NO12G03490, NO12G03490 (gene) Nannochloropsis oceanica

Overview
NameNO12G03490
Unique NameNO12G03490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3287
Alignment locationchr12:955036..958322 +

Link to JBrowse

Properties
Property NameValue
DescriptionLow-co2-inducible protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:955036..958322 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026319ZC2HC1
Homology
BLAST of NO12G03490 vs. NCBI_GenBank
Match: XP_005853796.1 (low-co2-inducible protein, partial [Nannochloropsis gaditana CCMP526] >EKU22564.1 low-co2-inducible protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 173.7 bits (439), Expect = 2.300e-39
Identity = 133/310 (42.90%), Postives = 171/310 (55.16%), Query Frame = 0
Query:  490 TTHVYPCELCGRSFNQRALSVHSRVCQKVFISTRPRFDSRQRRTQGTEAEKYVKQQLMRPLVNRRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRTDIATLAATRRPLPQKQVKRQYITGTTFSSLPSVSLDSTAAAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQGMLLGARHRVVKESWG-GRVVGGRFDAGGGSAETRGGRGGRR 799
            T H+ PC  CGR FN+RAL VH RVC+KVF STRP ++SRQ R +G E+    K               XXXXXXXXXXXXX                                              D+ D  +  ++ RP   + V R+ ++  T           T+ + P ++ GKKWL+QSQ FR ML+ANR +A AE++GRPVSPTLLA L+SSA+AASG  +Q L+PCPHC R++NEQAA RHIPKC+DI+AKPS L KG+G+ LGA  R  K   G GR++ G   A  GS   +G R  R+
Sbjct:  408 TVHLVPCPSCGRKFNERALLVHQRVCEKVFRSTRPAYNSRQHRLRGFESGTGPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDTPEDGFSMPCEPSTQVPAATPSSSARPTSEYRATRHSTRK----DKDDQRSTGSSSRPAYPEPVHRKALSPMT-----------TSPSEPNSQ-GKKWLEQSQNFRTMLRANRLIADAERKGRPVSPTLLAVLASSASAASGHSNQHLIPCPHCGRRFNEQAADRHIPKCQDIKAKPSMLRKGEGISLGAASRRSKGEGGRGRIINGGL-APRGSPRGKGLRAERK 700          
BLAST of NO12G03490 vs. NCBI_GenBank
Match: GBG31944.1 (Zinc finger C2HC domain-containing protein CBG14627 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 89.4 bits (220), Expect = 5.700e-14
Identity = 75/287 (26.13%), Postives = 105/287 (36.59%), Query Frame = 0
Query:  482 TGEEVER--PTTHVYPCELCGRSFNQRALSVHSRVCQKVFISTRPRFDSRQRRTQGTEAEKYVKQQLMRPLVNRRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRTDIATLAATRRPLPQKQVKRQYITGTTFSSLPSVSLDSTAAAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQGMLLGARHR 767
            TGEE+    P+  +YPC  CGR F +  L  HS+VC+KVF   R  FD+ Q R +G                                                                                             + P   + VK     G + +     S  +T  +      G KW +QSQ  R  +K N+ +A+A+ +G+ +        SS     +      LVPCPHC R +NE+AA RHIP+CKD +AKP+RL +G G    AR R
