NO13G00510, NO13G00510 (gene) Nannochloropsis oceanica

Overview
NameNO13G00510
Unique NameNO13G00510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length485
Alignment locationchr13:178042..178526 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:178042..178526 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0016740transferase activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR029040RPABC4/Spt4
IPR006591RNAP_P/RPABC4
Homology
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: ORZ25410.1 (DNA directed RNA polymerase [Absidia repens])

HSP 1 Score: 76.6 bits (187), Expect = 4.100e-11
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 0 
Query:   37 RSEVMGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            R  V+ ++Y+C DCGA+N +K ++PIRC+ C HRIMYK RTKR+VQFEAR
Sbjct:   10 RQPVVAMSYICADCGAENQLKPREPIRCQDCGHRIMYKKRTKRMVQFEAR 59
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: XP_007302878.1 (DNA-directed RNA polymerase I [Stereum hirsutum FP-91666 SS1] >EIM88219.1 DNA-directed RNA polymerase I [Stereum hirsutum FP-91666 SS1])

HSP 1 Score: 76.6 bits (187), Expect = 4.100e-11
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            YLC DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   26 YLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 67
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: XP_007315501.1 (hypothetical protein SERLADRAFT_460779 [Serpula lacrymans var. lacrymans S7.9] >EGO27410.1 hypothetical protein SERLADRAFT_460779 [Serpula lacrymans var. lacrymans S7.9])

HSP 1 Score: 75.9 bits (185), Expect = 7.000e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            Y+C DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   27 YICADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 68
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: XP_007862542.1 (hypothetical protein GLOTRDRAFT_98520 [Gloeophyllum trabeum ATCC 11539] >EPQ59598.1 hypothetical protein GLOTRDRAFT_98520 [Gloeophyllum trabeum ATCC 11539])

HSP 1 Score: 75.9 bits (185), Expect = 7.000e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            Y+C DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   30 YICADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 71
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: KIJ19931.1 (hypothetical protein PAXINDRAFT_174487 [Paxillus involutus ATCC 200175])

HSP 1 Score: 75.9 bits (185), Expect = 7.000e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            Y+C DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   24 YICADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 65
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: KIJ70280.1 (hypothetical protein HYDPIDRAFT_104964 [Hydnomerulius pinastri MD-312])

HSP 1 Score: 75.9 bits (185), Expect = 7.000e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            Y+C DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   26 YICADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 67
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: KIK30500.1 (hypothetical protein PISMIDRAFT_297037 [Pisolithus microcarpus 441])

HSP 1 Score: 75.9 bits (185), Expect = 7.000e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            Y+C DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   27 YICADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 68
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: KIK48747.1 (hypothetical protein CY34DRAFT_581695 [Suillus luteus UH-Slu-Lm8-n1])

HSP 1 Score: 75.9 bits (185), Expect = 7.000e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            Y+C DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   26 YICADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 67
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: KIK90989.1 (hypothetical protein PAXRUDRAFT_654927 [Paxillus rubicundulus Ve08.2h10])

HSP 1 Score: 75.9 bits (185), Expect = 7.000e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            Y+C DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   26 YICADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 67
[Close]
BLAST of NO13G00510 vs. NCBI_GenBank
Match: KIO12774.1 (hypothetical protein M404DRAFT_693914 [Pisolithus tinctorius Marx 270])

HSP 1 Score: 75.9 bits (185), Expect = 7.000e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   45 YLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 87
            Y+C DCGA+N IK+++PIRCR+C HRIMYK RTKR+VQFEAR
Sbjct:   27 YICADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 68
The following BLAST results are available for this feature:
BLAST of NO13G00510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ORZ25410.14.100e-1162.00DNA directed RNA polymerase [Absidia repens][more]
XP_007302878.14.100e-1176.19DNA-directed RNA polymerase I [Stereum hirsutum FP... [more]
XP_007315501.17.000e-1173.81hypothetical protein SERLADRAFT_460779 [Serpula la... [more]
XP_007862542.17.000e-1173.81hypothetical protein GLOTRDRAFT_98520 [Gloeophyllu... [more]
KIJ19931.17.000e-1173.81hypothetical protein PAXINDRAFT_174487 [Paxillus i... [more]
KIJ70280.17.000e-1173.81hypothetical protein HYDPIDRAFT_104964 [Hydnomerul... [more]
KIK30500.17.000e-1173.81hypothetical protein PISMIDRAFT_297037 [Pisolithus... [more]
KIK48747.17.000e-1173.81hypothetical protein CY34DRAFT_581695 [Suillus lut... [more]
KIK90989.17.000e-1173.81hypothetical protein PAXRUDRAFT_654927 [Paxillus r... [more]
KIO12774.17.000e-1173.81hypothetical protein M404DRAFT_693914 [Pisolithus ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR057ngnoR057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001854NSK001854Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00510.1NO13G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596947gene_6965Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100160g2gene7561Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00510.1NO13G00510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00510 ID=NO13G00510|Name=NO13G00510|organism=Nannochloropsis oceanica|type=gene|length=485bp
ATGTCGAGCGCAGGCGGCGGGGTCTACGGAAACTACGGTGCAGGGGCAGG
TGCGGGAGGCGGCGAGGCGGGTCTTGGCCTTGGGGCTGGGACAGGTGGAG
GCATGGCGCGGAGTGAAGTGATGGGTGTGACTTATTTGTGTGGGGgtacg
tcgtaaagtgcgggtggagggaggcggggaacagggagggaaggtcagag
gtcgccggcgctgaacacagtgtcacagtatagaggcggtgaatagttgg
cctgtgcatgtacgtgctacgtggttgtgtccttgctttgtatttatacg
cgcataactgatattgccctcccctcccctcactcgctccgtccctcccc
cccttctctcatttccaagACTGCGGTGCCCAAAATGTGATCAAGAACAA
AGATCCCATTCGATGCCGGCAATGCAACCACCGTATCATGTACAAGATGC
GAACGAAGCGTGTGGTCCAGTTTGAGGCACGGTAG
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protein sequence of NO13G00510.1

>NO13G00510.1-protein ID=NO13G00510.1-protein|Name=NO13G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MSSAGGGVYGNYGAGAGAGGGEAGLGLGAGTGGGMARSEVMGVTYLCGDC
GAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR*
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Synonyms
Publications