NO12G03740, NO12G03740 (gene) Nannochloropsis oceanica

Overview
NameNO12G03740
Unique NameNO12G03740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2304
Alignment locationchr12:1036639..1038942 -

Link to JBrowse

Properties
Property NameValue
DescriptionEr lumen protein retaining receptor
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1036639..1038942 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046923ER retention sequence binding
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
GO:0005783endoplasmic reticulum
Vocabulary: Biological Process
TermDefinition
GO:0006621protein retention in ER lumen
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR000133ER_ret_rcpt
Homology
BLAST of NO12G03740 vs. NCBI_GenBank
Match: OQR86389.1 (hypothetical protein ACHHYP_10601 [Achlya hypogyna])

HSP 1 Score: 285.8 bits (730), Expect = 1.500e-73
Identity = 139/292 (47.60%), Postives = 189/292 (64.73%), Query Frame = 0
Query:    2 GQSKGGNVNMQLDRYLRFMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGG 294
            G+S G  +         FM KH+ +  A W GF +  +  + L SDGDFSF+MT+GAF R+FGFG+L  K  T RS +G+SLKTLQLY  VFFFRL SI+ + GYLPYD+SGDW Y F+E V L L +  ++LV ++F  SY+ R D+FG +HVP + G + Y+ +PC  L ++ HP LN ++ AD +W  ++Y+E+VA+LPQL+MFQK+    VE  I HWV+A  F   L + FWM SYHEL +      VG  V+  Q  H+I+M DF YYY  S++ G P+ LP  GG
Sbjct:   15 GKSLGRKMLKDKPAVSHFMTKHKGN-IALWTGFFVFVIFAYHLFSDGDFSFLMTFGAFVRAFGFGILIFKSLTQRSVSGLSLKTLQLYAFVFFFRLCSILRYQGYLPYDRSGDWLYTFIEFVGLALTIGVIFLVTVQFRGSYEFRYDTFGFLHVPSEYG-IAYILVPCIFLGMIIHPNLNMNWFADVSWTIALYIEAVAILPQLFMFQKRGGGTVESCISHWVYALAFGSFLHLWFWMFSYHELGEKEAGHHVGYTVIFVQIGHMIMMGDFLYYYFKSLKDGGPMMLPTHGG 304          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: XP_008605157.1 (hypothetical protein SDRG_01411 [Saprolegnia diclina VS20] >XP_012194489.1 hypothetical protein SPRG_00886 [Saprolegnia parasitica CBS 223.65] >EQC41443.1 hypothetical protein SDRG_01411 [Saprolegnia diclina VS20] >KDO34825.1 hypothetical protein SPRG_00886 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 281.6 bits (719), Expect = 2.900e-72
Identity = 136/275 (49.45%), Postives = 183/275 (66.55%), Query Frame = 0
Query:   19 FMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGG 294
            F+ KH+ +  A W GF +  +  + L SDGDFSF+MT+GAF R+FGFG+L  K  T RS +G+SLKTLQLY  VFFFRL SI+ + GYLPYD+SGDW Y F+E V L L L  ++LV ++F  SY+ R D+FG +H+P + G + Y+  PC  L +L HP LN ++ AD +W  ++Y+E+VA+LPQL+MFQK+    VE  I HWV+A  F   L + FWM SYHEL +      VG  V+  Q  H+I+M DF YYY  S++ G P+ LP  GG
Sbjct:   11 FVTKHKGN-IALWTGFFVFVIFAYHLFSDGDFSFLMTFGAFVRAFGFGILIFKSLTQRSVSGLSLKTLQLYAFVFFFRLCSILRYQGYLPYDRSGDWLYTFIEFVGLALTLGVIFLVTVQFRGSYEFRYDTFGFLHIPSEYG-IAYILGPCIFLGMLIHPNLNMNWFADVSWTIALYIEAVAILPQLFMFQKRGGGTVESCISHWVYALAFGSFLHLWFWMFSYHELGEKEAGHHVGYTVIFVQIGHMIMMGDFLYYYFKSLKDGGPMMLPTHGG 283          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: XP_008867577.1 (hypothetical protein H310_04839 [Aphanomyces invadans] >ETW03348.1 hypothetical protein H310_04839 [Aphanomyces invadans])

