NO12G03930.4, NO12G03930.4 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G03930.4
Unique Name	NO12G03930.4
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1999
Alignment location	chr12:1127976..1131301 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:1127976..1131301 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO12G03930.4 vs.
Match: EWM25650.1 (ccr4-associated factor [Nannochloropsis gaditana])

HSP 1 Score: 572.4 bits (1474), Expect = 1.300e-159
Identity = 273/318 (85.85%), Postives = 294/318 (92.45%), Query Frame = 0

Query:  115 IGGSQESSAGEGGEIPGIGPTRHIYTSPDGKRMEIREVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDVTAADYQYKTLKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGLGHNHTVYRNKMQATNRQQQGHGHGGKEAHRHV 433
            + G  +SSA E GEIPG+GPTRHIYT  DGKRMEIREVW+ENLD EM A+REVVE+YPYVAMDTEFPGVVARPVGDV+A+DYQYKTLKCNVDLLKIIQLGLSFAD++GNSPP+CPTWQ NF+FSL+DD+YAEDSIELLKQSGIDFSKHE HGIDV RFGELLMTSGLVLMD+VRWISFHSGYDFGYLLKVLTC+ALP+DENGFFDLLRTYFPCFYDIKYLMTAC GLHGGLQ+IAEELSVAR+GPMHQAGSDSLLTAQTFFRLC VSF+GL NLSDEKFKGELFGLGHNHTVYR+KMQ TNR    HGHGG E  R V
Sbjct:    1 MNGGPQSSAEEKGEIPGVGPTRHIYTGQDGKRMEIREVWLENLDKEMVAVREVVEQYPYVAMDTEFPGVVARPVGDVSASDYQYKTLKCNVDLLKIIQLGLSFADSDGNSPPECPTWQFNFRFSLSDDIYAEDSIELLKQSGIDFSKHESHGIDVFRFGELLMTSGLVLMDEVRWISFHSGYDFGYLLKVLTCAALPSDENGFFDLLRTYFPCFYDIKYLMTACQGLHGGLQRIAEELSVARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEKFKGELFGLGHNHTVYRSKMQNTNR----HGHGGLERQREV 314

The following BLAST results are available for this feature:

BLAST of NO12G03930.4 vs.

BLAST of NO12G03930.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25650.1	1.300e-159	85.85	ccr4-associated factor [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G03930	NO12G03930	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G03930.4	NO12G03930.4-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G03930.4.cds1	NO12G03930.4.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G03930.4.cds2	NO12G03930.4.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G03930.4.cds3	NO12G03930.4.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G03930.4.cds4	NO12G03930.4.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G03930.4.cds5	NO12G03930.4.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G03930.4.cds6	NO12G03930.4.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G03930.4.cds7	NO12G03930.4.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G03930.4.cds8	NO12G03930.4.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G03930.4.cds9	NO12G03930.4.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G03930.4.cds10	NO12G03930.4.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:1127976..1131301-
coding sequence from alignment at chr12:1127976..1131301-

