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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:1036639..1038942 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03740.1 vs.
Match: EWM25670.1 (er lumen protein retaining receptor [Nannochloropsis gaditana]) HSP 1 Score: 558.9 bits (1439), Expect = 9.300e-156 Identity = 273/295 (92.54%), Postives = 284/295 (96.27%), Query Frame = 0
Query: 1 MGQSKGGNVNMQLDRYLRFMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGGLV 296
MG+SKGGNVNMQLDRYLR + KHR SPA AWVGFLLLSLVVWKLVSDGDFSFIMTYGAFAR+FGFGLLAVK+WTARSATGVS KTLQLY LVFFFRLTSIIPFSGYLPYDKSGDWFYHFVES+SLFLVLV++YLVK+RFPHSYDERTDSFGN+HVP GALVYLA+PC LAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYL+SVRSGLPLQLPRAGGLV
Sbjct: 54 MGESKGGNVNMQLDRYLRLLSKHRQSPALAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGLV 348
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G03740.1 ID=NO12G03740.1|Name=NO12G03740.1|organism=Nannochloropsis oceanica|type=mRNA|length=888bp ATGGGTCAATCAAAAGGCGGAAACGTAAATATGCAATTGGATCGATACCT CCGCTTCATGGGGAAACACCGCAACAGCCCCGCTGCCGCGTGGGTCGGGT TTTTGCTCCTCTCCCTCGTGGTTTGGAAGCTAGTGAGTGACGGTGACTTT TCCTTCATCATGACGTATGGTGCCTTTGCCCGGTCCTTCGGCTTTGGCCT GTTGGCTGTTAAGATATGGACGGCCAGAAGTGCTACGGGGGTGTCGTTAA AGACCCTGCAGTTGTATGGCCTGGTGTTCTTCTTCCGCCTCACGAGCATC ATCCCTTTCTCGGGCTACCTGCCCTACGACAAGAGCGGCGACTGGTTCTA TCATTTTGTGGAGTCCGTCTCTCTCTTCCTAGTCCTCGTGGCCCTCTACC TCGTCAAGATTCGCTTCCCCCACTCATACGACGAGCGAACGGACAGTTTC GGGAACATGCACGTCCCGGATCAAGTCGGTGCCCTGGTCTATCTCGCCAT ACCCTGTTTTCTCCTGGCCGTCCTGTTTCATCCGGGCCTCAATTCGCATT TCCTCGCCGACACCACCTGGGCCTTTTCCATGTACCTCGAGTCCGTTGCC ATGCTCCCTCAGCTCTACATGTTCCAAAAACAGTCCTCCCAAGTCGTGGA GGTGCTCATCGGCCACTGGGTCTTTGCCTCGGGTTTTGCGCGAGTCCTGG ACATGATCTTTTGGATGTCGTCTTACCACGAGCTGGTCGACCACAGCGGG TCCAAGATGGTGGGTGTCTTCGTCCTCCTCACGCAGTTTATTCACATCAT CCTCATGGTGGATTTTTTCTATTACTACCTCGTGAGCGTACGGAGCGGTC TTCCCCTTCAATTGCCAAGGGCAGGGGGGCTGGTGTAG back to topprotein sequence of NO12G03740.1 >NO12G03740.1-protein ID=NO12G03740.1-protein|Name=NO12G03740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp MGQSKGGNVNMQLDRYLRFMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDF SFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSI IPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSF GNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVA MLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSG SKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGGLV* back to topmRNA from alignment at chr12:1036639..1038942- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G03740.1 ID=NO12G03740.1|Name=NO12G03740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp|location=Sequence derived from alignment at chr12:1036639..1038942- (Nannochloropsis oceanica) ATGGGTCAATCAAAGTAAGTATTGTTTCTATCAATATAGCCATGCTTGCG
AGCATCCTGCTCTTTTTTCGCTCCAGCACCCATGCTCCCCATGTCTGCCG
GCGGCCTTGGCTCGTGCCCTCATCATCGACCCCCCATCGTTTTTACCCAA
CCAAGGCCCTTCCCTTTTAAGCTCGTCATCCCTGTAAAGTGGTCGAACCC
CCCCTCCCCCTTTTGCAATACGAGTGCACACTCAACACTTGATATAAGCG
TGTGCATATTCACCATCCCTGTCCCCGTGTCCCTCACTTTCCAATCTCCC
CCTCTCTTTTTCACCCTTCCTCTTCCTCCTTCATCCTTCTCCTCCTCACT
CACTTCCTCTTCCTTTTTCATCCAACCAGCCACCACCGTCATTGGTGAGA