Sbjct:  441 TGEEIPEYAPSEPLYPCPSCGRKFRKPTLEKHSKVCKKVFKQKREAFDTTQARLKG-------------------------------------------------------------------------------------------VMQNPDDARVVKSALSKGASRAGAARASSGATKKS-----GGNKWKKQSQALREAMKYNKILAKAKADGKDI--------SSVPPPPTSQDDSDLVPCPHCGRTFNEKAAERHIPRCKDTKAKPTRLVRGGGKNAAARPR 623          
BLAST of NO12G03490 vs. NCBI_GenBank
Match: XP_009038970.1 (hypothetical protein AURANDRAFT_65724 [Aureococcus anophagefferens] >EGB06395.1 hypothetical protein AURANDRAFT_65724 [Aureococcus anophagefferens])

HSP 1 Score: 81.3 bits (199), Expect = 1.500e-11
Identity = 46/105 (43.81%), Postives = 59/105 (56.19%), Query Frame = 0
Query:  660 AAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQGMLLGAR 765
            AA P  +D KKW  QS   R  ++A R VA AEK G+P  P +           +     S V CPHC R +NE+AA RHIPKC+ I+AKP  L +G G  +G+R
Sbjct:  552 AAAPGGKD-KKWKAQSNQLREAMQAMRGVAAAEKAGKPPPPMV-----------ASTPDPSFVQCPHCSRTFNEKAAERHIPKCQSIKAKPKSLARGGGRTIGSR 644          
BLAST of NO12G03490 vs. NCBI_GenBank
Match: CBN78272.1 (Zinc finger, C2H2 type family protein [Ectocarpus siliculosus])

HSP 1 Score: 79.0 bits (193), Expect = 7.600e-11
Identity = 94/286 (32.87%), Postives = 116/286 (40.56%), Query Frame = 0
Query:  496 CELCGRSFNQRALSVHSRVCQKVFISTRPRFDSRQRRTQGTEAEKYVKQQLMRPLVNRRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRTDIATLAATRRPLPQKQVKRQYITGTTFSSLPSVSLDSTAAAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQGMLLGARHRVVKESWGGRVVGGRF 782
            C  CGR F   AL  HSR C KVF + R  FD+ + R +GTE EK+ K++                                                  XXXXXXXXXXXXXXXXXXXX  D T +   AA                                          KW QQS+ FR  L+  R VA A+K G+        +L+            SL+PCPHC R+++E A  RH+  CK+IRAKPS L KG G LLG   R       G+  G R+
Sbjct:  872 CRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKEK--------------------------------------------------XXXXXXXXXXXXXXXXXXXXGFDDTPVGGAAA------------------------------------RGARSSKWRQQSKQFRDALRQARVVADAQKSGK--------SLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIRAKPSVLKKGSGSLLGQAARKTASGASGKGRGQRW 1063          
BLAST of NO12G03490 vs. NCBI_GenBank
Match: XP_003063413.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH52549.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 66.6 bits (161), Expect = 3.900e-7
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0
Query:  721 LVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQGMLLGARHR 767
            L  CPHCLRK+NE AAARHIP+C++I+AKP+RL KG G   GA HR
Sbjct:  712 LEQCPHCLRKFNETAAARHIPQCRNIQAKPTRLQKGGGR--GAHHR 755          
BLAST of NO12G03490 vs. NCBI_GenBank
