NO13G00580.1, NO13G00580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00580.1
Unique NameNO13G00580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1356
Alignment locationchr13:198137..201655 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:198137..201655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00580.1 vs.
Match: XP_020784551.1 (eukaryotic initiation factor 4A-I isoform X1 [Boleophthalmus pectinirostris])

HSP 1 Score: 189.5 bits (480), Expect = 2.300e-44
Identity = 134/407 (32.92%), Postives = 210/407 (51.60%), Query Frame = 0 
Query:    1 MRGIFSKGFEKPSECQKLGIKPLLDGKNMLLQAQSGHGKTAIFATAILNAIDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSPHVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGRDRFGPVIWLKNTKFLVLDEADEMLFDCRNPNGEAEHGGTAKDSSSNYVMLQGLARKLSPTTQIALCSATFSPETTKAAQEIFPRDAFVLITLQDHELNRANIQQFYVVMHRNDERVWLPELMQLKLSTMEKLVSIFANGQIYCFCTNKDQVEMV---MKANDYPGTRYTVNIE---------DFKAGRKTVLVCTNALARGLDVQAASVVINFDL-CDPQRYMQRIGRVGRFGRAGTAISLIPPYQVDKSSGRNYSIQHITEAYHNT 395
            +RGI++ GFEKPS  Q+  I+P + G +++ QAQSG GKTA FA +IL  +D  +   +A QA+VL P R+LA+Q+   +++LG YL        C+G  +V+ E  R         L    PH++VGT GR+ D+   R     ++  K+ K  VLDEADEML                  S      +  + +KL  +TQ+ L SAT   +  +  ++ F RD  + I ++  EL    I+QFY+ + + +   W       KL T+  L       Q   F   + +V+ +   M + D+  +    ++E         +F++G   VL+ T+ LARG+DVQ  S+VIN+DL  + + Y+ RIGR GRFGR G AI+++   + DK + R+       E ++NT
Sbjct:   42 LRGIYAYGFEKPSAIQQRAIRPCIQGSDVIAQAQSGTGKTATFAISILQKLDLSL---KATQALVLAPTRELAQQIRKVVDALGDYLG--ATCYACIGGTNVRQESQR---------LTEDVPHIVVGTPGRVFDMLSRR-----ILLSKSIKMFVLDEADEML------------------SRGFKDQIYDIFQKLPSSTQVVLLSATMPADVLEVTKK-FMRDP-IRILVKKEELTLEGIRQFYINVEKEE---W-------KLETLCDLYETLTITQAVIFLNTRRKVDWLTEKMSSRDFTVSALHGDMEQKEREIIMKEFRSGSSRVLITTDILARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT--EDDKRTLRD------IETFYNT 391
The following BLAST results are available for this feature:
BLAST of NO13G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_020784551.12.300e-4432.92eukaryotic initiation factor 4A-I isoform X1 [Bole... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00580NO13G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00580.1NO13G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00580.1.cds1NO13G00580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00580.1.cds2NO13G00580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00580.1.cds3NO13G00580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00580.1.cds4NO13G00580.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00580.1.cds5NO13G00580.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00580.1.cds6NO13G00580.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00580.1.cds7NO13G00580.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00580.1.cds8NO13G00580.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00580.1.cds9NO13G00580.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00580.1.cds10NO13G00580.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00580.1.cds11NO13G00580.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00580.1.cds12NO13G00580.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00580.1 ID=NO13G00580.1|Name=NO13G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
ATGCGCGGTATCTTTTCCAAGGGCTTTGAAAAGCCGTCTGAGTGCCAGAA
GCTCGGCATCAAGCCCCTGCTCGACGGGAAAAACATGCTTCTCCAGGCCC
AGTCGGGGCATGGCAAGACGGCGATCTTCGCCACAGCCATCTTGAACGCC
ATCGACACCGGCGTGCCGGACAAGGAGGCCATCCAAGCCATCGTGCTTGT
GCCCAACCGCGATTTGGCTCGTCAAGTAACGGCCGAGATCGAGTCGCTGG
GGCAGTATTTGGACCCACCTCTGCGCATCCAATGCTGCGTGGGCTCGCCT
CACGTCAAGACGGAGGAGGCCCGTGATGAGCGTATTGCCTTGGTCAAGAC
CCTTAAGGCCACCCCTCCTCATGTTCTGGTGGGGACTATGGGACGCATCT
GCGACCTGGCAGAGGGCCGTGATCGTTTCGGGCCTGTCATTTGGTTGAAG
AACACTAAGTTCCTCGTCCTGGACGAGGCGGACGAGATGTTGTTTGATTG
CCGCAATCCCAATGGGGAGGCAGAACATGGCGGCACCGCCAAGGACTCCT
CGTCCAACTACGTTATGCTGCAGGGATTGGCACGCAAGCTCAGCCCCACC
ACGCAGATCGCCCTGTGCTCCGCCACCTTCTCTCCCGAGACAACCAAAGC
CGCCCAAGAGATTTTCCCCCGGGATGCGTTCGTCCTCATCACCCTTCAAG
ACCATGAGCTAAACCGTGCCAACATCCAGCAGTTTTATGTGGTGATGCAT
CGCAATGACGAACGTGTGTGGCTGCCGGAGCTCATGCAGCTGAAGCTCTC
CACCATGGAGAAGCTGGTATCCATCTTCGCCAACGGACAGATCTACTGCT
TTTGTACCAATAAGGACCAAGTGGAGATGGTGATGAAGGCGAACGACTAC
CCGGGGACCCGCTACACCGTTAACATCGAGGACTTCAAGGCCGGGCGCAA
GACCGTGTTGGTCTGCACCAATGCCCTGGCCCGTGGCTTGGACGTGCAGG
CGGCCTCTGTCGTCATCAACTTCGACCTGTGTGACCCCCAACGGTACATG
CAACGGATCGGTCGCGTCGGCCGTTTCGGGCGCGCCGGGACAGCCATTTC
