NO12G03930, NO12G03930 (gene) Nannochloropsis oceanica

Overview
NameNO12G03930
Unique NameNO12G03930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3326
Alignment locationchr12:1127976..1131301 -

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Properties
Property NameValue
DescriptionCCR4-NOT transcription complex subunit 7/8
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1127976..1131301 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR006941RNase_CAF1
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003676nucleic acid binding
Homology
BLAST of NO12G03930 vs. NCBI_GenBank
Match: XP_016613085.1 (hypothetical protein SPPG_00723 [Spizellomyces punctatus DAOM BR117] >KND05046.1 hypothetical protein SPPG_00723 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 367.9 bits (943), Expect = 5.100e-98
Identity = 167/253 (66.01%), Postives = 209/253 (82.61%), Query Frame = 0
Query:  149 IREVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDV-TAADYQYKTLKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGL 401
            +REVW  NL+ EM  +R++VERYPY++MDTEFPGVVARP+G+  T+ADY Y+TL+CNVDLLKIIQLG++FAD EGN PP   TWQ NFKF+L+DDMYA+DSI+LL +SGIDF K+E +GIDV  FGELL++SG VL+DDV+W+SFHSGYDFGYLLK+LTC  LPA+E+ FFDLLR YFPC YDIKYLM +C  L GGLQ +A++L +AR+GP HQAGSDSLLT++TFF++    F+    + D KF G L+GL
Sbjct:   19 VREVWDSNLEDEMAVLRDLVERYPYLSMDTEFPGVVARPIGNFRTSADYHYQTLRCNVDLLKIIQLGITFADEEGNHPPGVCTWQFNFKFNLSDDMYAQDSIDLLTKSGIDFKKNEEYGIDVEHFGELLISSGFVLLDDVKWVSFHSGYDFGYLLKILTCQPLPAEESDFFDLLRIYFPCIYDIKYLMKSCKNLKGGLQDVADDLQIARVGPQHQAGSDSLLTSKTFFKMRQTFFD--DRIDDSKFLGYLYGL 269          
BLAST of NO12G03930 vs. NCBI_GenBank
Match: CDH54244.1 (ccr4-not transcription complex subunit 7 [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 365.9 bits (938), Expect = 1.900e-97
Identity = 170/268 (63.43%), Postives = 215/268 (80.22%), Query Frame = 0
Query:  149 IREVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDV-TAADYQYKTLKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGLGHNHTVYRNKMQATN 416
            I+EVW ENL+ EM  +R++VE YPY+AMDTEFPGVVARP+G   T++DY Y+TL+CNVD+LKIIQLG++FAD  GN P +  TWQ NFKFSL++DMYA+DSIELL +SGIDF KHE HGIDV  FGELL++SG VL++DV+WISFHSGYDFGYLLK+LTCS +PADE  FF++LR YFPC YDIKYLM +C  L GGLQ IA++L VAR+GP HQAGSDSLLT  TFF++  + F+    + D+K+ G L+GL  + +  ++  QAT+
Sbjct:    9 IKEVWSENLEEEMAHLRDLVEEYPYLAMDTEFPGVVARPIGTFRTSSDYHYQTLRCNVDVLKIIQLGITFADEHGNIPRNICTWQFNFKFSLSEDMYAQDSIELLTKSGIDFKKHEEHGIDVEHFGELLISSGFVLLEDVKWISFHSGYDFGYLLKLLTCSPMPADETEFFEILRLYFPCIYDIKYLMRSCKNLKGGLQDIADDLQVARVGPQHQAGSDSLLTCTTFFKMRQMFFD--DRIDDQKYLGYLYGLRSSPSAVQSLTQATS 274          
BLAST of NO12G03930 vs. NCBI_GenBank
Match: ORY99279.1 (ribonuclease H-like domain-containing protein [Syncephalastrum racemosum])