Match: GAX79868.1 (hypothetical protein CEUSTIGMA_g7308.t1 [Chlamydomonas eustigma])

HSP 1 Score: 66.2 bits (160), Expect = 5.100e-7
Identity = 72/283 (25.44%), Postives = 93/283 (32.86%), Query Frame = 0
Query:  489 PTTHVYPCELCGRSFNQRALSVHSRVCQKVFISTRPRFDSRQRRTQGTEAEKYVK-------QQLMRPLVNRRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRTDIATLAATRRPLPQKQVKRQYITGTTFSSLPSVSLDSTAAAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQGMLLGAR 765
            P+  +  C+ CGRSFNQ+A   H++VC KVF   R  F+    R  GTEA K+V        +Q  RP    R G                                                               TD                                     A +  AA    KW QQS   RA ++ANR + +A+ +G  +              A+  +    VPCP+C RK+    A RHIPKCKD  AKPS    G G    AR
Sbjct:  464 PSGLLIECQSCGRSFNQQAYPKHAKVCAKVFCQKRKVFNMTAARVAGTEAAKFVMGAGGNKGRQPARPGSGARGG---------------------------------------------------------------TDA----------------------------------RVAQSAAAASKKAKWKQQSDQLRAAMQANRMMKEAQAKGMDI--------KDIPFQAANPEDDDRVPCPYCGRKFAPLTADRHIPKCKDTIAKPSFQKAGAGKGAHAR 641          
BLAST of NO12G03490 vs. NCBI_GenBank
Match: PNW83851.1 (hypothetical protein CHLRE_04g217952v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 65.5 bits (158), Expect = 8.700e-7
Identity = 66/283 (23.32%), Postives = 91/283 (32.16%), Query Frame = 0
Query:  479 TFSTGEEVERPTTHVYPCELCGRSFNQRALSVHSRVCQKVFISTRPRFDSRQRRTQGTEAEKYVKQQLMRPLVNRRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRTDIATLAATR---RPLPQKQVKRQYITGTTFSSLPSVSLDSTAAAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQG 759
            T   G +   PT  +  C  CGR FN++A S H+++C+KVF   R   +   +R +G+EA K+   +   P    +                                                                         TR   RPLP              S +P                  KW  QS+  R  + AN+R+A A   G  +         +        +    VPCPHC RK+ E  A RHIPKC+DI AKP  L    G
Sbjct:  375 TIPPGADDPGPTGPMVECPSCGRRFNEQAYSKHAKICEKVFAQKRKPVNMAAKRLEGSEAAKFFDMRKGVPKSEAK-----------------------------------------------------GAAGPPGKAAPGRGAGAAGGTRLDDRPLPG-------------SKMP------------------KWKAQSEQLRQAMAANKRIADAAARGVDIKDVKFTPTPA--------EQDDRVPCPHCGRKFAELTAERHIPKCRDILAKPKFLGAKSG 565          
The following BLAST results are available for this feature:
BLAST of NO12G03490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
XP_005853796.12.300e-3942.90low-co2-inducible protein, partial [Nannochloropsi... [more]
GBG31944.15.700e-1426.13Zinc finger C2HC domain-containing protein CBG1462... [more]
XP_009038970.11.500e-1143.81hypothetical protein AURANDRAFT_65724 [Aureococcus... [more]
CBN78272.17.600e-1132.87Zinc finger, C2H2 type family protein [Ectocarpus ... [more]
