NO12G03740.1, NO12G03740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03740.1
Unique NameNO12G03740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length888
Alignment locationchr12:1036639..1038942 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1036639..1038942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G03740.1 vs.
Match: EWM25670.1 (er lumen protein retaining receptor [Nannochloropsis gaditana])

HSP 1 Score: 558.9 bits (1439), Expect = 9.300e-156
Identity = 273/295 (92.54%), Postives = 284/295 (96.27%), Query Frame = 0
Query:    1 MGQSKGGNVNMQLDRYLRFMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGGLV 296
            MG+SKGGNVNMQLDRYLR + KHR SPA AWVGFLLLSLVVWKLVSDGDFSFIMTYGAFAR+FGFGLLAVK+WTARSATGVS KTLQLY LVFFFRLTSIIPFSGYLPYDKSGDWFYHFVES+SLFLVLV++YLVK+RFPHSYDERTDSFGN+HVP   GALVYLA+PC  LAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYL+SVRSGLPLQLPRAGGLV
Sbjct:   54 MGESKGGNVNMQLDRYLRLLSKHRQSPALAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGLV 348          
The following BLAST results are available for this feature:
BLAST of NO12G03740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25670.19.300e-15692.54er lumen protein retaining receptor [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03740NO12G03740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03740.1NO12G03740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03740.1.cds1NO12G03740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03740.1.cds2NO12G03740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03740.1.cds3NO12G03740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03740.1.cds4NO12G03740.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03740.1.cds5NO12G03740.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03740.1.cds6NO12G03740.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03740.1.cds7NO12G03740.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03740.1 ID=NO12G03740.1|Name=NO12G03740.1|organism=Nannochloropsis oceanica|type=mRNA|length=888bp
ATGGGTCAATCAAAAGGCGGAAACGTAAATATGCAATTGGATCGATACCT
CCGCTTCATGGGGAAACACCGCAACAGCCCCGCTGCCGCGTGGGTCGGGT
TTTTGCTCCTCTCCCTCGTGGTTTGGAAGCTAGTGAGTGACGGTGACTTT
TCCTTCATCATGACGTATGGTGCCTTTGCCCGGTCCTTCGGCTTTGGCCT
GTTGGCTGTTAAGATATGGACGGCCAGAAGTGCTACGGGGGTGTCGTTAA
AGACCCTGCAGTTGTATGGCCTGGTGTTCTTCTTCCGCCTCACGAGCATC
ATCCCTTTCTCGGGCTACCTGCCCTACGACAAGAGCGGCGACTGGTTCTA
TCATTTTGTGGAGTCCGTCTCTCTCTTCCTAGTCCTCGTGGCCCTCTACC
TCGTCAAGATTCGCTTCCCCCACTCATACGACGAGCGAACGGACAGTTTC
