR 112          
BLAST of NO13G00580 vs. NCBI_GenBank
Match: CCG81005.1 (ATP-dependent RNA helicase eIF4A [Taphrina deformans PYCC 5710])

HSP 1 Score: 167.9 bits (424), Expect = 7.100e-38
Identity = 118/366 (32.24%), Postives = 182/366 (49.73%), Query Frame = 0
Query:    1 MRGIFSKGFEKPSECQKLGIKPLLDGKNMLLQAQSGHGKTAIFATAILNAIDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSPHVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGRDRFGPVIWLKNTKFLVLDEADEMLFDCRNPNGEAEHGGTAKDSSSNYVMLQGLARKLSPTTQIALCSATFSPETTKAAQEIFPRDAFVLITLQDHELNRANIQQFYVVMHRNDERVWLPELMQLKLSTMEKLVSIFANGQIYCFCTNKDQVEMVMKA------------NDYPGTRYTVNIEDFKAGRKTVLVCTNALARGLDVQAASVVINFDL-CDPQRYMQRI 354
            +RGI++ GFE+PS  Q   IKP++ G +++ QAQSG GKTA F+ ++L  +D  +   +  QA++L P R+LA+Q+   + ++G ++D  +    C+G  +V     RD+  AL        PHV+VGT GR+ D+ + R      +   N K  VLDEADEML                  S      +  + + L PTTQ  L SAT  P+      E F RD   ++  +D EL    I+QFY+ + + D   W       KL T+  L       Q   FC  + +V+ +                D    +  V +++F++G   VL+ T+ LARG+DVQ  S+VIN+DL  + + Y+ RI
Sbjct:    8 LRGIYAYGFERPSAIQARAIKPVIKGHDVIAQAQSGTGKTATFSVSVLQKLDVSL---KQTQALILAPTRELAQQIQKVLIAIGDFMD--IECHACIGGTNV-----RDDMKAL-----QDGPHVIVGTPGRVHDMIQRR-----ALRTDNVKMFVLDEADEML------------------SRGFKEQIHDIFQLLPPTTQAVLLSATM-PQDVLEVTEKFMRDPIRILVKKD-ELTLEGIKQFYIAVEKED---W-------KLDTLCDLYETVTITQAVIFCNTRRKVDWLTDKLASRDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPANRENYIHRI 323          
BLAST of NO13G00580 vs. NCBI_GenBank
Match: EQB77172.1 (eukaryotic translation initiation factor 4A, isoform 1 isoform 1-like protein [Camelus ferus])

HSP 1 Score: 166.4 bits (420), Expect = 2.100e-37
Identity = 127/411 (30.90%), Postives = 198/411 (48.18%), Query Frame = 0
Query:    1 MRGIFSKGFEKPSECQKLGIKPLLDGKNMLLQAQSGHGKTAIFATAILNAIDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSPHVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGRDRFGPVIWLKNTKFLVLDEADEMLFDCRNPNGEAEHGGTAKDSSSNYVMLQGLARKLSPTTQIALCSATFSPETTKAAQEIFPRDAFVLITLQDHELNRANIQQFYVVMHRNDERVWLPELMQLKLSTMEKLVSIFANGQIYCFCTNKDQVEMV---MKANDYPGT---------RYTVNIEDFKAGRKTVLVCTNALARGLDVQAASVVINFDL-CDPQRYMQRIXXXXXXXXXXXXISLIPPYQVDKSSGRNYSIQHITEAYHNTINRW 399
            +RGI++ GFEKPS  Q+  I P + G +++ QAQSG GKTA FA +IL  I+    D +A QA+VL P R+LA+Q+   + +LG Y+        C+G  +V+ E         V+ L+   PH++VGT GR+ D+   R      +  K  K  VLDEADEML                  S      +  + +KL+  TQ+ L SAT   +  +  ++ F RD  + I ++  EL    I+QFY+ + R +   W       KL T+  L       Q   F   + +V+ +   M A D+  +            V + +F++G   VL+ T+ LARG+DVQ  S+VIN+DL  + + Y+ RI            I+++   + DK + R+    + T      +N W