HSP 1 Score: 365.9 bits (938), Expect = 1.900e-97
Identity = 173/269 (64.31%), Postives = 218/269 (81.04%), Query Frame = 0
Query:  149 IREVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDV-TAADYQYKTLKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGLGHN-HTVYRNKMQATN 416
            I+EVW +NL+ EM  +R++VE +PY+AMDTEFPGVVARP+G   T++DY Y+TL+CNVDLLKIIQLG++FAD  GN P +  TWQ NFKF+L+DDMYA+DSIELL +SGIDF +HE  GIDV  FGELL++SG VL+DDV+WISFHSGYDFGYLLK+LTCS++PADE+ FFDLLR YFPC YDIKYLM +C  L GGLQ IA++L V+RIGP HQAGSDSLLT  TFF++  V F+    + D+K+ G LFGL ++  +  ++ +QATN
Sbjct:    9 IKEVWADNLEEEMEYLRDLVEEFPYLAMDTEFPGVVARPIGTFRTSSDYHYQTLRCNVDLLKIIQLGVTFADEHGNLPRNVCTWQFNFKFNLSDDMYAQDSIELLTKSGIDFKRHEEDGIDVEHFGELLISSGFVLLDDVKWISFHSGYDFGYLLKLLTCSSMPADESEFFDLLRIYFPCIYDIKYLMRSCKNLKGGLQDIADDLQVSRIGPQHQAGSDSLLTCSTFFKMRAVFFD--DRIDDQKYLGYLFGLKNSTSSSVQSLVQATN 275          
BLAST of NO12G03930 vs. NCBI_GenBank
Match: EXX67656.1 (Pop2p [Rhizophagus irregularis DAOM 197198w] >GBC21301.1 CCR4-NOT transcription complex subunit 7/8 [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 365.5 bits (937), Expect = 2.500e-97
Identity = 172/254 (67.72%), Postives = 207/254 (81.50%), Query Frame = 0
Query:  149 IREVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDV-TAADYQYKTLKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGLG 402
            I+EVW ENL+ EM  +R+ VE+YP++AMDTEFPGVVARP+G+  T++DY Y+TL+CNVDLLKIIQLG++FAD  G  PPD  TWQ NFKF+L  DMYA+DSI+LL +SGIDF KHE +GIDV  FGELL++SG VL+DDV+WISFHSGYDFGYLLKVLTCS LPA+E+ FFDLLRTYFPC YDIKYLM +   L GGLQ IA++L V+RIGP HQAGSDSLLTA TFF++    FN    + D K+ G L+GLG
Sbjct:   10 IKEVWAENLEEEMAILRDRVEQYPFLAMDTEFPGVVARPIGNFRTSSDYHYQTLRCNVDLLKIIQLGITFADENGTLPPDTCTWQFNFKFNLGGDMYAQDSIDLLTKSGIDFKKHEDYGIDVEHFGELLISSGFVLLDDVKWISFHSGYDFGYLLKVLTCSPLPAEESEFFDLLRTYFPCIYDIKYLMKSFKNLKGGLQDIADDLQVSRIGPQHQAGSDSLLTATTFFKMRQTFFN--DKIDDTKYLGYLYGLG 261          
BLAST of NO12G03930 vs. NCBI_GenBank
Match: ORY52966.1 (ribonuclease CAF1 [Rhizoclosmatium globosum])

HSP 1 Score: 365.2 bits (936), Expect = 3.300e-97
Identity = 164/253 (64.82%), Postives = 211/253 (83.40%), Query Frame = 0
Query:  149 IREVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDV-TAADYQYKTLKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGL 401
            I++VW   L+ EM  +RE+VERYP ++MDTEFPGVVARP+G+  T+ADYQY+TL+CNVDLLKIIQLG++FAD  GN+PP+  TWQ NFKF+LN+DMYA+DSI+LL +SGIDF KHE +GIDV  FGELL++SG VL+DDV+WISFHSGYDFGYLLKV TC+ LPA+E+ FF+L++ YFPC YDIKYLM +C  L GGLQ +A++L ++RIGP HQAGSDSLLT++TFF++    F+   ++ DEK+ G L+GL
Sbjct:    9 IKDVWAHTLEAEMAVLRELVERYPCISMDTEFPGVVARPIGNFKTSADYQYQTLRCNVDLLKIIQLGITFADENGNTPPNTCTWQFNFKFNLNEDMYAQDSIDLLTKSGIDFKKHEEYGIDVEHFGELLISSGFVLLDDVKWISFHSGYDFGYLLKVATCAPLPAEESDFFELMKLYFPCVYDIKYLMKSCKNLKGGLQDVADDLQISRIGPQHQAGSDSLLTSKTFFKMRETFFD--DHIDDEKYMGYLYGL 259          