XP_003063413.13.900e-767.39predicted protein [Micromonas pusilla CCMP1545] >E... [more]
GAX79868.15.100e-725.44hypothetical protein CEUSTIGMA_g7308.t1 [Chlamydom... [more]
PNW83851.18.700e-723.32hypothetical protein CHLRE_04g217952v5 [Chlamydomo... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010313NSK010313Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03490.1NO12G03490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592833gene_5524Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03490.1NO12G03490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03490 ID=NO12G03490|Name=NO12G03490|organism=Nannochloropsis oceanica|type=gene|length=3287bp
TGGAGTCCCGGTCCCGGGACGGATACGGGGGAGGGGGGAAGAGAGTTTTG
ATAGCGATTTAGATGTGGGCTCGCTACATATAACACCATCACGCTTCTGG
TGACTTTGTTTAGCAAGGAAAGCCACCCAGTCACCGCCCTGGTTGGCGAG
GACGCATGCCCCGTCAGTCGGCCTAACACATGTAGCTTCAAGGCATCTCG
GTCAGTTATTTGGAGGCCTGCCTTGGGTGTTTGTGGTGCCACCGGTTATC
TCCGCCATATGTCCGTTTGCTGGCTGCAACCTGGGAACAAAGCAAGTTGG
CCTCGCTCCGTTTCCACTAGGCAATGTACCCACGCTTTGTATTGATACCT
CGACGCCTTGTTCATGCTATGACAGGACTGGGCTAGAGTGGGAAGACGAC
GTTGTTACTTTCTCCGCCTCCAAACCAATTTTCACATCTAGATTGCTCCT
GGGGCGAAAATCTCGCGAGTCGATAAGCAAAAACGCAGGACTGTCGACGA
CTCATGCCACCAAAGGTTTTGTTCCTGGACCCCCGGCAATGGGCAGCTAA
GCGACAAGAAGCTATTGAGAAGGCCAACAAgtacgtgggagtcgagaggg
tgggtggaagtcatctggccctgtcatcgtaatacgccagactgtcagtg
accctagggccccaaaaaggcttgggctgagtttggaggtccggggcata
aattcagcgagctgtctctctatcctcgtgtatctgtacttaatatcaat
acgtttttgttccaggagcgtgacagagagaggccacgcattactcaccc
aacgccctcctcttttcccctgcccactcatccagATTGCGAGCCAACCG
CGCGGTAGGGGGCATACTCGACGAGTCGTACACCTTTGCGCCCAAGACAA
ATTTGCACAGGAAAAATGCCAGTGGTGACAGCCATACCAATCGACAGCTC
TCTATTGATGTCACCCAGTCACCCGGTGCGAACCTGTACTTTGCCGTCCC
TTCAACCTCATCAACGACCCTCCTGAGGTCGTCCTCTTCCATGGCCACAG
CCCGTCGCAGCATCAGCAGCATGCGCTGCAGCCGAAGCAGCAGTAACAGC
AGCAGTGGGACTGGCGCTGATCATCATCGAGGGAGAAATGACAGCATGAG
CACCAGTGATGGTCGTGGGGGTGGTGGACGGAGTGCAAGGGGAGCAGCTA
CGGCAGCACCAGCACCAGCAAAGGCGCCTGGAACTTTCTTGCCGTCCCTG
CGGACCACCAAGCTCCAGCCGACATATACTCACACTAGCGGCAACAAGAG
CAGCAGCACCAGCAGTGCCAGCGACGTCAGTACCAAGCAGCATCAGCTCG
CCTCCTCTCTTTCCTGGAGCCCAAATAACTATGAGGAAGACCAACATTCC
CTTGCTCCCCTCTCCAACCCTCTTCCCGTCTCATCAAGCGATGCGATGGT
AGGCGCGGGTCCAACTGGGGGACTGTCGAGAAAAAAGCAGCAGCAGCAAC
ATCAACAGCAGCAATATCAACAGGCCTCTTCCCACGCTGTTGTTGTTGCT
GATGATGCTGCCATCTCGGCAGCTACTATTTGTACTTCCACCTCCGCGTT
TGCAGCGGTAGGGATGAGACAAGGGAGACTGGCACGCCAAGGTGGAAAAT
ATAGTACCCCGATGAAAGGGGAGCAGGAGCTCAGTAGTAGGCGGGTGCCA
ACTGGGGCGGGAGGGTTGGACAAACACTACCACAATTATCACAAAGGGAA
TGAAAGACGGGAGAAGGAGACAGAAAAGCATTTTCGTATCACGGAAGAGG
ATGGTGATTGTGTTTTTAAACGAAAATCTGCCACAACGTCCGCCTCCCTT