GGGAACATGCACGTCCCGGATCAAGTCGGTGCCCTGGTCTATCTCGCCAT
ACCCTGTTTTCTCCTGGCCGTCCTGTTTCATCCGGGCCTCAATTCGCATT
TCCTCGCCGACACCACCTGGGCCTTTTCCATGTACCTCGAGTCCGTTGCC
ATGCTCCCTCAGCTCTACATGTTCCAAAAACAGTCCTCCCAAGTCGTGGA
GGTGCTCATCGGCCACTGGGTCTTTGCCTCGGGTTTTGCGCGAGTCCTGG
ACATGATCTTTTGGATGTCGTCTTACCACGAGCTGGTCGACCACAGCGGG
TCCAAGATGGTGGGTGTCTTCGTCCTCCTCACGCAGTTTATTCACATCAT
CCTCATGGTGGATTTTTTCTATTACTACCTCGTGAGCGTACGGAGCGGTC
TTCCCCTTCAATTGCCAAGGGCAGGGGGGCTGGTGTAG
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protein sequence of NO12G03740.1

>NO12G03740.1-protein ID=NO12G03740.1-protein|Name=NO12G03740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MGQSKGGNVNMQLDRYLRFMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDF
SFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSI
IPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSF
GNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVA
MLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSG
SKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGGLV*
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mRNA from alignment at chr12:1036639..1038942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03740.1 ID=NO12G03740.1|Name=NO12G03740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp|location=Sequence derived from alignment at chr12:1036639..1038942- (Nannochloropsis oceanica)
ATGGGTCAATCAAAGTAAGTATTGTTTCTATCAATATAGCCATGCTTGCG AGCATCCTGCTCTTTTTTCGCTCCAGCACCCATGCTCCCCATGTCTGCCG GCGGCCTTGGCTCGTGCCCTCATCATCGACCCCCCATCGTTTTTACCCAA CCAAGGCCCTTCCCTTTTAAGCTCGTCATCCCTGTAAAGTGGTCGAACCC CCCCTCCCCCTTTTGCAATACGAGTGCACACTCAACACTTGATATAAGCG TGTGCATATTCACCATCCCTGTCCCCGTGTCCCTCACTTTCCAATCTCCC CCTCTCTTTTTCACCCTTCCTCTTCCTCCTTCATCCTTCTCCTCCTCACT CACTTCCTCTTCCTTTTTCATCCAACCAGCCACCACCGTCATTGGTGAGA GACATGATATCATTTCTTGTCTCCCCCCCTCCCCTCAAACGTATATCGGC CTTGTCTTCCCATAATTAAACACCTTCACTCACCCCTTCCTCATCCCTTC TCTCCCTCCTTCATCCCGATGGCAGAGGCGGAAACGTAAATATGCAATTG GATCGATACCTCCGCTTCATGGGGAAACACCGCAACAGCCCCGCTGCCGC GTGGGTCGGGTTTTTGCTCCTCTCCCTCGTGGTTTGGAAGCTAGTGAGTG ACGGTGACTTTTCCTTCATCATGACGTATGGTGCCTTTGCCCGGTCCTTC GGCTTTGGCCTGTTGGCTGTTAAGATATGGACGGCCAGAAGTGCTACGGG GGTGTCGTTAAAGACCCTGCAGTTGTATGGCCTGGTGCGTTAGAGGGCGA GGGAGGGGAGGGAGGGACGAAGGGAGGGAGGGAAGGTTACGGCGGCGTTT CGACTTCGGTGTTTGTTTATGGGTGGGATGCCGTGTGACTCACCCTCGTT CCCTCCCTCCCTCCCCCCCTCCCTCTTGTCCGCCTTGATATCACGCACGG CCAGGTGTTCTTCTTCCGCCTCACGAGCATCATCCCTTTCTCGGGCTACC TGCCCTACGACAAGAGCGGCGACTGGTTCTATCATTTTGTGGTACGTGCG CCTGCGAGGCAGGGACGGAGGGAGGGGGGGAAGGACGGAGGGAAGCAGTG