HSP 1 Score: 277.7 bits (709), Expect = 4.200e-71
Identity = 131/273 (47.99%), Postives = 184/273 (67.40%), Query Frame = 0
Query:   20 MGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAG 293
            + +H+ +  AAW G     L  +  +SDGDFSF+MT+G+F R+FGFG+L  K  T +S +G+SLKTLQLYG VFFFRL SI  + GYLPYD+SGDW Y F+E V L L L  ++LV ++F  SYD + D+FG++HVP + G +VY+ +P  LL +L HP LN ++ AD +W  ++Y+E++A+LPQL+MFQK+    VE  I HWV+A  F   L + FW+ SYHEL + +    VG  V+  Q  H+++M DF YYY  S++ G P+ LP  G
Sbjct:   14 LARHKGN-IAAWTGLFAFVLFSYHFLSDGDFSFLMTFGSFVRAFGFGILIFKSLTQKSVSGLSLKTLQLYGFVFFFRLCSITRYQGYLPYDRSGDWLYTFIEFVGLGLTLAVIFLVTVQFRGSYDFKFDTFGHLHVPSEYG-IVYILVPSILLGMLIHPNLNMNWFADVSWTIALYIEAIAILPQLFMFQKRGGGAVETCISHWVYALAFGSFLHLWFWLFSYHELGEKNAGHHVGYTVIFVQIGHMLMMGDFLYYYFKSMKDGGPMMLPTHG 284          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: XP_009825349.1 (hypothetical protein H257_03098 [Aphanomyces astaci] >ETV85331.1 hypothetical protein H257_03098 [Aphanomyces astaci])

HSP 1 Score: 276.2 bits (705), Expect = 1.200e-70
Identity = 131/273 (47.99%), Postives = 183/273 (67.03%), Query Frame = 0
Query:   20 MGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAG 293
            + +H+ +  +AW G     L  +   SDGDFSF+MT+GAF R+FGFG+L  K  T +S +G+SLKTLQLYG VF FRL SI  + GYLPYD+SGDW Y F+E V L L L  ++LV ++F  SYD + D+FG++HVP + G +VY+ +P  LL +L HP LN ++LAD +W  ++Y+E++A+LPQL+MFQK+    VE  I HWV+A  F   L + FW+ SYHEL + +    VG  V+  Q  H+++M DF YYY  S++ G P+ LP  G
Sbjct:   14 LARHKGN-ISAWTGLFAFVLFSYHFFSDGDFSFLMTFGAFVRAFGFGILIFKSLTQKSVSGLSLKTLQLYGFVFLFRLCSITRYQGYLPYDRSGDWLYTFIEFVGLGLTLAVIFLVTVQFRGSYDFKFDTFGHLHVPSEFG-IVYILVPSILLGMLIHPNLNMNWLADVSWTIALYIEAIAILPQLFMFQKRGGGAVETCISHWVYALAFGSFLHLWFWLFSYHELGEKNAGHHVGYTVIFVQIGHMLMMGDFLYYYFKSMKDGGPMMLPTHG 284          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: XP_024574198.1 (er lumen protein retaining receptor [Plasmopara halstedii] >CEG37829.1 er lumen protein retaining receptor [Plasmopara halstedii])