Sbjct:   28 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAE---------VQKLQMEAPHIIVGTPGRVFDMLNRR-----YLSPKYIKMFVLDEADEML------------------SRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKK-FMRDP-IRILVKKEELTLEGIRQFYINVEREE---W-------KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT--EEDKRTLRDIETFYNTSIEEMPLNAW 387          
BLAST of NO13G00580 vs. NCBI_GenBank
Match: KXN71335.1 (DEAD-domain-containing protein [Conidiobolus coronatus NRRL 28638])

HSP 1 Score: 166.0 bits (419), Expect = 2.700e-37
Identity = 122/382 (31.94%), Postives = 188/382 (49.21%), Query Frame = 0
Query:    1 MRGIFSKGFEKPSECQKLGIKPLLDGKNMLLQAQSGHGKTAIFATAILNAIDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSPHVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGRDRFGPVIWLKNTKFLVLDEADEMLFDCRNPNGEAEHGGTAKDSSSNYVMLQGLARKLSPTTQIALCSATFSPETTKAAQEIFPRDAFVLITLQDHELNRANIQQFYVVMHRNDERVWLPELMQLKLSTMEKLVSIFANGQIYCFCTNKDQV----------EMVMKA--NDYPGTRYTVNIEDFKAGRKTVLVCTNALARGLDVQAASVVINFDL-CDPQRYMQRIXXXXXXXXXXXXISLI 370
            +RGI++ GFE+PS  Q+  IKP+L G++ + QAQSG GKTA F+ ++L  ID  V      QA++L P R+LA+Q+   + +LG Y++  +    C+G  +V+ + A+ +          +  HV+VGT GR+ D+         V   +  K  VLDEADEML                  S      +  + + L PTTQ+ L SAT   +  +  Q+ F RD   ++  +D EL    I+QFYV   +++   W       KL T+  L       Q   FC  + +V          E  + A   D   T+  V +++F++G   VL+ T+ LARG+DVQ  S+VIN+DL  + + Y+ RI            I+LI
Sbjct:   39 LRGIYAYGFERPSAIQQRAIKPILTGRDCIAQAQSGTGKTATFSISVLQTIDVNVKHP---QALILAPTRELAQQIQKVVVALGDYMN--IECHACIGGTNVREDAAKFQ----------SGVHVVVGTPGRVFDMINRN-----VFNTEYIKMFVLDEADEML------------------SRGFKEQIYEVFQLLPPTTQVVLLSATMPTDVFEVTQK-FMRDPIRILVKRD-ELTLEGIKQFYVNCEKDE---W-------KLDTLCDLYETITITQAVIFCNTRRKVDWLTDKLKEREFTVSAVHGDMDQTQREVIMKEFRSGSSRVLISTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINLI 370          
BLAST of NO13G00580 vs. NCBI_GenBank
Match: XP_017469413.1 (PREDICTED: eukaryotic initiation factor 4A [Rhagoletis zephyria])

HSP 1 Score: 166.0 bits (419), Expect = 2.700e-37
Identity = 129/408 (31.62%), Postives = 196/408 (48.04%), Query Frame = 0
Query:    1 MRGIFSKGFEKPSECQKLGIKPLLDGKNMLLQAQSGHGKTAIFATAILNAIDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSPHVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGRDRFGPVIWLKNTKFLVLDEADEMLFDCRNPNGEAEHGGTAKDSSSNYVMLQGLARKLSPTTQIALCSATFSPETTKAAQEIFPRDAFVLITLQDHELNRANIQQFYVVMHRNDERVWLPELMQLKLSTMEKLVSIFANGQIYCFCTNKDQVEMVMKA------------NDYPGTRYTVNIEDFKAGRKTVLVCTNALARGLDVQAASVVINFDL-CDPQRYMQRIXXXXXXXXXXXXISLIPPYQVDKSSGRNYSIQHITEAYHNTI 396
            +RGI+  GFEKPS  Q+  I P + G++++ QAQSG GKTA F+ AIL  IDT + D    QA++L P R+LA Q+   + +LG+Y+   +    C+G  +V+ E+AR+           T  HV+VGT GR+ D+   +     V+   N K  VLDEADEML                  S      +Q + + L P  Q+ L SAT  P+  + ++  F RD  V I ++  EL    I+QFYV + + +   W       KL T+  L    +  Q   FC  + +V+ + +              D       V ++ F++G   VL+ T+ LARG+DVQ  S+VIN+DL  + + Y+ RI            I+ I       +      ++ I + YH TI