GACATGATATCATTTCTTGTCTCCCCCCCTCCCCTCAAACGTATATCGGC
CTTGTCTTCCCATAATTAAACACCTTCACTCACCCCTTCCTCATCCCTTC
TCTCCCTCCTTCATCCCGATGGCAGAGGCGGAAACGTAAATATGCAATTG
GATCGATACCTCCGCTTCATGGGGAAACACCGCAACAGCCCCGCTGCCGC
GTGGGTCGGGTTTTTGCTCCTCTCCCTCGTGGTTTGGAAGCTAGTGAGTG
ACGGTGACTTTTCCTTCATCATGACGTATGGTGCCTTTGCCCGGTCCTTC
GGCTTTGGCCTGTTGGCTGTTAAGATATGGACGGCCAGAAGTGCTACGGG
GGTGTCGTTAAAGACCCTGCAGTTGTATGGCCTGGTGCGTTAGAGGGCGA
GGGAGGGGAGGGAGGGACGAAGGGAGGGAGGGAAGGTTACGGCGGCGTTT
CGACTTCGGTGTTTGTTTATGGGTGGGATGCCGTGTGACTCACCCTCGTT
CCCTCCCTCCCTCCCCCCCTCCCTCTTGTCCGCCTTGATATCACGCACGG
CCAGGTGTTCTTCTTCCGCCTCACGAGCATCATCCCTTTCTCGGGCTACC
TGCCCTACGACAAGAGCGGCGACTGGTTCTATCATTTTGTGGTACGTGCG
CCTGCGAGGCAGGGACGGAGGGAGGGGGGGAAGGACGGAGGGAAGCAGTG
GAAGGAGGGCAGATTGGAACGAAAAGGGAAAGAAACATGAAGCAAGATTT
GACTACTCAGCCACCCCTCTCTCCCTCCTCCCTCGTCCTCCCTCCCTCCT
TCCCTTCCCCCCTCCTTTTCTCCTCCCAGGAGTCCGTCTCTCTCTTCCTA
GTCCTCGTGGCCCTCTACCTCGTCAAGATTCGCTTCCCCCACTCATACGA
CGAGCGAACGGACAGTTTCGGGAACATGCACGTCCCGGATCAAGTCGGTG
CCCTGGTCTATCTCGCCATACCCTGTTTTCTCCTGGCCGTCCTGTTTCAT
CCGGGTAGGTTGCTGTCTGTCTGTCTGTCTGTGTCTGTCTGTCTGTGTGT
GTGTGTGTGTGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTTTCTCTCTCTCTCTCTCTCTGTGTTAGTGTGCATGTCAAATC
CCCTCTCTCCCTCCTCCATCTCCCCCCCCTCCCAATGCCAGGCATCCACC
CCCCCTCCCTCCCTCCTCCCCCCCTTCCTCCCCCCTCCCTCCCTCCCTCC
CCCCCTTCCTCCCCCCAGGCCTCAATTCGCATTTCCTCGCCGACACCACC
TGGGCCTTTTCCATGTACCTCGAGTCCGTTGCCATGCTCCCTCAGCTCTA
CATGTTCCAAAAACAGGTGCGCCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCAGTCCTCCCAAGTCGTGGAGGGGCTCACCGGCCGATGAGT
CTTTGCCGCAGGCTTCTCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CAGTCCTCCCAAGTCGTGGAGGTGCTCATCGGCCACTGGGTCTTTGCCTC
GGGTTTTGCGCGAGTCCTGGACATGATCTTTTGGATGTCGTCTTACCACG
AGCTGGTCGACCACAGGTACGCCCTTCCTCCCTCCCTCCCTCCCTCCCTC
TCTTGCCTGGCCTTTGGTTGATCATGGGCGTAAAATCGTTGGTCCAGGCC
GCCTCCATTCTCCCTTCCTTGACCTAACTCCCTCCCCCCCTCCCTCCCTC
CCTCCCTCGCAGCGGGTCCAAGATGGTGGGTGTCTTCGTCCTCCTCACGC
AGTTTATTCACATCATCCTCATGGTGGATTTTTTCTATTACTACCTCGTG
AGCGTACGGAGCGGTCTTCCCCTTCAATTGCCAAGGGCAGGGGGGCTGGT
GTAG back to topCoding sequence (CDS) from alignment at chr12:1036639..1038942- >NO12G03740.1 ID=NO12G03740.1|Name=NO12G03740.1|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr12:1036639..1038942- (Nannochloropsis oceanica) ATGGGTCAATCAAAAGGCGGAAACGTAAATATGCAATTGGATCGATACCT CCGCTTCATGGGGAAACACCGCAACAGCCCCGCTGCCGCGTGGGTCGGGT TTTTGCTCCTCTCCCTCGTGGTTTGGAAGCTAGTGAGTGACGGTGACTTT TCCTTCATCATGACGTATGGTGCCTTTGCCCGGTCCTTCGGCTTTGGCCT GTTGGCTGTTAAGATATGGACGGCCAGAAGTGCTACGGGGGTGTCGTTAA AGACCCTGCAGTTGTATGGCCTGGTGTTCTTCTTCCGCCTCACGAGCATC ATCCCTTTCTCGGGCTACCTGCCCTACGACAAGAGCGGCGACTGGTTCTA TCATTTTGTGGAGTCCGTCTCTCTCTTCCTAGTCCTCGTGGCCCTCTACC TCGTCAAGATTCGCTTCCCCCACTCATACGACGAGCGAACGGACAGTTTC GGGAACATGCACGTCCCGGATCAAGTCGGTGCCCTGGTCTATCTCGCCAT ACCCTGTTTTCTCCTGGCCGTCCTGTTTCATCCGGGCCTCAATTCGCATT TCCTCGCCGACACCACCTGGGCCTTTTCCATGTACCTCGAGTCCGTTGCC ATGCTCCCTCAGCTCTACATGTTCCAAAAACAGTCCTCCCAAGTCGTGGA GGTGCTCATCGGCCACTGGGTCTTTGCCTCGGGTTTTGCGCGAGTCCTGG ACATGATCTTTTGGATGTCGTCTTACCACGAGCTGGTCGACCACAGCGGG TCCAAGATGGTGGGTGTCTTCGTCCTCCTCACGCAGTTTATTCACATCAT CCTCATGGTGGATTTTTTCTATTACTACCTCGTGAGCGTACGGAGCGGTC TTCCCCTTCAATTGCCAAGGGCAGGGGGGCTGGTGTAG back to top
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