NO12G03570, NO12G03570 (gene) Nannochloropsis oceanica

Overview
NameNO12G03570
Unique NameNO12G03570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1112
Alignment locationchr12:975679..976790 +

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Properties
Property NameValue
DescriptionPutative small multi-drug export
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:975679..976790 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009577Sm_multidrug_ex
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO12G03570 vs. NCBI_GenBank
Match: EWM25686.1 (Putative small multi-drug export [Nannochloropsis gaditana])

HSP 1 Score: 312.4 bits (799), Expect = 1.800e-81
Identity = 155/197 (78.68%), Postives = 176/197 (89.34%), Query Frame = 0
Query:  145 TSIPQALAAAVEKGEHLHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPVGLWMGIPPAQTFALACVGNFVPVPFILMLLKNVPWLMEKVTPVLEKKLKDMTGARMNWQALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIVSAAAIMTALVLAGLWGAVAVGGGLLVSLVVQQLSKRGKDQK 342
            TS+P+ALAAAVE GEHLHLGQR+A  +  +TGWP+WV LM ISALPVVELRGGVPVGLWMGIP AQTF LAC+GN +PVP IL++L+N PWLMEKVTPVLEKKLKD TGA+MNWQALA+FVGVPLPGTGAWTGAAIAALFKLSYAES  G+VVGI+SAAAIMTALV AG+WGA+AVGGGLL+S   QQL +R K++K
Sbjct:  136 TSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLGER-KEKK 331          
BLAST of NO12G03570 vs. NCBI_GenBank
Match: CBN77178.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 145.2 bits (365), Expect = 3.700e-31
Identity = 84/188 (44.68%), Postives = 117/188 (62.23%), Query Frame = 0
Query:  149 QALAAAVEKGEHLHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPVGLWMGIPPAQTFALACVGNFVPVPFILMLLKNVPWLMEKVTPVLEKKLKDMTG---ARMNWQALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIVSAAAIMTALVLAGLWGAVAVGGGLLVSLVVQQL 334
            +A+ A  E   HLH+GQ++A   R + G PDW  LM ISA+PVVELRGGVPVG+WMG+P A+ F L   GN +P+P IL+ L++  ++ +   PVL++  +   G    +    AL +FVG+PLPGTGAWTGA  A L  + + +++  + VG+VSA  IM+ L LAG  GA+     L V  V   L
Sbjct:  139 KAIVAGSEDEAHLHVGQKVAKFFR-RGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRS-SFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFVGVVSAGVIMSCLTLAGKAGALVATAVLAVFCVTNIL 324          
BLAST of NO12G03570 vs. NCBI_GenBank
Match: OLP83814.1 (hypothetical protein AK812_SmicGene35375 [Symbiodinium microadriaticum])

HSP 1 Score: 139.8 bits (351), Expect = 1.600e-29
Identity = 86/189 (45.50%), Postives = 117/189 (61.90%), Query Frame = 0
Query:  150 ALAAAVEKGEHLHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPVGLWMGIPPAQTFALACVGNFVPVPFILMLLKNVPWLMEKVTPVLEKKLK--DMTGARMNWQALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIVSAAAIMTALVLAGLWGAVAVGGGLLVSLVVQQLSKR 337
            A AAAV      HLG RLA  ++     PDW ILM+ISALP+VELRGGVPVGLWMG+   Q   L  +GN +P+P IL  L+ +  + + ++P+L++  +  +  GA   W  +A FVGVPLPGTGAWTGA +A L  +   E++  V+ G+V AA IM +L LAG +G   V    +V+L  + L  R
Sbjct:  123 AKAAAV--AARPHLGIRLATKMKTCFSIPDWAILMMISALPLVELRGGVPVGLWMGLAVPQVMLLCILGNMIPIPLILAALR-IEQMKQLLSPLLKRAAQKTEPIGAHDRWVGVAAFVGVPLPGTGAWTGAMVAYLLGMDLWEAITSVLAGVVVAACIMASLTLAGWYGCAFVVMLGIVALASRWLQMR 308          
BLAST of NO12G03570 vs. NCBI_GenBank
Match: OEU17081.1 (ferredoxin NADP reductase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 137.5 bits (345), Expect = 7.700e-29
Identity = 82/186 (44.09%), Postives = 111/186 (59.68%), Query Frame = 0
Query:  150 ALAAAVEKGEHLHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPVGLWMGIPPAQTFALACVGNFVPVPFILMLLKNVPWLMEKVTPVLEKKLKDMTG-----ARMNWQALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIVSAAAIMTALVLAGLWGAVAVGGGLLVSLVV 331
            A  A VE  EHLH GQ++AN   +  G P W +L  ISA+PVVELRG +PVG+WMG+P  Q      +GN +P+  +L LLKN P L + ++P+L +  K   G         W +LA FVG+PLPGTGAWTGA  + L  +    +L  +  G+VSA  IMTAL LAG       GG + +S+++
Sbjct:  120 AKKAVVETVEHLHTGQKIANFF-MSFGLPKWAVLATISAMPVVELRGAIPVGVWMGLPIQQVLLTCVIGNMIPIVPLLFLLKN-PSLKKLMSPILNRAEKKAAGLGVGSLEKQWVSLAAFVGIPLPGTGAWTGAMGSFLLGMPTLFALSSIFAGVVSAGLIMTALTLAG-----RTGGLIAISVLI 298          
BLAST of NO12G03570 vs. NCBI_GenBank
Match: GAX17478.1 (ferredoxin--NADP+ reductase [Fistulifera solaris])