HSP 1 Score: 274.6 bits (701), Expect = 3.500e-70
Identity = 133/278 (47.84%), Postives = 187/278 (67.27%), Query Frame = 0
Query:   15 RYLRFMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAG 293
            R   F+ KH+ S  A W GFL++    + L SDGDFSF+MT G+F R+FGF  L  K ++ RS  G+SLKTL+LY  VF FRL+SI+ + GYLPYD+SGDW Y F+E ++L L    +YLV  RF  SY+ R D+FG +HVP ++GAL Y+ +PC L+ +L HP LN ++L+D +W  ++Y+E+ A+LPQL+MFQK+    V+  I H+V+A  F   L ++FW SSYHEL +    + VG  V+L Q  H+++M DF YYY  S++ G P+ LP  G
Sbjct:   11 RSAAFLTKHK-SNIALWSGFLVVVFFCYHLFSDGDFSFLMTMGSFVRAFGFVFLIFKAFSQRSVAGLSLKTLELYAFVFLFRLSSILRYQGYLPYDRSGDWLYSFLEIMALMLCCGVIYLVTTRFNSSYELRYDTFGWLHVPTELGAL-YILLPCILIGMLIHPNLNRNWLSDVSWTIALYIEAFAILPQLFMFQKRGGGAVDSCISHFVYALAFGSFLHLVFWFSSYHELGEKDAGQHVGYTVILVQIGHMLMMADFLYYYFKSMKEGGPMMLPTHG 286          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: XP_008906446.1 (hypothetical protein PPTG_12014 [Phytophthora parasitica INRA-310] >ETI46019.1 hypothetical protein F443_09545 [Phytophthora parasitica P1569] >ETK85985.1 hypothetical protein L915_09339 [Phytophthora parasitica] >ETL39411.1 hypothetical protein L916_09245 [Phytophthora parasitica] >ETL92539.1 hypothetical protein L917_09178 [Phytophthora parasitica] >ETM45831.1 hypothetical protein L914_09204 [Phytophthora parasitica] >ETN08158.1 hypothetical protein PPTG_12014 [Phytophthora parasitica INRA-310] >ETO74710.1 hypothetical protein F444_09610 [Phytophthora parasitica P1976] >ETP15854.1 hypothetical protein F441_09478 [Phytophthora parasitica CJ01A1] >ETP43907.1 hypothetical protein F442_09452 [Phytophthora parasitica P10297] >KUG01890.1 ER lumen protein-retaining receptor [Phytophthora nicotianae])