Sbjct:   42 LRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAILQQIDTSIRD---CQALILAPTRELATQIQRVVMALGEYM--KVHSHACIGGTNVR-EDARN---------LETGCHVVVGTPGRVYDMINRK-----VLRTHNIKLFVLDEADEML------------------SRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR-CFMRDP-VSILVKKEELTLEGIKQFYVNVKQEN---W-------KLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMTNHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFI-------TDEDRRILKDIEQFYHTTI 392          
BLAST of NO13G00580 vs. NCBI_GenBank
Match: XP_020784552.1 (eukaryotic initiation factor 4A-I isoform X2 [Boleophthalmus pectinirostris])

HSP 1 Score: 166.0 bits (419), Expect = 2.700e-37
Identity = 118/366 (32.24%), Postives = 186/366 (50.82%), Query Frame = 0
Query:    1 MRGIFSKGFEKPSECQKLGIKPLLDGKNMLLQAQSGHGKTAIFATAILNAIDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSPHVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGRDRFGPVIWLKNTKFLVLDEADEMLFDCRNPNGEAEHGGTAKDSSSNYVMLQGLARKLSPTTQIALCSATFSPETTKAAQEIFPRDAFVLITLQDHELNRANIQQFYVVMHRNDERVWLPELMQLKLSTMEKLVSIFANGQIYCFCTNKDQVEMV---MKANDYPGTRYTVNIE---------DFKAGRKTVLVCTNALARGLDVQAASVVINFDL-CDPQRYMQRI 354
            +RGI++ GFEKPS  Q+  I+P + G +++ QAQSG GKTA FA +IL  +D  +   +A QA+VL P R+LA+Q+   +++LG YL        C+G  +V+ E  R         L    PH++VGT GR+ D+   R     ++  K+ K  VLDEADEML                  S      +  + +KL  +TQ+ L SAT   +  +  ++ F RD  + I ++  EL    I+QFY+ + + +   W       KL T+  L       Q   F   + +V+ +   M + D+  +    ++E         +F++G   VL+ T+ LARG+DVQ  S+VIN+DL  + + Y+ RI
Sbjct:   44 LRGIYAYGFEKPSAIQQRAIRPCIQGSDVIAQAQSGTGKTATFAISILQKLDLSL---KATQALVLAPTRELAQQIRKVVDALGDYLG--ATCYACIGGTNVRQESQR---------LTEDVPHIVVGTPGRVFDMLSRR-----ILLSKSIKMFVLDEADEML------------------SRGFKDQIYDIFQKLPSSTQVVLLSATMPADVLEVTKK-FMRDP-IRILVKKEELTLEGIRQFYINVEKEE---W-------KLETLCDLYETLTITQAVIFLNTRRKVDWLTEKMSSRDFTVSALHGDMEQKEREIIMKEFRSGSSRVLITTDILARGIDVQQVSLVINYDLPTNRENYIHRI 360          
BLAST of NO13G00580 vs. NCBI_GenBank
Match: XP_020784551.1 (eukaryotic initiation factor 4A-I isoform X1 [Boleophthalmus pectinirostris])

HSP 1 Score: 166.0 bits (419), Expect = 2.700e-37
Identity = 118/366 (32.24%), Postives = 186/366 (50.82%), Query Frame = 0
Query:    1 MRGIFSKGFEKPSECQKLGIKPLLDGKNMLLQAQSGHGKTAIFATAILNAIDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSPHVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGRDRFGPVIWLKNTKFLVLDEADEMLFDCRNPNGEAEHGGTAKDSSSNYVMLQGLARKLSPTTQIALCSATFSPETTKAAQEIFPRDAFVLITLQDHELNRANIQQFYVVMHRNDERVWLPELMQLKLSTMEKLVSIFANGQIYCFCTNKDQVEMV---MKANDYPGTRYTVNIE---------DFKAGRKTVLVCTNALARGLDVQAASVVINFDL-CDPQRYMQRI 354