mRNA sequence

>NO12G03930.4 ID=NO12G03930.4|Name=NO12G03930.4|organism=Nannochloropsis oceanica|type=mRNA|length=1999bp
ATGGCATCTAATTACAGGCAAACCCACCAACAACAGTACCGTTACTCATC
CGCGGCGTCGCCTAAATCATCAGGCAGCAGCAGCAGTAAGGACCTCAAGA
AAGGATCAAACGCAAGAGAGCAAGAGGCCAGCCTGGGGTCTCTTCTCTTC
CCCGAGGGGCAGCAGACAGCAGATTCACCACCAGCACCGCCAGGACCGGC
GACCGGGGATCAGCAAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAG
GAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGTGGAGGGCAG
CAGCAGCAACCACACCAGCAAATGGGCATGAATGGCGGCGACATCGGGGG
AAGCCAGGAAAGCAGTGCGGGAGAAGGAGGCGAGATTCCCGGCATAGGAC
CGACGCGGCACATCTACACGTCGCCCGATGGGAAGCGGATGGAAATCAGG
GAGGTCTGGGTCGAAAATTTGGACCTAGAGATGACCGCTATCCGGGAGGT
GGTGGAGAGGTATCCATACGTGGCAATGGACACGGAGTTTCCCGGCGTCG
TTGCCCGGCCAGTCGGAGACGTGACGGCCGCAGATTATCAATACAAGACC
TTGAAGTGCAATGTGGATTTGCTGAAGATCATCCAGCTAGGCCTCTCCTT
TGCCGATGCCGAGGGCAACAGCCCCCCAGACTGTCCCACCTGGCAGCTCA
ACTTCAAATTTTCTCTAAACGACGACATGTACGCCGAGGACTCGATCGAG
CTGTTGAAGCAGAGCGGGATTGATTTCTCGAAGCATGAGCATCATGGCAT
CGACGTGCCCCGGTTCGGGGAGCTGCTCATGACTAGCGGCCTGGTGCTGA
TGGACGATGTGCGTTGGATCTCTTTTCACTCGGGCTATGACTTCGGATAT
CTGCTTAAGGTGCTCACCTGCTCCGCCTTGCCCGCCGATGAGAATGGATT
CTTCGACCTTCTTCGCACTTATTTCCCCTGCTTCTACGACATCAAGTATC
TCATGACGGCCTGTAATGGCCTACACGGAGGCCTCCAGAAAATCGCCGAA
GAGCTGTCCGTGGCACGCATAGGCCCTATGCACCAAGCCGGCAGCGACTC
CCTCCTGACCGCACAGACCTTCTTCCGCCTTTGCACGGTCTCCTTCAACG
GCCTCGGCAATCTGAGCGACGAGAAGTTCAAGGGCGAGCTCTTCGGACTG
GGGCATAACCATACGGTGTACCGGAACAAGATGCAGGCCACCAACCGACA
GCAACAAGGCCATGGCCACGGAGGTAAGGAAGCTCACAGACATGTACACT
CACCCGACCTGCTCTCTGTCCCCCCTTTTCTCCGTCCTCTGTCTTTCTTG
GTGTGTAAACCTCATTTCTAACAACGTTTCTCTCTTCACTAGCGCAAATG
ATCCACCTGCCTCTCCCTTTCCTCCCTCCCTCCATACTTCCCTCCTTCCC
TTCCCTCCCTCTTCCTCTCTCCAGGGCACGGCGGGCATGGACAAGCCCCC
CCTGCACTCGAGCGGAATGACTCGACCAGCAGTTCTCAGTCTGTCGCAGT
GTCAACTTCGGCAGCGGGAAAGACAGGTAGGTCAGATAGAGGACATTCGG
GAGGGAGGGAAGAGAAAGGGTGGGAGCGGATGCAGGGCTGGTGCATTTGC
TCTGATATCTGTTTTGCTGAACATCTTCCTCCTCAAGTTCCCCACCCATT
CCGAGTACTTTACTGGATGCCTTCTCTTATCTTTAAAATACCACAACACC
AGCAGCAGACAGCGCCGCCTCGCCCACGACAACAGGCGCCTCTGGAGGGA
TTGATGGGGACGAAAAGCTCGTGCCAGAGGAATACACGGCCACTGGAGGG
TCTTGAGGAAGAAGCGTTAGAGCGATGACGACGTGTATGTAAAGGAGGTT
TGAGGGACCGAGAGGAGGGAAGCAAAAGGAGAAAAGAGAGTTAGTGGGTG
TGAATTGGTTAGGCACTTTATTCCCTAAAAAAGGAAACAGCTCAAGCCG