HSP 1 Score: 273.1 bits (697), Expect = 1.000e-69
Identity = 131/274 (47.81%), Postives = 184/274 (67.15%), Query Frame = 0
Query:   19 FMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAG 293
            F+  H+ S  A W GF+++    + L SDGDFSF+MT GAF R+FGF  L  K ++ RS  G+SLKTL+LY  VFFFRL+SI+ + GYLPYD+SGDW Y F+E V+L L    +YLV +RF  +Y+ R D+FG +HVP ++GAL Y+ +PC    +L HP LN ++ +D +W  ++Y+E+VA+LPQL+MFQK+    VE  I H+V+A  F   L ++FW SSYHEL +    + VG  V+  Q  H+++M DF YYY  S++ G P+ LP  G
Sbjct:   15 FLTTHK-SNIALWSGFVVVVFFCYHLFSDGDFSFLMTMGAFVRAFGFAFLIFKAFSQRSVAGLSLKTLELYAFVFFFRLSSILRYQGYLPYDRSGDWLYSFLEIVALTLCCGVIYLVTMRFNSTYELRYDTFGWLHVPTELGAL-YILLPCMFFGMLIHPNLNRNWFSDVSWTIALYIEAVAILPQLFMFQKRGGGAVESCISHFVYALAFGSFLHLVFWFSSYHELGEKDAGQHVGYAVIFVQIGHMLMMADFLYYYFKSMKEGGPMMLPTHG 286          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: CCI49508.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 273.1 bits (697), Expect = 1.000e-69
Identity = 129/275 (46.91%), Postives = 185/275 (67.27%), Query Frame = 0
Query:   19 FMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGG 294
            F   H+ S  A W GF +L L  + L SDGDFSF+MT+G+F R+FGF +L  K ++ +S +G+SLKT++LY  VFFFRL SI+ F GYLPYD+SGDW Y  +E  +LFL    +YL+ +++  SY+ R D+FG +H+P ++GAL Y+ +PC L  ++ HP LN ++LAD +W  ++Y+E++A+LPQL+MFQK+    VE  I H+V+A  F   L ++FW  SYHEL        VG  V+L Q  H+++M DF YYY  S++ G P+ LP  GG
Sbjct:   11 FFSTHK-SNIAIWSGFFVLVLFCYHLFSDGDFSFLMTFGSFVRAFGFAVLIFKAFSQKSVSGLSLKTVELYACVFFFRLASILRFQGYLPYDRSGDWLYSALEICALFLSCGVIYLIMVQYNASYELRYDTFGWLHIPTELGAL-YILVPCMLFGMIVHPNLNHNWLADVSWTIALYVEALAILPQLFMFQKRGGGAVESCISHFVYALAFGSFLHLVFWFFSYHELSGKGAGDHVGYMVILVQIGHMLMMADFLYYYFKSMKDGGPMMLPTHGG 283          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: XP_002908069.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY61152.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 272.3 bits (695), Expect = 1.700e-69
Identity = 131/274 (47.81%), Postives = 183/274 (66.79%), Query Frame = 0
Query:   19 FMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAG 293
            F+  H+ S  A W GF+++    + L SDGDFSF+MT GAF R+FGF  L  K ++ RS  G+SLKTL+LY  VF FRL+SI+ + GYLPYD+SGDW Y F+E V+L L    +YLV  RF  +Y+ R D+FG +HVP ++GAL Y+ +PC L  +L HP LN ++ +D +W  ++Y+E+VA+LPQL+MFQK+    VE  I H+V+A  F   L ++FW SSYHEL +    + VG  V+  Q  H+++M DF YYY  S++ G P+ LP  G
Sbjct:   11 FLTTHK-SNIALWSGFVVVVFFCYHLFSDGDFSFLMTMGAFVRAFGFAFLIFKAFSQRSVAGLSLKTLELYAFVFLFRLSSILRYQGYLPYDRSGDWLYSFLEIVALTLCCGVIYLVTTRFNSTYELRYDTFGWLHVPTELGAL-YILLPCILFGMLIHPNLNRNWFSDVSWTIALYIEAVAILPQLFMFQKRGGGAVESCISHFVYALAFGSFLHLVFWFSSYHELGEKDAGQHVGYMVIFVQIGHMLMMADFLYYYFKSMKEGGPMMLPTHG 282          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: XP_009526037.1 (hypothetical protein PHYSODRAFT_502839 [Phytophthora sojae] >EGZ16979.1 hypothetical protein PHYSODRAFT_502839 [Phytophthora sojae])