            +RGI++ GFEKPS  Q+  I+P + G +++ QAQSG GKTA FA +IL  +D  +   +A QA+VL P R+LA+Q+   +++LG YL        C+G  +V+ E  R         L    PH++VGT GR+ D+   R     ++  K+ K  VLDEADEML                  S      +  + +KL  +TQ+ L SAT   +  +  ++ F RD  + I ++  EL    I+QFY+ + + +   W       KL T+  L       Q   F   + +V+ +   M + D+  +    ++E         +F++G   VL+ T+ LARG+DVQ  S+VIN+DL  + + Y+ RI
Sbjct:   42 LRGIYAYGFEKPSAIQQRAIRPCIQGSDVIAQAQSGTGKTATFAISILQKLDLSL---KATQALVLAPTRELAQQIRKVVDALGDYLG--ATCYACIGGTNVRQESQR---------LTEDVPHIVVGTPGRVFDMLSRR-----ILLSKSIKMFVLDEADEML------------------SRGFKDQIYDIFQKLPSSTQVVLLSATMPADVLEVTKK-FMRDP-IRILVKKEELTLEGIRQFYINVEKEE---W-------KLETLCDLYETLTITQAVIFLNTRRKVDWLTEKMSSRDFTVSALHGDMEQKEREIIMKEFRSGSSRVLITTDILARGIDVQQVSLVINYDLPTNRENYIHRI 358          
BLAST of NO13G00580 vs. NCBI_GenBank
Match: XP_004519345.1 (eukaryotic initiation factor 4A [Ceratitis capitata] >XP_011193023.1 PREDICTED: eukaryotic initiation factor 4A isoform X1 [Zeugodacus cucurbitae] >XP_011193024.1 PREDICTED: eukaryotic initiation factor 4A isoform X2 [Zeugodacus cucurbitae] >XP_014098551.1 PREDICTED: eukaryotic initiation factor 4A [Bactrocera oleae])

HSP 1 Score: 164.9 bits (416), Expect = 6.000e-37
Identity = 128/408 (31.37%), Postives = 195/408 (47.79%), Query Frame = 0
Query:    1 MRGIFSKGFEKPSECQKLGIKPLLDGKNMLLQAQSGHGKTAIFATAILNAIDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSPHVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGRDRFGPVIWLKNTKFLVLDEADEMLFDCRNPNGEAEHGGTAKDSSSNYVMLQGLARKLSPTTQIALCSATFSPETTKAAQEIFPRDAFVLITLQDHELNRANIQQFYVVMHRNDERVWLPELMQLKLSTMEKLVSIFANGQIYCFCTNKDQVEMVMKA------------NDYPGTRYTVNIEDFKAGRKTVLVCTNALARGLDVQAASVVINFDL-CDPQRYMQRIXXXXXXXXXXXXISLIPPYQVDKSSGRNYSIQHITEAYHNTI 396
            +RGI+  GFEKPS  Q+  I P + G++++ QAQSG GKTA F+ AIL  IDT + D    QA++L P R+LA Q+   + +LG+Y+   +    C+G  +V+ E+AR+              HV+VGT GR+ D+   +     V+   N K  VLDEADEML                  S      +Q + + L P  Q+ L SAT  P+  + ++  F RD  V I ++  EL    I+QFYV + + +   W       KL T+  L    +  Q   FC  + +V+ + +              D       V ++ F++G   VL+ T+ LARG+DVQ  S+VIN+DL  + + Y+ RI            I+ I       +      ++ I + YH TI
Sbjct:   42 LRGIYGYGFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAILQQIDTSIRD---CQALILAPTRELATQIQRVVMALGEYM--KVHSHACIGGTNVR-EDARNLESGC---------HVVVGTPGRVYDMINRK-----VLRTHNIKLFVLDEADEML------------------SRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR-CFMRDP-VSILVKKEELTLEGIKQFYVNVKQEN---W-------KLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMTNHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFI-------TDEDRRILKDIEQFYHTTI 392          
BLAST of NO13G00580 vs. NCBI_GenBank
Match: XP_006646878.1 (PREDICTED: eukaryotic initiation factor 4A-3 [Oryza brachyantha] >XP_006646879.1 PREDICTED: eukaryotic initiation factor 4A-3 [Oryza brachyantha])

HSP 1 Score: 164.9 bits (416), Expect = 6.000e-37
Identity = 123/367 (33.51%), Postives = 184/367 (50.14%), Query Frame = 0