BLAST of NO12G03930 vs. NCBI_GenBank
Match: XP_006680570.1 (hypothetical protein BATDEDRAFT_90073 [Batrachochytrium dendrobatidis JAM81] >EGF79089.1 hypothetical protein BATDEDRAFT_90073 [Batrachochytrium dendrobatidis JAM81] >OAJ42206.1 hypothetical protein BDEG_25694 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 363.2 bits (931), Expect = 1.200e-96
Identity = 165/253 (65.22%), Postives = 209/253 (82.61%), Query Frame = 0
Query:  149 IREVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDV-TAADYQYKTLKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGL 401
            +++VW  NL+ EM  IR++VE YP+VAMDTEFPGVVARP+G+  T++DY Y+TL+CNVDLLKIIQLGL+F+D+ GN PP   TWQ NFKFSL+DDMYA+DSI+LL +SGIDF KHE +GI V +FGEL+++SGLVL+DDV+WISFHSGYDFGYLLKV+TC  LPA+E  FF+LL+ YFPC YD+K+LM +C  L GGLQ +A+EL VAR+GP HQAGSDSLLT++TFF++  + F     + DEK+ G LFGL
Sbjct:    6 VQDVWAANLEKEMAVIRDIVELYPFVAMDTEFPGVVARPIGNFRTSSDYHYQTLRCNVDLLKIIQLGLTFSDSHGNLPPGRTTWQFNFKFSLSDDMYAQDSIDLLTKSGIDFKKHEKYGISVEQFGELMISSGLVLLDDVKWISFHSGYDFGYLLKVVTCQELPAEETAFFELLKLYFPCIYDVKFLMRSCKNLKGGLQDVADELQVARVGPQHQAGSDSLLTSKTFFKMRQLYFE--DTIDDEKYLGCLFGL 256          
BLAST of NO12G03930 vs. NCBI_GenBank
Match: XP_023471704.1 (ribonuclease CAF1 [Rhizopus microsporus ATCC 52813] >CEI89573.1 Putative CCR4-NOT transcription complex subunit 7 [Rhizopus microsporus] >ORE10649.1 ribonuclease CAF1 [Rhizopus microsporus var. microsporus] >PHZ17996.1 ribonuclease CAF1 [Rhizopus microsporus ATCC 52813])

HSP 1 Score: 362.8 bits (930), Expect = 1.600e-96
Identity = 169/246 (68.70%), Postives = 202/246 (82.11%), Query Frame = 0
Query:  149 IREVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDV-TAADYQYKTLKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKF 394
            I+EVW ENL+ EM  +R++VE YPY+AMDTEFPGVVARP+G   T++DY Y+TL+CNVDLLKIIQLG++FAD  GN P +  TWQ NFKFSL DDMYA+DSIELL +SGIDF KHE +GIDV  FGELL++SG VL+DDV+WISFHSGYDFGYLLK+LTCS +PADE+ FFDLLRTYFPC YDIKYLM +C  L GGLQ IA++L VARIGP HQAGSDSLLT  TFF++  + F     + D+K+
Sbjct:    9 IKEVWAENLEEEMAYLRDLVEDYPYLAMDTEFPGVVARPIGSFKTSSDYHYQTLRCNVDLLKIIQLGVTFADQHGNLPGNVCTWQFNFKFSLTDDMYAQDSIELLTKSGIDFKKHEEYGIDVEHFGELLISSGFVLLDDVKWISFHSGYDFGYLLKILTCSVMPADESEFFDLLRTYFPCIYDIKYLMKSCKNLKGGLQDIADDLQVARIGPQHQAGSDSLLTCTTFFKMRQMFFE--DKIDDQKY 252          
BLAST of NO12G03930 vs. NCBI_GenBank
Match: CDH53595.1 (caf1 family protein [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 362.5 bits (929), Expect = 2.100e-96
Identity = 168/268 (62.69%), Postives = 217/268 (80.97%), Query Frame = 0
Query:  149 IREVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDV-TAADYQYKTLKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGLGHNHTVYRNKMQATN 416
            IREVW +NL+ EM  +R++VE YPY+AMDTEFPGVVARP+G   T++DY Y+TL+CNVDLLKIIQLG++FAD  GN P +  TWQ NFKF++ DDMYA+DSIELL +SGIDF KH+ +GIDV +FGELL++SG VL+DDV+WISFHSGYDFGYLLK+LTC+++PADE+ FF++LR YFPC YDIKYLM +C  L GGLQ IA++L VAR+GP HQAGSDSLLT  TFF++  + F+    + D+K+ G L+GL  + +  +  +QAT+
Sbjct:    9 IREVWADNLEEEMAYLRDLVEDYPYLAMDTEFPGVVARPIGTFRTSSDYHYQTLRCNVDLLKIIQLGVTFADEHGNLPRNVCTWQFNFKFNIADDMYAQDSIELLTKSGIDFQKHDEYGIDVEQFGELLISSGFVLLDDVKWISFHSGYDFGYLLKLLTCTSMPADESEFFEILRIYFPCIYDIKYLMRSCKNLKGGLQDIADDLQVARVGPQHQAGSDSLLTCTTFFKMRQMFFD--DRIDDQKYLGYLYGLRSSPSSMQALVQATS 274          
BLAST of NO12G03930 vs. NCBI_GenBank
Match: XP_004337732.1 (ccr4associated factor, putative [Acanthamoeba castellanii str. Neff] >ELR15719.1 ccr4associated factor, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 361.7 bits (927), Expect = 3.600e-96
Identity = 167/261 (63.98%), Postives = 203/261 (77.78%), Query Frame = 0
Query:  143 DGKRMEIREVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDV-TAADYQYKTLKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGLGH 403
            +G   EIREVW ENL+ EM  IR++VE YPY+AMDTEFPG+VARP+G+  + ++Y Y+TL+CNVDLLKIIQLGL+F D EG  PP   TWQ NFKFSL +DMYA+DSI+LL +SGI+F +HE HG+DV  FGELL +SG+VL D ++WISFHSGYDFGYLLK+LTC  LPA E  FF+LL  YFPC YDIKYLM +C  L GGL ++A +L V RIGP HQAGSDSLLT+ TFF++  + F    NL D KF G L+GLGH
Sbjct:    6 NGLEPEIREVWAENLEEEMAHIRDIVEDYPYIAMDTEFPGIVARPIGNFKSPSEYHYQTLRCNVDLLKIIQLGLTFTDGEGRLPPGVATWQFNFKFSLTEDMYAQDSIDLLTRSGINFKRHEEHGVDVSHFGELLTSSGIVLDDRIKWISFHSGYDFGYLLKILTCKPLPAQEEEFFELLLAYFPCIYDIKYLMKSCKSLKGGLNELANDLEVERIGPQHQAGSDSLLTSATFFKMKRMFFE--NNLDDSKFLGVLYGLGH 264          
BLAST of NO12G03930 vs. NCBI_GenBank
Match: GAN07390.1 (CCR4 associated factor [Mucor ambiguus])

HSP 1 Score: 361.3 bits (926), Expect = 4.700e-96
Identity = 172/258 (66.67%), Postives = 207/258 (80.23%), Query Frame = 0
Query:  149 IREVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDV-TAADYQYKTLKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLN-----DDMYAEDSIELLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGL 401
            I+EVW ENL+ EM  +R++VE YPY+AMDTEFPGVVARP+G   T++DY Y+TL+CNVDLLKIIQLG++FAD  GN P +  TWQ NFKF+L+     DDMYA+DSIELL +SGIDF KHE +GIDV  FGELL++SG VL+DDV+WISFHSGYDFGYLLKVLTCS +PADE  FF+LLRTYFPC YDIKYLM +C  L GGLQ IA++L VARIGP HQAGSDSLLT  TFF++  + F     + D+K+ G L+GL
Sbjct:    9 IKEVWAENLEEEMAHLRDLVEEYPYLAMDTEFPGVVARPIGTFKTSSDYHYQTLRCNVDLLKIIQLGVTFADQYGNLPGNICTWQFNFKFNLSPNTCRDDMYAQDSIELLTKSGIDFKKHEEYGIDVEHFGELLISSGFVLLDDVKWISFHSGYDFGYLLKVLTCSIMPADETEFFELLRTYFPCIYDIKYLMKSCKNLKGGLQDIADDLQVARIGPQHQAGSDSLLTCTTFFKMRQMFFE--DRIDDQKYLGYLYGL 264          
The following BLAST results are available for this feature:
BLAST of NO12G03930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_016613085.15.100e-9866.01hypothetical protein SPPG_00723 [Spizellomyces pun... [more]
CDH54244.11.900e-9763.43ccr4-not transcription complex subunit 7 [Lichthei... [more]
ORY99279.11.900e-9764.31ribonuclease H-like domain-containing protein [Syn... [more]
EXX67656.12.500e-9767.72Pop2p [Rhizophagus irregularis DAOM 197198w] >GBC2... [more]
ORY52966.13.300e-9764.82ribonuclease CAF1 [Rhizoclosmatium globosum][more]
XP_006680570.11.200e-9665.22hypothetical protein BATDEDRAFT_90073 [Batrachochy... [more]
XP_023471704.11.600e-9668.70ribonuclease CAF1 [Rhizopus microsporus ATCC 52813... [more]
CDH53595.12.100e-9662.69caf1 family protein [Lichtheimia corymbifera JMRC:... [more]
XP_004337732.13.600e-9663.98ccr4associated factor, putative [Acanthamoeba cast... [more]
GAN07390.14.700e-9666.67CCR4 associated factor [Mucor ambiguus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010384NSK010384Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593024gene_5572Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100037g9gene4868Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03930.4NO12G03930.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G03930.3NO12G03930.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G03930.2NO12G03930.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G03930.1NO12G03930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03930.4NO12G03930.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G03930.3NO12G03930.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G03930.2NO12G03930.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G03930.1NO12G03930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03930 ID=NO12G03930|Name=NO12G03930|organism=Nannochloropsis oceanica|type=gene|length=3326bp
ATGGCATCTAATTACAGGCAAACCCACCAACAACAGTACCGTTgtaaggt
gtgtcttctcgacgtgtggcgggcagcttctttgcctcactcgcccttta
cacatgtcccctccattctcactcctcctttatgaggagtacctttctgc
atggaatgatgatactgcccgtatttgtccctcccgcaaagcacttccac
caacccatgcatctctacaatcacagACTCATCCGCGGCGTCGCCTAAAT
CATCAGGCAGCAGCAGCAGTAAGGACCTCAAGAAAGGATCAAACGCAAGA
GAGCAAGAGGCCAGCCTGGGGTCTCTTCTCTTCCCCGgtcagtcattcag
cacatagcctctttcctcggccggcggcaaccaaccagcgccaccttttc
taccgcagAGGGGCAGCAGACAGCAGATTCACCACCAGCACCGCCAGGAC
CGGCGACCGGGGATCAGCAAGGAGGAGGAGGAGGAGGAGGAGGAGgtgga
ggaggaggaggtggaggaggaggaggaggaggagGTGGAGGAGGTGGAGG
GCAGCAGCAGCAACCACACCAGCAAATGGGCATGAATGGCGGCGACATCG
GGGGAAGCCAGGAAAGCAGTGCGGGAGAAGGAGgtgagtgtgatctatga
gtgacatgcttggttgcgtttttttcccctgttcaacggcaagtggcact
catttcaccctttccttccccccctctctctccccaatctagGCGAGATT
CCCGGCATAGGACCGACGCGGCACATCTACACGTCGCCCGATGGGAAGCG
GATGGAAATCAGGGAGGTCTGGGTCGAAAATTTGGACCTAGAGATGACCG
CTATCCGGGAGgttggtggagagggagggagggagggagggcaggataag