HSP 1 Score: 266.5 bits (680), Expect = 9.600e-68
Identity = 127/274 (46.35%), Postives = 182/274 (66.42%), Query Frame = 0
Query:   19 FMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAG 293
            F+ +H+ S  A W GF+++    + L SDGDFSF+MT GAF R+FGF  L  K ++ RS  G+SLKTL+LY  VF FRL+SI+ + GYLPYD+SGDW Y F+E V+L L    +YLV +RF  +Y+ R D+FG +H+P ++G L Y+ +PC    +L HP LN ++ +D  W  ++Y+E++A+LPQL+MFQK+    VE  I H+V+A  F   L ++FW SSYHEL +    + VG  V+  Q  H+++M DF YYY  S++ G P+ LP  G
Sbjct:   11 FLTQHK-SNIALWSGFVVVVFFCYHLFSDGDFSFLMTMGAFVRAFGFAFLIFKAFSQRSVAGLSLKTLELYAFVFLFRLSSILRYQGYLPYDRSGDWLYTFLEIVALTLCCGVIYLVTMRFNSTYELRYDTFGWLHLPTELGGL-YILLPCIFFGMLIHPNLNRNWTSDVAWTIALYIEAMAILPQLFMFQKRGGGAVESCISHFVYALSFGSFLHLVFWFSSYHELGEKDAGQHVGYTVIFVQIGHMLIMADFLYYYFKSMKDGGPMMLPTHG 282          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: CCA18024.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 265.8 bits (678), Expect = 1.600e-67
Identity = 125/265 (47.17%), Postives = 179/265 (67.55%), Query Frame = 0
Query:   29 AAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGG 294
            A W GF +L L  + L SDGDFSF+MT G+F R+FGF +L  K ++ +S +G+SLKT++LY  VFFFRL SI+ F GYLPYD+SGDW Y  +E  +L L    +YLV +++  SY+ R D+FG +H+P ++GAL Y  +PC L  ++ HP LN ++LAD +W  ++Y+E++A+LPQL+MFQK+    VE  I H+V+A  F   L ++FW  SYHEL      + VG  V++ Q  H+++M DF YYY  S++ G P+ LP  GG
Sbjct:   22 AIWSGFFVLVLFCYHLFSDGDFSFLMTLGSFVRAFGFAVLIFKAFSQKSVSGLSLKTVELYACVFFFRLASILRFQGYLPYDRSGDWLYTLLEVGALCLCCGVIYLVMVQYNSSYELRYDTFGWLHIPTELGAL-YTLLPCILFGMIVHPNLNHNWLADVSWTIALYVEALAILPQLFMFQKRGGGAVESCISHFVYALAFGSFLHLVFWFFSYHELSGKGAGEHVGYMVIIVQIGHMLMMADFLYYYFKSMKDGGPMMLPTHGG 285          
The following BLAST results are available for this feature:
BLAST of NO12G03740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR86389.11.500e-7347.60hypothetical protein ACHHYP_10601 [Achlya hypogyna... [more]
XP_008605157.12.900e-7249.45hypothetical protein SDRG_01411 [Saprolegnia dicli... [more]
XP_008867577.14.200e-7147.99hypothetical protein H310_04839 [Aphanomyces invad... [more]
XP_009825349.11.200e-7047.99hypothetical protein H257_03098 [Aphanomyces astac... [more]
XP_024574198.13.500e-7047.84er lumen protein retaining receptor [Plasmopara ha... [more]
XP_008906446.11.000e-6947.81hypothetical protein PPTG_12014 [Phytophthora para... [more]
CCI49508.11.000e-6946.91unnamed protein product [Albugo candida][more]
XP_002908069.11.700e-6947.81conserved hypothetical protein [Phytophthora infes... [more]
XP_009526037.19.600e-6846.35hypothetical protein PHYSODRAFT_502839 [Phytophtho... [more]
CCA18024.11.600e-6747.17conserved hypothetical protein [Albugo laibachii N... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010353NSK010353Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03740.1NO12G03740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592919gene_5552Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100355g6gene4843Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03740.1NO12G03740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03740 ID=NO12G03740|Name=NO12G03740|organism=Nannochloropsis oceanica|type=gene|length=2304bp