CCTCATACCTCCCTACCAGGTGGACAAGAGCAGTGGCCGCAATTATTCCA
TTCAGCATATTACTGAGGCGTACCACAACACCATCAACCGTTGGGACTTT
CTCCAGGGTGATTACCCTCCCCGCGATCCTTTCGTGCTGCAGCTGCCGGG
CTTCGGAATCGAGCAAGACCTGCTGGATGGCTTGAAGGAGGGCGGGAGGG
AGGAGGGGGTGGATGGCTTGGCGGAGGGAGTAGCCGAGATCACGGTGGGC
AACTGA
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protein sequence of NO13G00580.1

>NO13G00580.1-protein ID=NO13G00580.1-protein|Name=NO13G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MRGIFSKGFEKPSECQKLGIKPLLDGKNMLLQAQSGHGKTAIFATAILNA
IDTGVPDKEAIQAIVLVPNRDLARQVTAEIESLGQYLDPPLRIQCCVGSP
HVKTEEARDERIALVKTLKATPPHVLVGTMGRICDLAEGRDRFGPVIWLK
NTKFLVLDEADEMLFDCRNPNGEAEHGGTAKDSSSNYVMLQGLARKLSPT
TQIALCSATFSPETTKAAQEIFPRDAFVLITLQDHELNRANIQQFYVVMH
RNDERVWLPELMQLKLSTMEKLVSIFANGQIYCFCTNKDQVEMVMKANDY
PGTRYTVNIEDFKAGRKTVLVCTNALARGLDVQAASVVINFDLCDPQRYM
QRIGRVGRFGRAGTAISLIPPYQVDKSSGRNYSIQHITEAYHNTINRWDF
LQGDYPPRDPFVLQLPGFGIEQDLLDGLKEGGREEGVDGLAEGVAEITVG
N*
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mRNA from alignment at chr13:198137..201655+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00580.1 ID=NO13G00580.1|Name=NO13G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=3519bp|location=Sequence derived from alignment at chr13:198137..201655+ (Nannochloropsis oceanica)
ATGCGCGGTATCTTTTCCAAGGGCTTTGAAAAGCCGTCTGAGTGCCAGAA
GCTCGGCATCAAGGTGAGAGGGAGGATGGGAGGGAGGGAGGGTGTGTGGG
AGGGATGATGGCAAGGATTGAATGGGTTCCGATTCCTTGAGATTTCCTGT
GTTATGTGAGGGACTCATCAAACCTCAACACCCGCCTCCCCTCACTCCTT
CCTTCCTTCCCTCCCTCCCCCGCAGCCCCTGCTCGACGGGAAAAACATGC
TTCTCCAGGCCCAGTCGGGGCATGGCAAGACGGCGATCTTCGCCACAGCC
ATCTTGAACGCCATCGACACCGGTAAAGAGGGGAGACGGGGAGGGAAGGA
GGGAGGGAAGGGGCGCGAGGGCACAGGCACCCGTGGGATGCGTCAAGTTC
CTTACGCCTTTCCTTTCTCCCTCCCTGCCCCTCTCCCTTTCCCTGTCTTT
TTCCCCTCAGGCGTGCCGGACAAGGAGGCCATCCAAGCCATCGTGCTTGT
GCCCAACCGCGATTTGGCTCGTCAAGTAACGGCCGAGATCGAGTCGCTGG
GGCAGTATTTGGACCCACCTGTAGGGAGGGGGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAAAGGGAATACCTCGAACCGCCTGGAGGGA
GAAAGGGAGGAAGAGGACAAGTGCTGTGAGCCTCATTGACGAGGGAGAAA
CGATTCCTCGTTCATACGAGATTTTATTCACCCCTTCCCTTCGTCCCTCC
CTTCGTCCCTCCCTCCCTCCCTCCCTCTTTCCCTGCAGCTGCGCATCCAA
TGCTGCGTGGGCTCGCCTCACGTCAAGACGGAGGAGGCCCGTGATGAGCG
TATTGCCTTGGTCAAGACCCTTAAGGCCACCCCTCCTCATGTTCTGGTGG
GGACTATGGGACGCATCTGCGACCTGGCAGAGGTACGGGAGGGAGGGCGA