HSP 1 Score: 134.4 bits (337), Expect = 6.600e-28
Identity = 82/182 (45.05%), Postives = 115/182 (63.19%), Query Frame = 0
Query:  161 LHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPVGLWMGIPPAQTFALACVGNFVPVPFILMLLKNVPWLMEKVTPVL---EKKLKDM--TGARMNWQALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIVSAAAIMTALVLAGLWGAVAVGGGLLVSLVVQQLSKRG 338
            LHLGQ++AN  R   G PD  +L +ISALP+VELRG +PVG+WMG+P ++   +  +GN +P+  +L+LL+N   L   + P+L   EKK K++     +  W +LA FVG+PLPGTGAWTGA  A L  +  A +   +  G+VSA  IMTA+ LAG  G +A    LL+   + +LSK G
Sbjct:  117 LHLGQKIANYFRT-FGIPDLGVLTIISALPIVELRGAIPVGIWMGLPISKVLPVCILGNMIPILPLLLLLRN-KTLKNAMNPILTQAEKKTKELGIGSVQKQWASLATFVGIPLPGTGAWTGAMGAFLLGMPLAVAFTSIFAGVVSAGVIMTAITLAGKAGGIAALAALLLYAGI-ELSKGG 295          
BLAST of NO12G03570 vs. NCBI_GenBank
Match: GAX13963.1 (ferredoxin--NADP+ reductase [Fistulifera solaris])

HSP 1 Score: 134.4 bits (337), Expect = 6.600e-28
Identity = 82/182 (45.05%), Postives = 115/182 (63.19%), Query Frame = 0
Query:  161 LHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPVGLWMGIPPAQTFALACVGNFVPVPFILMLLKNVPWLMEKVTPVL---EKKLKDM--TGARMNWQALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIVSAAAIMTALVLAGLWGAVAVGGGLLVSLVVQQLSKRG 338
            LHLGQ++AN  R   G PD  +L +ISALP+VELRG +PVG+WMG+P ++   +  +GN +P+  +L+LL+N   L   + P+L   EKK K++     +  W +LA FVG+PLPGTGAWTGA  A L  +  A +   +  G+VSA  IMTA+ LAG  G +A    LL+   + +LSK G
Sbjct:  117 LHLGQKIANYFRT-FGIPDLGVLTIISALPIVELRGAIPVGIWMGLPISKVLPVCILGNMIPILPLLLLLRN-KTLKNAMNPILTQAEKKTKELGIGSVQKQWASLATFVGIPLPGTGAWTGAMGAFLLGMPLAVAFTSIFAGVVSAGVIMTAITLAGKAGGIAALAALLLYAGI-ELSKGG 295          
BLAST of NO12G03570 vs. NCBI_GenBank
Match: XP_005535525.1 (similar to small multidrug export protein qacE [Cyanidioschyzon merolae strain 10D] >BAM79239.1 similar to small multidrug export protein qacE [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 130.6 bits (327), Expect = 9.500e-27
Identity = 79/187 (42.25%), Postives = 109/187 (58.29%), Query Frame = 0
Query:  144 TTSIPQALAAAVEKGEH-LHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPVGLWMGIPPAQTFALACVGNFVPVPFILMLLKNVPWLMEKVTPVLEKKLKDMTG----ARMNWQALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIVSAAAIMTALVLAGLWGAVAVGGGLL 326
            T  +P A        +H  HLG R+A  +R +T  PDW  LM++SALPVVELRGGVPVGLW+G+ PA+TF    +GN +P+PF++  L++   +     P+L+   + +            ALA+FVGVPLPGTGAW+GA  A L ++    +L  +  G+  A  IM ALVL G  G + V   LL
Sbjct:   58 TVRVPVATVGVGSVEQHQKHLGHRIAFWLRRETRLPDWATLMLVSALPVVELRGGVPVGLWLGLSPAETFLFCVIGNMLPIPFLVFGLRH-ERMRRLARPLLDSVARRLPSHANTPSSQALALALFVGVPLPGTGAWSGAIAAFLLQMDIWLALVSIAAGVAIAGCIMIALVLMGRIGGLIVAFALL 243          
BLAST of NO12G03570 vs. NCBI_GenBank
Match: GAQ78820.1 (hypothetical protein KFL_000190380 [Klebsormidium nitens])