Query:    1 MRGIFSKGFEKPSECQKLGIKPLLDGKNMLLQAQSGHGKTAIFATAILNAIDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSPHVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGRDRFGPVIWLKNTKFLVLDEADEMLFDCRNPNGEAEHGGTAKDSSSNYVMLQGLARKLSPTTQIALCSATFSPETTKAAQEIFPRDAFVLITLQDHELNRANIQQFYVVMHRNDERVWLPELMQLKLSTMEKLVSIFANGQIYCFCTNKDQVEMV---MKANDY----------PGTRYTVNIEDFKAGRKTVLVCTNALARGLDVQAASVVINFDL-CDPQRYMQRI 354
            +RGI++ GFEKPS  Q+ GI P   G +++ QAQSG GKTA F + IL  +D G+ +    QA+VL P R+LA+Q+   + +LG YL   +++  CVG   V+     D+RI       A+  HV+VGT GR+ D+   R    P     N K  VLDEADEML                  S      +  + + L P  Q+ + SAT  PE  +  ++   +   +L+  +  EL    I+QFYV + + D   W       KL T+  L    A  Q   F   + +V+ +   M++ D+            TR  + + +F++G   VL+ T+ LARG+DVQ  S+VIN+DL   P+ Y+ RI
Sbjct:   53 LRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVE---CQALVLAPTRELAQQIEKVMRALGDYLG--VKVHACVGGTSVR----EDQRIL------ASGVHVVVGTPGRVFDMLR-RQSLRP----DNIKMFVLDEADEML------------------SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILV--KRDELTLEGIKQFYVNVEKED---W-------KLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTR-DIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 368          
BLAST of NO13G00580 vs. NCBI_GenBank
Match: XP_017544268.1 (PREDICTED: eukaryotic initiation factor 4A-I [Pygocentrus nattereri])

HSP 1 Score: 164.9 bits (416), Expect = 6.000e-37
Identity = 121/366 (33.06%), Postives = 184/366 (50.27%), Query Frame = 0
Query:    1 MRGIFSKGFEKPSECQKLGIKPLLDGKNMLLQAQSGHGKTAIFATAILNAIDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSPHVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGRDRFGPVIWLKNTKFLVLDEADEMLFDCRNPNGEAEHGGTAKDSSSNYVMLQGLARKLSPTTQIALCSATFSPETTKAAQEIFPRDAFVLITLQDHELNRANIQQFYVVMHRNDERVWLPELMQLKLSTMEKLVSIFANGQIYCFCTNKDQVEMV---MKANDYPGTRY---------TVNIEDFKAGRKTVLVCTNALARGLDVQAASVVINFDL-CDPQRYMQRI 354
            +RGI++ GFEKPS  Q+  I P + G +++ QAQSG GKTA FA +IL  +D   P+  A QA+VL P R+LA+Q+   + +LG Y+        C+G  +V+ E A+         L+A  PH++VGT GR+ D+   +      +  KN K  VLDEADEML                  S      +  + +KL  +TQ+ L SAT   E  +   + F R+  V I ++  EL    I+QFY+ + + +   W       KL T+  L       Q   F   + +V+ +   M A D+  +            V + +F++G   VL+ T+ LARG+DVQ  S+VIN+DL  + + Y+ RI
Sbjct:   46 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQLD---PELRATQALVLAPTRELAQQIQKVVMALGDYMG--ATCHACIGGTNVRNEVAK---------LQAEAPHIVVGTPGRVFDMLSRK-----FLSSKNIKMFVLDEADEML------------------SRGFKDQIYEIFQKLPSSTQVVLLSATMPVEVLEVTTK-FMREP-VRILVKKDELTLEGIRQFYINVEKEE---W-------KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKDRDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI 362          
The following BLAST results are available for this feature:
BLAST of NO13G00580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21727.12.000e-4081.25eukaryotic initiation factor 4a, partial [Nannochl... [more]
CCG81005.17.100e-3832.24ATP-dependent RNA helicase eIF4A [Taphrina deforma... [more]
EQB77172.12.100e-3730.90eukaryotic translation initiation factor 4A, isofo... [more]
KXN71335.12.700e-3731.94DEAD-domain-containing protein [Conidiobolus coron... [more]
XP_017469413.12.700e-3731.62PREDICTED: eukaryotic initiation factor 4A [Rhagol... [more]
XP_020784552.12.700e-3732.24eukaryotic initiation factor 4A-I isoform X2 [Bole... [more]
XP_020784551.12.700e-3732.24eukaryotic initiation factor 4A-I isoform X1 [Bole... [more]
XP_004519345.16.000e-3731.37eukaryotic initiation factor 4A [Ceratitis capitat... [more]
XP_006646878.16.000e-3733.51PREDICTED: eukaryotic initiation factor 4A-3 [Oryz... [more]
XP_017544268.16.000e-3733.06PREDICTED: eukaryotic initiation factor 4A-I [Pygo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00580.1NO13G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00580.1NO13G00580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00580 ID=NO13G00580|Name=NO13G00580|organism=Nannochloropsis oceanica|type=gene|length=3519bp
ATGCGCGGTATCTTTTCCAAGGGCTTTGAAAAGCCGTCTGAGTGCCAGAA
GCTCGGCATCAAGgtgagagggaggatgggagggagggagggtgtgtggg
agggatgatggcaaggattgaatgggttccgattccttgagatttcctgt
gttatgtgagggactcatcaaacctcaacacccgcctcccctcactcctt
ccttccttccctccctcccccgcagCCCCTGCTCGACGGGAAAAACATGC
TTCTCCAGGCCCAGTCGGGGCATGGCAAGACGGCGATCTTCGCCACAGCC
ATCTTGAACGCCATCGACACCGgtaaagaggggagacggggagggaagga
gggagggaaggggcgcgagggcacaggcacccgtgggatgcgtcaagttc
cttacgcctttcctttctccctccctgcccctctccctttccctgtcttt
ttcccctcagGCGTGCCGGACAAGGAGGCCATCCAAGCCATCGTGCTTGT
GCCCAACCGCGATTTGGCTCGTCAAGTAACGGCCGAGATCGAGTCGCTGG
GGCAGTATTTGGACCCACCTgtagggagggggggagggagggagggaggg
agggagggagggagggagggaaagggaatacctcgaaccgcctggaggga
gaaagggaggaagaggacaagtgctgtgagcctcattgacgagggagaaa
cgattcctcgttcatacgagattttattcaccccttcccttcgtccctcc
cttcgtccctccctccctccctccctctttccctgcagCTGCGCATCCAA
TGCTGCGTGGGCTCGCCTCACGTCAAGACGGAGGAGGCCCGTGATGAGCG
TATTGCCTTGGTCAAGACCCTTAAGGCCACCCCTCCTCATGTTCTGGTGG
GGACTATGGGACGCATCTGCGACCTGGCAGAGgtacgggagggagggcga
gagggagggcgggagggagggtgggtagagggtgaaacagaagcagaata
aaagtagtagcgacaggacgaagatgacgacgaagggaaatgagggatga
aatcgctcaacacacctgctaccctcccttcctccctccctcccttcgtt
tccctagGGCCGTGATCGTTTCGGGCCTGTCATTTGGTTGAAGAACACTA
AGTTCCTCGTCCTGGACGAGGCGGACGAGATGTTGTTTGATTGCCGCAAT
CCCAATGGGGAGGCAGAACATGgtaagaagaagaactcacctccggatgt
ttgttaaattcaatggaagcactctgtgatatcccctcctggattgtacg
aaacattaatcgttcaatcatccccgtatgtcgaacaagagtacatttca
ggcaacctgatatttgtcaatatcctccccggctaattgtaatataaatc
aaattaaactcatgtaaatcaaattaaattaattacaggcggcgccgcca
aggactcctcaattgtaatataaatcaaattaaactcatgtaaatcaaat
taaattaattacaggcggcaccgccaaggactcctcaattgtaatataaa