GAGGGAGGGCGGGAGGGAGGGTGGGTAGAGGGTGAAACAGAAGCAGAATA
AAAGTAGTAGCGACAGGACGAAGATGACGACGAAGGGAAATGAGGGATGA
AATCGCTCAACACACCTGCTACCCTCCCTTCCTCCCTCCCTCCCTTCGTT
TCCCTAGGGCCGTGATCGTTTCGGGCCTGTCATTTGGTTGAAGAACACTA
AGTTCCTCGTCCTGGACGAGGCGGACGAGATGTTGTTTGATTGCCGCAAT
CCCAATGGGGAGGCAGAACATGGTAAGAAGAAGAACTCACCTCCGGATGT
TTGTTAAATTCAATGGAAGCACTCTGTGATATCCCCTCCTGGATTGTACG
AAACATTAATCGTTCAATCATCCCCGTATGTCGAACAAGAGTACATTTCA
GGCAACCTGATATTTGTCAATATCCTCCCCGGCTAATTGTAATATAAATC
AAATTAAACTCATGTAAATCAAATTAAATTAATTACAGGCGGCGCCGCCA
AGGACTCCTCAATTGTAATATAAATCAAATTAAACTCATGTAAATCAAAT
TAAATTAATTACAGGCGGCACCGCCAAGGACTCCTCAATTGTAATATAAA
TCAAATTAAACTCATGTAAATCAAATTAAATTAATTACAGGCGGCACCGC
CAAGGACTCCTCGTCCAACTACGTTATGCTGCAGGGATTGGCACGCAAGC
TCAGCCCCACCACGCAGGTGCGTCATCCCTCCCGCTTTTTGAATCACGTC
TAAATATAATATATGTACATTATTTATTTTTTATGTTGCATCTTTTCTTT
TCTCTCTCCTCATTGTCATCGTTTCACCTATCGTCACTTTCTTCTATCCC
TTTTCTGCCACCCGTTGATTTATTTGATCACCGCGTAACTCAACCCTCAT
ACTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTGTAGATCGCCC
TGTGCTCCGCCACCTTCTCTCCCGAGACAACCAAAGCCGCCCAAGAGATT
TTCCCCCGGGATGCGTTCGTCCTCATCACCCTTCAAGACCATGAGCTAAA
CCGTGCCAACATCCAGCAGGTAGGAAGGGAGGGAGGGAGGTAGGGAGGGA
GGGAGGGAGGGAGCAAGAAAATGATAATGTATGAGGGATCAAGTATATTT
TTCTGCATGAAGTGTACAGCATTTCATCTAGTCTTATCCCTCTCTCCCTC
CTTCCCTTCTTTCCTCACTCCCTCCAGTTTTATGTGGTGATGCATCGCAA
TGACGAACGTGTGTGGCTGCCGGAGCTCATGCAGCTGAAGCTCTCCACCA
TGGAGAAGCTGGTATCCATCTTCGCCAACGGACAGATCTACTGCTTTTGT
ACCAATAAGGTAGGTAGGTAGGGAGGGAGGGAGGGTGGGAGGGAAGGAGG
GAGGGACGGACAGTTGGTACATGCTCTGCAGCGTTTAGGTTACTTAAAAA
TTGTCCCATCTTTCTCCTTTTTTCCCTCGTTCGTTCGGGCTTGGATGTTT
CTGTGACTTGCGATACAAAACTGACACCTGAACCCCTCCCTTCCTCCCTC
CCTCCCTCCCTTCCTCCCTCCCTTCCTCTTTTTTGACAGGACCAAGTGGA
GATGGTGATGAAGGCGAACGACTACCCGGGTACGTAGGAGGGGGGAGGGA
GGGAAGGAATCAAGGAGGGAAGGAGGAAAGGAAGGAGGGAGAATCGTACA
GAGCGTATAGCTACCCTCCTTGTATCCGAAGTGACAAAAGTAGGGCAAAT
CAAATGGATGACTTACCACCCCCCTTCCCTCCCTCCCTTCCGCCCTTCCT
CCCTCCTTCCAGGGACCCGCTACACCGTTAACATCGAGGACTTCAAGGCC
GGGCGCAAGACCGTGTTGGTCTGCACCAATGCCCTGGCCCGTGGCTTGGA
CGTGCAGGCGGTATGTAGTGGGAGGGGAGGAAAGGCGTTTCCTTTTTTGA
AAATTCAGTTTTGCGAGATGTATATCCATCTATCGCTCCCTCCAACAAAT
GCATTTCCCCTCCCTCCCCCTCCTCCTTTTCTCCCTCCCTCCCTCCCTTC
CTTTCTCCCTCTAGGCCTCTGTCGTCATCAACTTCGACCTGTGTGACCCC