ATGGGTCAATCAAAgtaagtattgtttctatcaatatagccatgcttgcg
agcatcctgctcttttttcgctccagcacccatgctccccatgtctgccg
gcggccttggctcgtgccctcatcatcgaccccccatcgtttttacccaa
ccaaggcccttcccttttaagctcgtcatccctgtaaagtggtcgaaccc
cccctcccccttttgcaatacgagtgcacactcaacacttgatataagcg
tgtgcatattcaccatccctgtccccgtgtccctcactttccaatctccc
cctctctttttcacccttcctcttcctccttcatccttctcctcctcact
cacttcctcttcctttttcatccaaccagccaccaccgtcattggtgaga
gacatgatatcatttcttgtctccccccctcccctcaaacgtatatcggc
cttgtcttcccataattaaacaccttcactcaccccttcctcatcccttc
tctccctccttcatcccgatggcagAGGCGGAAACGTAAATATGCAATTG
GATCGATACCTCCGCTTCATGGGGAAACACCGCAACAGCCCCGCTGCCGC
GTGGGTCGGGTTTTTGCTCCTCTCCCTCGTGGTTTGGAAGCTAGTGAGTG
ACGGTGACTTTTCCTTCATCATGACGTATGGTGCCTTTGCCCGGTCCTTC
GGCTTTGGCCTGTTGGCTGTTAAGATATGGACGGCCAGAAGTGCTACGGG
GGTGTCGTTAAAGACCCTGCAGTTGTATGGCCTGgtgcgttagagggcga
gggaggggagggagggacgaagggagggagggaaggttacggcggcgttt
cgacttcggtgtttgtttatgggtgggatgccgtgtgactcaccctcgtt
ccctccctccctccccccctccctcttgtccgccttgatatcacgcacgg
ccagGTGTTCTTCTTCCGCCTCACGAGCATCATCCCTTTCTCGGGCTACC
TGCCCTACGACAAGAGCGGCGACTGGTTCTATCATTTTGTGgtacgtgcg
cctgcgaggcagggacggagggagggggggaaggacggagggaagcagtg
gaaggagggcagattggaacgaaaagggaaagaaacatgaagcaagattt
gactactcagccacccctctctccctcctccctcgtcctccctccctcct
tcccttcccccctccttttctcctcccagGAGTCCGTCTCTCTCTTCCTA
GTCCTCGTGGCCCTCTACCTCGTCAAGATTCGCTTCCCCCACTCATACGA
CGAGCGAACGGACAGTTTCGGGAACATGCACGTCCCGGATCAAGTCGGTG
CCCTGGTCTATCTCGCCATACCCTGTTTTCTCCTGGCCGTCCTGTTTCAT
CCGGgtaggttgctgtctgtctgtctgtctgtgtctgtctgtctgtgtgt
gtgtgtgtgtgtgtctctctctctctctctctctctctctctctctctct
ctctctctttctctctctctctctctctgtgttagtgtgcatgtcaaatc
ccctctctccctcctccatctcccccccctcccaatgccaggcatccacc
ccccctccctccctcctcccccccttcctcccccctccctccctccctcc
cccccttcctccccccagGCCTCAATTCGCATTTCCTCGCCGACACCACC
TGGGCCTTTTCCATGTACCTCGAGTCCGTTGCCATGCTCCCTCAGCTCTA
CATGTTCCAAAAACAGgtgcgcccctccctccctccctccctccctccct
ccctccctccagtcctcccaagtcgtggaggggctcaccggccgatgagt
ctttgccgcaggcttctcactccctccctccctccctccctccctccctc
cagTCCTCCCAAGTCGTGGAGGTGCTCATCGGCCACTGGGTCTTTGCCTC
GGGTTTTGCGCGAGTCCTGGACATGATCTTTTGGATGTCGTCTTACCACG
AGCTGGTCGACCACAGgtacgcccttcctccctccctccctccctccctc
tcttgcctggcctttggttgatcatgggcgtaaaatcgttggtccaggcc
gcctccattctcccttccttgacctaactccctccccccctccctccctc
cctccctcgcagCGGGTCCAAGATGGTGGGTGTCTTCGTCCTCCTCACGC
AGTTTATTCACATCATCCTCATGGTGGATTTTTTCTATTACTACCTCGTG
AGCGTACGGAGCGGTCTTCCCCTTCAATTGCCAAGGGCAGGGGGGCTGGT
GTAG
back to top

protein sequence of NO12G03740.1

>NO12G03740.1-protein ID=NO12G03740.1-protein|Name=NO12G03740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MGQSKGGNVNMQLDRYLRFMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDF
SFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSI
IPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSF
GNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVA
MLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSG
SKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGGLV*
back to top
Synonyms
Publications