protein sequence of NO12G03930.4

>NO12G03930.4-protein ID=NO12G03930.4-protein|Name=NO12G03930.4|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MASNYRQTHQQQYRYSSAASPKSSGSSSSKDLKKGSNAREQEASLGSLLF
PEGQQTADSPPAPPGPATGDQQGGGGGGGGGGGGGGGGGGGGGGGGGGGQ
QQQPHQQMGMNGGDIGGSQESSAGEGGEIPGIGPTRHIYTSPDGKRMEIR
EVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDVTAADYQYKT
LKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIE
LLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGY
LLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAE
ELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGL
GHNHTVYRNKMQATNRQQQGHGHGGKEAHRHVHSPDLLSVPPFLRPLSFL
VCKPHF*

mRNA from alignment at chr12:1127976..1131301-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G03930.4 ID=NO12G03930.4|Name=NO12G03930.4|organism=Nannochloropsis oceanica|type=mRNA|length=3326bp|location=Sequence derived from alignment at chr12:1127976..1131301- (Nannochloropsis oceanica)
ATGGCATCTAATTACAGGCAAACCCACCAACAACAGTACCGTTGTAAGGT
GTGTCTTCTCGACGTGTGGCGGGCAGCTTCTTTGCCTCACTCGCCCTTTA
CACATGTCCCCTCCATTCTCACTCCTCCTTTATGAGGAGTACCTTTCTGC
ATGGAATGATGATACTGCCCGTATTTGTCCCTCCCGCAAAGCACTTCCAC
CAACCCATGCATCTCTACAATCACAGACTCATCCGCGGCGTCGCCTAAAT
CATCAGGCAGCAGCAGCAGTAAGGACCTCAAGAAAGGATCAAACGCAAGA
GAGCAAGAGGCCAGCCTGGGGTCTCTTCTCTTCCCCGGTCAGTCATTCAG
CACATAGCCTCTTTCCTCGGCCGGCGGCAACCAACCAGCGCCACCTTTTC
TACCGCAGAGGGGCAGCAGACAGCAGATTCACCACCAGCACCGCCAGGAC
CGGCGACCGGGGATCAGCAAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGA
GGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGTGGAGG
GCAGCAGCAGCAACCACACCAGCAAATGGGCATGAATGGCGGCGACATCG
GGGGAAGCCAGGAAAGCAGTGCGGGAGAAGGAGGTGAGTGTGATCTATGA
GTGACATGCTTGGTTGCGTTTTTTTCCCCTGTTCAACGGCAAGTGGCACT
CATTTCACCCTTTCCTTCCCCCCCTCTCTCTCCCCAATCTAGGCGAGATT
CCCGGCATAGGACCGACGCGGCACATCTACACGTCGCCCGATGGGAAGCG
GATGGAAATCAGGGAGGTCTGGGTCGAAAATTTGGACCTAGAGATGACCG
CTATCCGGGAGGTTGGTGGAGAGGGAGGGAGGGAGGGAGGGCAGGATAAG
ACACGGAGAGCGAGGTGAAGGACAATAAATTGTCGTGCCAACTTCTTACA
GTATCGAAGGTACCCACATTTTTATTTTTCACGCATCCTCCTCTTTCTCT
CCATCCCTCGCTAAGGTGGTGGAGAGGTATCCATACGTGGCAATGGACAC
GGAGTTTCCCGGCGTCGTTGCCCGGCCAGTCGGAGACGTGACGGCCGCAG
ATTATCAATACAAGACCTTGAAGTGCAATGTGGATTTGCTGAAGGTAAAA
GAAGGAGGGAGAACAGGAGAGTAGCAGGGAAGGGTTGTGCGTGTTCGACT