acacggagagcgaggtgaaggacaataaattgtcgtgccaacttcttaca
gtatcgaaggtacccacatttttatttttcacgcatcctcctctttctct
ccatccctcgctaagGTGGTGGAGAGGTATCCATACGTGGCAATGGACAC
GGAGTTTCCCGGCGTCGTTGCCCGGCCAGTCGGAGACGTGACGGCCGCAG
ATTATCAATACAAGACCTTGAAGTGCAATGTGGATTTGCTGAAGgtaaaa
gaaggagggagaacaggagagtagcagggaagggttgtgcgtgttcgact
tctaccagacgaccgacatgcgggccccgccctccgtcccccactgcttc
cgtccctttcatctctcttagATCATCCAGCTAGGCCTCTCCTTTGCCGA
TGCCGAGGGCAACAGCCCCCCAGACTGTCCCACCTGGCAGCTCAACTTCA
AATTTTCTCTAAACGACGACATGTACGCCGAGGACTCGATCGAGCTGTTG
AAGCAGAGCGGGATTGATTTCTCGAAGCATGAGgtgagaagggtgggagg
gggagggggaagtagggagggataaccctgattgtgctgtcaacaaactg
tgcgatattgacgacctctgtcttcagcctccatttattctccccctctc
ccaccctcattcatttccccccgcagCATCATGGCATCGACGTGCCCCGG
TTCGGGGAGCTGCTCATGACTAGCGGCCTGGTGCTGATGGACGATGTGCG
TTGGATCTCTTTTCACTCGGGCTATGACTTCGGATATCTGCTTAAGGTGC
TCACCTGCTCCGCCTTGCCCGCCGATGAGAATGGgtgcgtcgtctctccc
ttcctccctccctccctccctccctccctccctccctccctccctccctc
cattgtgtatgcgcgtgcgaacaaatcagcggactagtaggtgtcacatc
agcggcctagtaggtgtcacgtcagtaatttgtcttacaccattcaccgt
tgcctcccgtccctccctccctccctcccttgtcgtcagATTCTTCGACC
TTCTTCGCACTTATTTCCCCTGCTTCTACGACATCAAGTATCTCATGACG
GCCTGTAATGGCCTACACGGAGGCCTCCAGAAAATCGgtacgtcctccct
tcaccccccccccccctccttcccatatcccctgaaacagtcacctcgta
ttgcatcttcgactccctcttcccctccattgctctctccctctggtgtg
gcctgtgctacctccgtacaagctggcagcaaaaccctctgtctcacata
cgcatcgccctccccccttccctccccctctttctctctgcagCCGAAGA
GCTGTCCGTGGCACGCATAGGCCCTATGCACCAAGCCGGCAGCGACTCCC
TCCTGACCGCACAGACCTTCTTCCGCCTTTGCACGGTCTCCTTCAACGGC
CTCGGCAATCTGAGCGACGAGAAGTTCAAGGGCGAGCTCTTCGGgtgcgt
ctcggtttcttccttccccgtcttatcctctttcttctcgttgagtgctc
tctcttccccctatttacccactcctttttttgggccctataccctcctc
tctcttccttcctccctccttagACTGGGGCATAACCATACGGTGTACCG
GAACAAGATGCAGGCCACCAACCGACAGCAACAAGGCCATGGCCACGGAG
gtaaggaagctcacagacatgtacactcacccgacctgctctctgtcccc
ccttttctccgtcctctgtctttcttggtgtgtaaacctcatttctaaca
acgtttctctcttcactagcgcaaatgatccacctgcctctccctttcct
ccctccctccatacttccctccttcccttccctccctcttcctctctcca
gGGCACGGCGGGCATGGACAAGCCCCCCCTGCACTCGAGCGGAATGACTC
GACCAGCAGTTCTCAGTCTGTCGCAGTGTCAACTTCGGCAGCGGGAAAGA
CAGgtaggtcagatagaggacattcgggagggagggaagagaaagggtgg
gagcggatgcagggctggtgcatttgctctgatatctgttttgctgaaca
tcttcctcctcaagttccccacccattccgagtactttactggatgcctt
ctcttatctttaaaataccacaacaccagcagCAGACAGCGCCGCCTCGC
CCACGACAACAGGCGCCTCTGGAGGGATTGATGGGGACGAAAAGCTCGTG
CCAGAGGAATACACGGCCACTGGAGGGTCTTGAGGAAGAAGCGTTAGAGC
GATGACGACGTGTATGTAAAGGAGGTTTGAGGGACCGAGAGGAGGGAAGC
AAAAGGAGAAAAGAGAGTTAGTGGGTGTGAATTGGTTAGGCACTTTATTC
CCTAAAAAAGGAAACAGCTCAAGCCG
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protein sequence of NO12G03930.4

>NO12G03930.4-protein ID=NO12G03930.4-protein|Name=NO12G03930.4|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MASNYRQTHQQQYRYSSAASPKSSGSSSSKDLKKGSNAREQEASLGSLLF