CAACGGTACATGCAACGGATCGGTCGCGTCGGCCGTTTCGGGCGCGCCGG
GACAGCCATTTCCCTCATACCTCCCTACCAGGTGGACAAGAGCAGTGGCC
GCAATTATTCCATTCAGCATATTACTGAGGTAGGTCCTCCGTCCCTCCAT
TCCTCCCTCCTTCCTTCTTTCCTTCCGTCCCTACCTTTCCTGTCCACCGG
ACCCGCAGCAGCCACCAGCTTTCACGTGATGCTCATTCCCGTCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCACCCAGGCGTACCACAACACCATCAA
CCGTTGGGACTTTCTCCAGGGTGATTACCCTCCCCGCGATCCTTTCGTGC
TGCAGCTGCCGGGCTTCGGAATCGAGCAAGACCTGCTGGATGGCTTGAAG
GAGGGCGGGAGGGAGGAGGGGGTGGATGGCTTGGCGGAGGGAGTAGCCGA
GATCACGGTGGGCAACTGA
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Coding sequence (CDS) from alignment at chr13:198137..201655+

>NO13G00580.1 ID=NO13G00580.1|Name=NO13G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at chr13:198137..201655+ (Nannochloropsis oceanica)
ATGCGCGGTATCTTTTCCAAGGGCTTTGAAAAGCCGTCTGAGTGCCAGAA
GCTCGGCATCAAGCCCCTGCTCGACGGGAAAAACATGCTTCTCCAGGCCC
AGTCGGGGCATGGCAAGACGGCGATCTTCGCCACAGCCATCTTGAACGCC
ATCGACACCGGCGTGCCGGACAAGGAGGCCATCCAAGCCATCGTGCTTGT
GCCCAACCGCGATTTGGCTCGTCAAGTAACGGCCGAGATCGAGTCGCTGG
GGCAGTATTTGGACCCACCTCTGCGCATCCAATGCTGCGTGGGCTCGCCT
CACGTCAAGACGGAGGAGGCCCGTGATGAGCGTATTGCCTTGGTCAAGAC
CCTTAAGGCCACCCCTCCTCATGTTCTGGTGGGGACTATGGGACGCATCT
GCGACCTGGCAGAGGGCCGTGATCGTTTCGGGCCTGTCATTTGGTTGAAG
AACACTAAGTTCCTCGTCCTGGACGAGGCGGACGAGATGTTGTTTGATTG
CCGCAATCCCAATGGGGAGGCAGAACATGGCGGCACCGCCAAGGACTCCT
CGTCCAACTACGTTATGCTGCAGGGATTGGCACGCAAGCTCAGCCCCACC
ACGCAGATCGCCCTGTGCTCCGCCACCTTCTCTCCCGAGACAACCAAAGC
CGCCCAAGAGATTTTCCCCCGGGATGCGTTCGTCCTCATCACCCTTCAAG
ACCATGAGCTAAACCGTGCCAACATCCAGCAGTTTTATGTGGTGATGCAT
CGCAATGACGAACGTGTGTGGCTGCCGGAGCTCATGCAGCTGAAGCTCTC
CACCATGGAGAAGCTGGTATCCATCTTCGCCAACGGACAGATCTACTGCT
TTTGTACCAATAAGGACCAAGTGGAGATGGTGATGAAGGCGAACGACTAC
CCGGGGACCCGCTACACCGTTAACATCGAGGACTTCAAGGCCGGGCGCAA
GACCGTGTTGGTCTGCACCAATGCCCTGGCCCGTGGCTTGGACGTGCAGG
CGGCCTCTGTCGTCATCAACTTCGACCTGTGTGACCCCCAACGGTACATG
CAACGGATCGGTCGCGTCGGCCGTTTCGGGCGCGCCGGGACAGCCATTTC
CCTCATACCTCCCTACCAGGTGGACAAGAGCAGTGGCCGCAATTATTCCA
TTCAGCATATTACTGAGGCGTACCACAACACCATCAACCGTTGGGACTTT
CTCCAGGGTGATTACCCTCCCCGCGATCCTTTCGTGCTGCAGCTGCCGGG
CTTCGGAATCGAGCAAGACCTGCTGGATGGCTTGAAGGAGGGCGGGAGGG
AGGAGGGGGTGGATGGCTTGGCGGAGGGAGTAGCCGAGATCACGGTGGGC
AACTGA
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Synonyms
Publications