TCTACCAGACGACCGACATGCGGGCCCCGCCCTCCGTCCCCCACTGCTTC
CGTCCCTTTCATCTCTCTTAGATCATCCAGCTAGGCCTCTCCTTTGCCGA
TGCCGAGGGCAACAGCCCCCCAGACTGTCCCACCTGGCAGCTCAACTTCA
AATTTTCTCTAAACGACGACATGTACGCCGAGGACTCGATCGAGCTGTTG
AAGCAGAGCGGGATTGATTTCTCGAAGCATGAGGTGAGAAGGGTGGGAGG
GGGAGGGGGAAGTAGGGAGGGATAACCCTGATTGTGCTGTCAACAAACTG
TGCGATATTGACGACCTCTGTCTTCAGCCTCCATTTATTCTCCCCCTCTC
CCACCCTCATTCATTTCCCCCCGCAGCATCATGGCATCGACGTGCCCCGG
TTCGGGGAGCTGCTCATGACTAGCGGCCTGGTGCTGATGGACGATGTGCG
TTGGATCTCTTTTCACTCGGGCTATGACTTCGGATATCTGCTTAAGGTGC
TCACCTGCTCCGCCTTGCCCGCCGATGAGAATGGGTGCGTCGTCTCTCCC
TTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CATTGTGTATGCGCGTGCGAACAAATCAGCGGACTAGTAGGTGTCACATC
AGCGGCCTAGTAGGTGTCACGTCAGTAATTTGTCTTACACCATTCACCGT
TGCCTCCCGTCCCTCCCTCCCTCCCTCCCTTGTCGTCAGATTCTTCGACC
TTCTTCGCACTTATTTCCCCTGCTTCTACGACATCAAGTATCTCATGACG
GCCTGTAATGGCCTACACGGAGGCCTCCAGAAAATCGGTACGTCCTCCCT
TCACCCCCCCCCCCCCTCCTTCCCATATCCCCTGAAACAGTCACCTCGTA
TTGCATCTTCGACTCCCTCTTCCCCTCCATTGCTCTCTCCCTCTGGTGTG
GCCTGTGCTACCTCCGTACAAGCTGGCAGCAAAACCCTCTGTCTCACATA
CGCATCGCCCTCCCCCCTTCCCTCCCCCTCTTTCTCTCTGCAGCCGAAGA
GCTGTCCGTGGCACGCATAGGCCCTATGCACCAAGCCGGCAGCGACTCCC
TCCTGACCGCACAGACCTTCTTCCGCCTTTGCACGGTCTCCTTCAACGGC
CTCGGCAATCTGAGCGACGAGAAGTTCAAGGGCGAGCTCTTCGGGTGCGT
CTCGGTTTCTTCCTTCCCCGTCTTATCCTCTTTCTTCTCGTTGAGTGCTC
TCTCTTCCCCCTATTTACCCACTCCTTTTTTTGGGCCCTATACCCTCCTC
TCTCTTCCTTCCTCCCTCCTTAGACTGGGGCATAACCATACGGTGTACCG
GAACAAGATGCAGGCCACCAACCGACAGCAACAAGGCCATGGCCACGGAG
GTAAGGAAGCTCACAGACATGTACACTCACCCGACCTGCTCTCTGTCCCC
CCTTTTCTCCGTCCTCTGTCTTTCTTGGTGTGTAAACCTCATTTCTAACA
ACGTTTCTCTCTTCACTAGCGCAAATGATCCACCTGCCTCTCCCTTTCCT
CCCTCCCTCCATACTTCCCTCCTTCCCTTCCCTCCCTCTTCCTCTCTCCA
GGGCACGGCGGGCATGGACAAGCCCCCCCTGCACTCGAGCGGAATGACTC
GACCAGCAGTTCTCAGTCTGTCGCAGTGTCAACTTCGGCAGCGGGAAAGA
CAGGTAGGTCAGATAGAGGACATTCGGGAGGGAGGGAAGAGAAAGGGTGG
GAGCGGATGCAGGGCTGGTGCATTTGCTCTGATATCTGTTTTGCTGAACA
TCTTCCTCCTCAAGTTCCCCACCCATTCCGAGTACTTTACTGGATGCCTT
CTCTTATCTTTAAAATACCACAACACCAGCAGCAGACAGCGCCGCCTCGC
CCACGACAACAGGCGCCTCTGGAGGGATTGATGGGGACGAAAAGCTCGTG
CCAGAGGAATACACGGCCACTGGAGGGTCTTGAGGAAGAAGCGTTAGAGC
GATGACGACGTGTATGTAAAGGAGGTTTGAGGGACCGAGAGGAGGGAAGC
AAAAGGAGAAAAGAGAGTTAGTGGGTGTGAATTGGTTAGGCACTTTATTC
CCTAAAAAAGGAAACAGCTCAAGCCG