tcaaattaaactcatgtaaatcaaattaaattaattacagGCGGCACCGC
CAAGGACTCCTCGTCCAACTACGTTATGCTGCAGGGATTGGCACGCAAGC
TCAGCCCCACCACGCAGgtgcgtcatccctcccgctttttgaatcacgtc
taaatataatatatgtacattatttattttttatgttgcatcttttcttt
tctctctcctcattgtcatcgtttcacctatcgtcactttcttctatccc
ttttctgccacccgttgatttatttgatcaccgcgtaactcaaccctcat
acttccctccctccctccctccctccctccctccctcctgtagATCGCCC
TGTGCTCCGCCACCTTCTCTCCCGAGACAACCAAAGCCGCCCAAGAGATT
TTCCCCCGGGATGCGTTCGTCCTCATCACCCTTCAAGACCATGAGCTAAA
CCGTGCCAACATCCAGCAGgtaggaagggagggagggaggtagggaggga
gggagggagggagcaagaaaatgataatgtatgagggatcaagtatattt
ttctgcatgaagtgtacagcatttcatctagtcttatccctctctccctc
cttcccttctttcctcactccctccagTTTTATGTGGTGATGCATCGCAA
TGACGAACGTGTGTGGCTGCCGGAGCTCATGCAGCTGAAGCTCTCCACCA
TGGAGAAGCTGGTATCCATCTTCGCCAACGGACAGATCTACTGCTTTTGT
ACCAATAAGgtaggtaggtagggagggagggagggtgggagggaaggagg
gagggacggacagttggtacatgctctgcagcgtttaggttacttaaaaa
ttgtcccatctttctccttttttccctcgttcgttcgggcttggatgttt
ctgtgacttgcgatacaaaactgacacctgaacccctcccttcctccctc
cctccctcccttcctccctcccttcctcttttttgacagGACCAAGTGGA
GATGGTGATGAAGGCGAACGACTACCCGGgtacgtaggaggggggaggga
gggaaggaatcaaggagggaaggaggaaaggaaggagggagaatcgtaca
gagcgtatagctaccctccttgtatccgaagtgacaaaagtagggcaaat
caaatggatgacttaccaccccccttccctccctcccttccgcccttcct
ccctccttccagGGACCCGCTACACCGTTAACATCGAGGACTTCAAGGCC
GGGCGCAAGACCGTGTTGGTCTGCACCAATGCCCTGGCCCGTGGCTTGGA
CGTGCAGGCGgtatgtagtgggaggggaggaaaggcgtttccttttttga
aaattcagttttgcgagatgtatatccatctatcgctccctccaacaaat
gcatttcccctccctccccctcctccttttctccctccctccctcccttc
ctttctccctctagGCCTCTGTCGTCATCAACTTCGACCTGTGTGACCCC
CAACGGTACATGCAACGGATCGGTCGCGTCGGCCGTTTCGGGCGCGCCGG
GACAGCCATTTCCCTCATACCTCCCTACCAGGTGGACAAGAGCAGTGGCC
GCAATTATTCCATTCAGCATATTACTGAGgtaggtcctccgtccctccat
tcctccctccttccttctttccttccgtccctacctttcctgtccaccgg
acccgcagcagccaccagctttcacgtgatgctcattcccgtcctccctc
cctccctccctccctccctccctcacccagGCGTACCACAACACCATCAA
CCGTTGGGACTTTCTCCAGGGTGATTACCCTCCCCGCGATCCTTTCGTGC
TGCAGCTGCCGGGCTTCGGAATCGAGCAAGACCTGCTGGATGGCTTGAAG
GAGGGCGGGAGGGAGGAGGGGGTGGATGGCTTGGCGGAGGGAGTAGCCGA
GATCACGGTGGGCAACTGA
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protein sequence of NO13G00580.1

>NO13G00580.1-protein ID=NO13G00580.1-protein|Name=NO13G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MRGIFSKGFEKPSECQKLGIKPLLDGKNMLLQAQSGHGKTAIFATAILNA
IDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSP
HVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGRDRFGPVIWLK
NTKFLVLDEADEMLFDCRNPNGEAEHGGTAKDSSSNYVMLQGLARKLSPT
TQIALCSATFSPETTKAAQEIFPRDAFVLITLQDHELNRANIQQFYVVMH
RNDERVWLPELMQLKLSTMEKLVSIFANGQIYCFCTNKDQVEMVMKANDY
PGTRYTVNIEDFKAGRKTVLVCTNALARGLDVQAASVVINFDLCDPQRYM
QRIGRVGRFGRAGTAISLIPPYQVDKSSGRNYSIQHITEAYHNTINRWDF
LQGDYPPRDPFVLQLPGFGIEQDLLDGLKEGGREEGVDGLAEGVAEITVG
N*
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