GAAGGAGGGCAGATTGGAACGAAAAGGGAAAGAAACATGAAGCAAGATTT GACTACTCAGCCACCCCTCTCTCCCTCCTCCCTCGTCCTCCCTCCCTCCT TCCCTTCCCCCCTCCTTTTCTCCTCCCAGGAGTCCGTCTCTCTCTTCCTA GTCCTCGTGGCCCTCTACCTCGTCAAGATTCGCTTCCCCCACTCATACGA CGAGCGAACGGACAGTTTCGGGAACATGCACGTCCCGGATCAAGTCGGTG CCCTGGTCTATCTCGCCATACCCTGTTTTCTCCTGGCCGTCCTGTTTCAT CCGGGTAGGTTGCTGTCTGTCTGTCTGTCTGTGTCTGTCTGTCTGTGTGT GTGTGTGTGTGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTTTCTCTCTCTCTCTCTCTCTGTGTTAGTGTGCATGTCAAATC CCCTCTCTCCCTCCTCCATCTCCCCCCCCTCCCAATGCCAGGCATCCACC CCCCCTCCCTCCCTCCTCCCCCCCTTCCTCCCCCCTCCCTCCCTCCCTCC CCCCCTTCCTCCCCCCAGGCCTCAATTCGCATTTCCTCGCCGACACCACC TGGGCCTTTTCCATGTACCTCGAGTCCGTTGCCATGCTCCCTCAGCTCTA CATGTTCCAAAAACAGGTGCGCCCCTCCCTCCCTCCCTCCCTCCCTCCCT CCCTCCCTCCAGTCCTCCCAAGTCGTGGAGGGGCTCACCGGCCGATGAGT CTTTGCCGCAGGCTTCTCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC CAGTCCTCCCAAGTCGTGGAGGTGCTCATCGGCCACTGGGTCTTTGCCTC GGGTTTTGCGCGAGTCCTGGACATGATCTTTTGGATGTCGTCTTACCACG AGCTGGTCGACCACAGGTACGCCCTTCCTCCCTCCCTCCCTCCCTCCCTC TCTTGCCTGGCCTTTGGTTGATCATGGGCGTAAAATCGTTGGTCCAGGCC GCCTCCATTCTCCCTTCCTTGACCTAACTCCCTCCCCCCCTCCCTCCCTC CCTCCCTCGCAGCGGGTCCAAGATGGTGGGTGTCTTCGTCCTCCTCACGC AGTTTATTCACATCATCCTCATGGTGGATTTTTTCTATTACTACCTCGTG AGCGTACGGAGCGGTCTTCCCCTTCAATTGCCAAGGGCAGGGGGGCTGGT GTAG
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Coding sequence (CDS) from alignment at chr12:1036639..1038942-

>NO12G03740.1 ID=NO12G03740.1|Name=NO12G03740.1|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr12:1036639..1038942- (Nannochloropsis oceanica)
ATGGGTCAATCAAAAGGCGGAAACGTAAATATGCAATTGGATCGATACCT
CCGCTTCATGGGGAAACACCGCAACAGCCCCGCTGCCGCGTGGGTCGGGT
TTTTGCTCCTCTCCCTCGTGGTTTGGAAGCTAGTGAGTGACGGTGACTTT
TCCTTCATCATGACGTATGGTGCCTTTGCCCGGTCCTTCGGCTTTGGCCT
GTTGGCTGTTAAGATATGGACGGCCAGAAGTGCTACGGGGGTGTCGTTAA
AGACCCTGCAGTTGTATGGCCTGGTGTTCTTCTTCCGCCTCACGAGCATC
ATCCCTTTCTCGGGCTACCTGCCCTACGACAAGAGCGGCGACTGGTTCTA
TCATTTTGTGGAGTCCGTCTCTCTCTTCCTAGTCCTCGTGGCCCTCTACC
TCGTCAAGATTCGCTTCCCCCACTCATACGACGAGCGAACGGACAGTTTC
GGGAACATGCACGTCCCGGATCAAGTCGGTGCCCTGGTCTATCTCGCCAT
ACCCTGTTTTCTCCTGGCCGTCCTGTTTCATCCGGGCCTCAATTCGCATT
TCCTCGCCGACACCACCTGGGCCTTTTCCATGTACCTCGAGTCCGTTGCC
ATGCTCCCTCAGCTCTACATGTTCCAAAAACAGTCCTCCCAAGTCGTGGA
GGTGCTCATCGGCCACTGGGTCTTTGCCTCGGGTTTTGCGCGAGTCCTGG
ACATGATCTTTTGGATGTCGTCTTACCACGAGCTGGTCGACCACAGCGGG
TCCAAGATGGTGGGTGTCTTCGTCCTCCTCACGCAGTTTATTCACATCAT
CCTCATGGTGGATTTTTTCTATTACTACCTCGTGAGCGTACGGAGCGGTC
TTCCCCTTCAATTGCCAAGGGCAGGGGGGCTGGTGTAG
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Synonyms
Publications