PEGQQTADSPPAPPGPATGDQQGGGGGGGGGGGGGGGGGGGGGGGGGGGQ
QQQPHQQMGMNGGDIGGSQESSAGEGGEIPGIGPTRHIYTSPDGKRMEIR
EVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDVTAADYQYKT
LKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIE
LLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGY
LLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAE
ELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGL
GHNHTVYRNKMQATNRQQQGHGHGGKEAHRHVHSPDLLSVPPFLRPLSFL
VCKPHF*
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protein sequence of NO12G03930.3

>NO12G03930.3-protein ID=NO12G03930.3-protein|Name=NO12G03930.3|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MASNYRQTHQQQYRYSSAASPKSSGSSSSKDLKKGSNAREQEASLGSLLF
PEGQQTADSPPAPPGPATGDQQGGGGGGGGGGGGGGQQQQPHQQMGMNGG
DIGGSQESSAGEGGEIPGIGPTRHIYTSPDGKRMEIREVWVENLDLEMTA
IREVVERYPYVAMDTEFPGVVARPVGDVTAADYQYKTLKCNVDLLKIIQL
GLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHE
HHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPAD
ENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQA
GSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGLGHNHTVYRNKMQA
TNRQQQGHGHGGKEAHRHVHSPDLLSVPPFLRPLSFLVCKPHF*
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protein sequence of NO12G03930.2

>NO12G03930.2-protein ID=NO12G03930.2-protein|Name=NO12G03930.2|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MASNYRQTHQQQYRYSSAASPKSSGSSSSKDLKKGSNAREQEASLGSLLF
PEGQQTADSPPAPPGPATGDQQGGGGGGGGGGGGGGGGGGGGGGGGGGGQ
QQQPHQQMGMNGGDIGGSQESSAGEGGEIPGIGPTRHIYTSPDGKRMEIR
EVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDVTAADYQYKT
LKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIE
LLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGY
LLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAE
ELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGL
GHNHTVYRNKMQATNRQQQGHGHGGHGGHGQAPPALERNDSTSSSQSVAV
STSAAGKTADSAASPTTTGASGGIDGDEKLVPEEYTATGGS*
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protein sequence of NO12G03930.1

>NO12G03930.1-protein ID=NO12G03930.1-protein|Name=NO12G03930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MASNYRQTHQQQYRYSSAASPKSSGSSSSKDLKKGSNAREQEASLGSLLF
PEGQQTADSPPAPPGPATGDQQGGGGGGGGGGGGGGQQQQPHQQMGMNGG
DIGGSQESSAGEGGEIPGIGPTRHIYTSPDGKRMEIREVWVENLDLEMTA
IREVVERYPYVAMDTEFPGVVARPVGDVTAADYQYKTLKCNVDLLKIIQL
GLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHE
HHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPAD
ENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQA
GSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGLGHNHTVYRNKMQA
TNRQQQGHGHGGHGGHGQAPPALERNDSTSSSQSVAVSTSAAGKTADSAA
SPTTTGASGGIDGDEKLVPEEYTATGGS*
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