HSP 1 Score: 125.9 bits (315), Expect = 2.300e-25
Identity = 77/190 (40.53%), Postives = 113/190 (59.47%), Query Frame = 0
Query:  158 GEHLHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPVGLWMGIPPAQTFALACVGNFVPVPFILMLLKNV-PWLME------KVTPVLEKKLKDMTGARMNWQ--ALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIVSAAAIMTALVLAGLWGAVAVGGGLLVSLVVQQLSKRGK 339
            G HL LGQR+A A+R   G PDWV +++++ALPVVELRG +PVG W+G+ P Q + LA +GN +P+PF++  +  V  WL++      K    L K+ +      + ++   L +FV VPLP TGAW+GA  A L  L + ES+   + G++ A AI+TAL   G  GA+  G GL  + +    + R K
Sbjct:   77 GGHLSLGQRIAVALR-SLGLPDWVTIILVAALPVVELRGAIPVGYWLGLKPIQVYGLAVLGNMLPIPFVIAYVGKVSDWLVQRSGLAKKFFEWLFKRTRSRADLLVKYRTLGLTLFVAVPLPLTGAWSGAIGAHLLGLPFWESIAANLAGVMIAGAIVTALCELGYAGALIAGAGLFTAAIAAFWTSRRK 265          
BLAST of NO12G03570 vs. NCBI_GenBank
Match: GAU46314.1 (hypothetical protein TSUD_243360 [Trifolium subterraneum])

HSP 1 Score: 119.4 bits (298), Expect = 2.200e-23
Identity = 67/171 (39.18%), Postives = 100/171 (58.48%), Query Frame = 0
Query:  153 AAVEKGEHLHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPVGLWMGIPPAQTFALACVGNFVPVPFILMLLKNVPWLMEKVTP-------VLEKKLKDMTG--ARMNWQALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIVSAAAIMTALVLAGL 315
            AAV+  +    G ++AN++R K GWPDWV++  ++ LPV+ELRG +PVG W+ + PA    L+ +GN VPVPFI++ LK     +   +P       +L K  K+  G      W  L +FV VP PGTGAWTGA IA++ ++ +  ++     G+V A  ++  LV  GL
Sbjct:    5 AAVDSIKASGFGLKIANSLR-KLGWPDWVVVFTLATLPVLELRGAIPVGYWLQLNPATLTVLSILGNMVPVPFIILYLKRFASFLASKSPSASRLLDILFKNAKEKAGPVEEFQWLGLMLFVAVPFPGTGAWTGAIIASILEMPFWAAVSANFFGVVFAGLLVNLLVNLGL 174          
BLAST of NO12G03570 vs. NCBI_GenBank
Match: XP_003613520.2 (uncharacterized protein LOC11414720 [Medicago truncatula] >AES96478.2 small multi-drug export protein, putative [Medicago truncatula])