Coding sequence (CDS) from alignment at chr12:1127976..1131301-

>NO12G03930.4 ID=NO12G03930.4|Name=NO12G03930.4|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at chr12:1127976..1131301- (Nannochloropsis oceanica)
ATGGCATCTAATTACAGGCAAACCCACCAACAACAGTACCGTTACTCATC
CGCGGCGTCGCCTAAATCATCAGGCAGCAGCAGCAGTAAGGACCTCAAGA
AAGGATCAAACGCAAGAGAGCAAGAGGCCAGCCTGGGGTCTCTTCTCTTC
CCCGAGGGGCAGCAGACAGCAGATTCACCACCAGCACCGCCAGGACCGGC
GACCGGGGATCAGCAAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAG
GAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGTGGAGGGCAG
CAGCAGCAACCACACCAGCAAATGGGCATGAATGGCGGCGACATCGGGGG
AAGCCAGGAAAGCAGTGCGGGAGAAGGAGGCGAGATTCCCGGCATAGGAC
CGACGCGGCACATCTACACGTCGCCCGATGGGAAGCGGATGGAAATCAGG
GAGGTCTGGGTCGAAAATTTGGACCTAGAGATGACCGCTATCCGGGAGGT
GGTGGAGAGGTATCCATACGTGGCAATGGACACGGAGTTTCCCGGCGTCG
TTGCCCGGCCAGTCGGAGACGTGACGGCCGCAGATTATCAATACAAGACC
TTGAAGTGCAATGTGGATTTGCTGAAGATCATCCAGCTAGGCCTCTCCTT
TGCCGATGCCGAGGGCAACAGCCCCCCAGACTGTCCCACCTGGCAGCTCA
ACTTCAAATTTTCTCTAAACGACGACATGTACGCCGAGGACTCGATCGAG
CTGTTGAAGCAGAGCGGGATTGATTTCTCGAAGCATGAGCATCATGGCAT
CGACGTGCCCCGGTTCGGGGAGCTGCTCATGACTAGCGGCCTGGTGCTGA
TGGACGATGTGCGTTGGATCTCTTTTCACTCGGGCTATGACTTCGGATAT
CTGCTTAAGGTGCTCACCTGCTCCGCCTTGCCCGCCGATGAGAATGGATT
CTTCGACCTTCTTCGCACTTATTTCCCCTGCTTCTACGACATCAAGTATC
TCATGACGGCCTGTAATGGCCTACACGGAGGCCTCCAGAAAATCGCCGAA
GAGCTGTCCGTGGCACGCATAGGCCCTATGCACCAAGCCGGCAGCGACTC
CCTCCTGACCGCACAGACCTTCTTCCGCCTTTGCACGGTCTCCTTCAACG
GCCTCGGCAATCTGAGCGACGAGAAGTTCAAGGGCGAGCTCTTCGGACTG
GGGCATAACCATACGGTGTACCGGAACAAGATGCAGGCCACCAACCGACA
GCAACAAGGCCATGGCCACGGAGGTAAGGAAGCTCACAGACATGTACACT
CACCCGACCTGCTCTCTGTCCCCCCTTTTCTCCGTCCTCTGTCTTTCTTG
GTGTGTAAACCTCATTTCTAA

Synonyms

Publications