TCCCTCCTCAAGGCCAAGCTGCTGCAGAAGAAGTCGTCTTCCTCCTCCTC
CCCCTCCTCCTCCCCCTCCTCCTCCCCCTCCCGGCCAATCCACTCTTTGC
CTCCTTCTTATTTCTCATCCTCATCGCCATCCTTCAATGCCACGTGCTGG
TACAGTAAGGGTGATGTGGAAGCGGAGGAGAAAGCGGAAAGGGAGCAAAA
GCTGAAGGAGAAGAAGGAGGACGAGGACGAAGACTACTTCGACGCCCTCT
CTCCCTCCAGCACCAGTAGCTCCCCCCATGAGGACAATCCGCGCCCGAAG
CAGCACCAGCATTGGCAGCAAGAGCACCAGGACAATGACACCACCTTTTC
GACTGGAGAAGAAGTTGAGCGCCCTACGACTCACGTCTATCCTTGCGAAT
TGTGTGGGCGCAGCTTCAATCAACGCGCCCTCTCGGTGCACTCTCGTGTG
TGTCAGAAAGTATTCATTTCGACCCGTCCTAGGTTTGACTCGCGACAGCG
ACGGACTCAAGGAACGGAAGCAGAAAAATATGTGAAGCAGCAGCTGATGC
GCCCTCTTGTGAACAGACGGTTGGGAGGAGTGGGAGGAGGGACGGGTAGT
GCTGCTGCTGTGAGTGGTAGCACGGAAAATCAAAGAATGATGAAAAAAAG
GACGGCAGCCTCCGCAGGGACAGCCTGGTCACAGTCACAAGCTGCATCTG
TCGCTTGTCTGGCGCGTTGTCGCCAGAGAGAGGAGCAGCAGCAGGAGAAG
AAAGAGGTGGATCGGACGGACATAGCCACACTCGCAGCCACGCGCAGACC
ACTGCCGCAGAAACAGGTCAAAAGACAATATATCACGGGCACCACATTTT
CATCCCTCCCCTCCGTTTCCCTCGACTCCACTGCTGCCGCCATCCCTGCC
GCCGAAGATGGCAAGAAATGGCTCCAGCAATCCCAAGGCTTCCGGGCCAT
GCTCAAGGCAAACCGTCGCGTCGCGCAAGCCGAGAAGGAGGGCCGTCCAG
TTAGCCCCACTCTCCTTGCAGCTCTCTCATCATCCGCCGCTGCTGCATCT
GGGATGCAGTCACAGAGCTTGGTCCCTTGCCCGCATTGCCTACGAAAATA
CAATGAGCAGGCTGCCGCACGACATATCCCCAAGTGCAAAGACATCAGGG
CCAAGCCTAGTCGGTTACACAAGGGACAAGGAATGCTGTTGGGAGCCCGG
CATCGTGTGGTCAAGGAGAGTTGGGGGGGAAGGGTGGTCGGTGGAAGGTT
TGATGCAGGGGGAGGTTCTGCGGAAACGCGGGGAGGCAGAGGTGGGCGAC
GAGGATGACTTTGAAGTAGACATGTAAGAAGCTAAAGAAGTAAGTAAAGT
GTGTATATTTGTCATGTGCGTGCATGCTTGTTCTGTTTTCCTTTTTTCGT
TTTGTCCAGTGTCAAGAGATGGAGGAGAGGCAGGAGG
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protein sequence of NO12G03490.1

>NO12G03490.1-protein ID=NO12G03490.1-protein|Name=NO12G03490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=800bp
MPPKVLFLDPRQWAAKRQEAIEKANKLRANRAVGGILDESYTFAPKTNLH
RKNASGDSHTNRQLSIDVTQSPGANLYFAVPSTSSTTLLRSSSSMATARR
SISSMRCSRSSSNSSSGTGADHHRGRNDSMSTSDGRGGGGRSARGAATAA
PAPAKAPGTFLPSLRTTKLQPTYTHTSGNKSSSTSSASDVSTKQHQLASS
LSWSPNNYEEDQHSLAPLSNPLPVSSSDAMVGAGPTGGLSRKKQQQQHQQ
QQYQQASSHAVVVADDAAISAATICTSTSAFAAVGMRQGRLARQGGKYST
PMKGEQELSSRRVPTGAGGLDKHYHNYHKGNERREKETEKHFRITEEDGD
CVFKRKSATTSASLSLLKAKLLQKKSSSSSSPSSSPSSSPSRPIHSLPPS
YFSSSSPSFNATCWYSKGDVEAEEKAEREQKLKEKKEDEDEDYFDALSPS
STSSSPHEDNPRPKQHQHWQQEHQDNDTTFSTGEEVERPTTHVYPCELCG
RSFNQRALSVHSRVCQKVFISTRPRFDSRQRRTQGTEAEKYVKQQLMRPL
VNRRLGGVGGGTGSAAAVSGSTENQRMMKKRTAASAGTAWSQSQAASVAC
LARCRQREEQQQEKKEVDRTDIATLAATRRPLPQKQVKRQYITGTTFSSL
PSVSLDSTAAAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSP
TLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKP
SRLHKGQGMLLGARHRVVKESWGGRVVGGRFDAGGGSAETRGGRGGRRG*
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Synonyms
Publications