HSP 1 Score: 115.9 bits (289), Expect = 2.400e-22
Identity = 67/177 (37.85%), Postives = 100/177 (56.50%), Query Frame = 0
Query:  154 AVEKGEHLHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPVGLWMGIPPAQTFALACVGNFVPVPFILMLLKNVPWLMEKVTP-------VLEKKLKDMTG--ARMNWQALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIVSAAAIMTALVLAGLWGAVAVG 322
            AV+  +    G ++AN++R K GWPDWV++  ++ LPV+ELRG +PVG W+ + PA    L+ +GN VPVPFI++ LK     +   +P       +L K  K   G      W  L +FV VP PGTGAW+GA IA++  + +  ++     G+V A  ++  LV  GL  A+  G
Sbjct:  113 AVDSIKASGFGLKIANSLR-KLGWPDWVVVFTLATLPVLELRGAIPVGYWLQLDPASLTVLSILGNMVPVPFIILYLKRFASFLASKSPSASRFLDILFKNAKAKAGPVEEFQWLGLMLFVAVPFPGTGAWSGAIIASILDMPFWPAVSANFFGVVFAGMLVNLLVNLGLKYAIITG 288          
The following BLAST results are available for this feature:
BLAST of NO12G03570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25686.11.800e-8178.68Putative small multi-drug export [Nannochloropsis ... [more]
CBN77178.13.700e-3144.68conserved unknown protein [Ectocarpus siliculosus][more]
OLP83814.11.600e-2945.50hypothetical protein AK812_SmicGene35375 [Symbiodi... [more]
OEU17081.17.700e-2944.09ferredoxin NADP reductase [Fragilariopsis cylindru... [more]
GAX17478.16.600e-2845.05ferredoxin--NADP+ reductase [Fistulifera solaris][more]
GAX13963.16.600e-2845.05ferredoxin--NADP+ reductase [Fistulifera solaris][more]
XP_005535525.19.500e-2742.25similar to small multidrug export protein qacE [Cy... [more]
GAQ78820.12.300e-2540.53hypothetical protein KFL_000190380 [Klebsormidium ... [more]
GAU46314.12.200e-2339.18hypothetical protein TSUD_243360 [Trifolium subter... [more]
XP_003613520.22.400e-2237.85uncharacterized protein LOC11414720 [Medicago trun... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010322NSK010322Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03570.1NO12G03570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529194gene_5531Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100768g2gene4828Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03570.1NO12G03570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03570 ID=NO12G03570|Name=NO12G03570|organism=Nannochloropsis oceanica|type=gene|length=1112bp
ACAGAGACGAAACTATGCGCCAACCCTTGCTCCGCGGTCCCCTCCTTCTC
ATCGCCTTGGCCGCTACTACTACGTACACCAATGCGGCAGTGCTCTTCCC
GTCGACGCGGCACGCTGCATTTTTTCCCACGACTGCTGTGGCAGGCCTAG
CCGCCACCACCCCACTCCGGGCTTCGACAGGTCCCTATTCCTCTTATTCC
AGTAGCACTAGCATTGTCAACAGACGGAACCCCGCACGGACCGCGGCCTT
CCTGCACATGTCCACATCCTCCTCTTCCTCCTCTTCTTCTTCATCCGTCC
CACTACTATTTCTTAAAACGAAGGGCGGTAAGACCCCACCCATGACCTCT
CCTCCTGTCTCCCCCTCCCCTGAGCGTCGTCAACGCACCCGCCGGCTCCT
TGCTCTAGCCAGTGCTGGCGTCGCTTTGGCGCTCATCACTTGCACCACGT
CCATCCCCCAGGCGCTGGCCGCGGCAGTTGAAAAAGGAGAGCACCTTCAC
CTTGGACAACGCCTTGCGAATGCCGTCCGCGTCAAAACCGGATGGCCTGA
CTGGGTCATTCTCATGGTCATCTCGGCACTACCAGTCGTCGAGCTTCGAG
GCGGGGTTCCCGTGGGGCTTTGGATGGGTATCCCTCCTGCGCAGACTTTC
GCGCTGGCCTGCGTGGGGAACTTCGTGCCGGTGCCCTTTATCTTAATGCT
GCTAAAGAATGTGCCCTGGTTGATGGAGAAGGTGACGCCGGTGTTGGAAA
AGAAGCTGAAAGATATGACCGGGGCCAGGATGAACTGGCAAGCCTTGGCG
GTGTTTGTGGGCGTGCCATTGCCAGGGACGGGCGCATGGACGGGAGCAGC
GATTGCGGCCTTGTTTAAGTTGTCATATGCTGAGTCGTTGTTTGGAGTGG
TGGTAGGCATTGTCTCGGCGGCTGCCATCATGACGGCCTTGGTGTTGGCT
GGCTTGTGGGGGGCGGTAGCAGTGGGAGGGGGTTTGCTAGTGAGTTTGGT
GGTGCAGCAGCTGAGCAAGAGGGGAAAGGACCAGAAGTGACGAAAAGGAA
GTGGGAGGGTGAGGGAAGGGAGGTTAGAAATTAAAGAATCAAGAAAAAAA
GTAACCATATCC
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protein sequence of NO12G03570.1

>NO12G03570.1-protein ID=NO12G03570.1-protein|Name=NO12G03570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MRQPLLRGPLLLIALAATTTYTNAAVLFPSTRHAAFFPTTAVAGLAATTP
LRASTGPYSSYSSSTSIVNRRNPARTAAFLHMSTSSSSSSSSSSVPLLFL
KTKGGKTPPMTSPPVSPSPERRQRTRRLLALASAGVALALITCTTSIPQA
LAAAVEKGEHLHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPV
GLWMGIPPAQTFALACVGNFVPVPFILMLLKNVPWLMEKVTPVLEKKLKD
MTGARMNWQALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIV
SAAAIMTALVLAGLWGAVAVGGGLLVSLVVQQLSKRGKDQK*
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Synonyms
Publications