NO12G03350, NO12G03350 (gene) Nannochloropsis oceanica

Overview
NameNO12G03350
Unique NameNO12G03350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2140
Alignment locationchr12:919212..921351 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:919212..921351 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G03350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010293NSK010293Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03350.1NO12G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03350.1NO12G03350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03350 ID=NO12G03350|Name=NO12G03350|organism=Nannochloropsis oceanica|type=gene|length=2140bp
AACAGGAATGGCTACCGCCTGGCGGCCATCCTCCGACCCCTTGAATCGGT
ACCTTGATTTCATGGCCATGTCGGAGCCATCAGAAGCAGAGGAAGGCGAG
GGCGGGAACCCTGATTTGCACGAGATGCGAGCCCTTTCCGAGGAAGTAGA
AGACGAGTCCCAGCCTTCACGACCAATACCTCATGAAAACGACGATTGGT
GGCCTCCACTGTGTGGCCGTCTGGCGCGGCAAGGTATCCTGATAAGCTCT
CGTCGAGTTTCCACCGTCCATGCTCCACGATCGCCACAACCACCACCGGC
CTTCCTCGCCCTCGTCCAAGACCTCGAATGTTTCCACGCCCACATTCGAT
CCATTTTCCGCCTCTTGCGCGGTTCCTTGGCCCTACATTGTGGTCGAGGC
ATTTCCGTTCCAATGATACCTTTGTTGGCTCTCCATCACGGTGTGGTCGA
GGAGGAAAAAGCACGCGCGCATGCAGTGGTCATGCCGGCTTTGCGAGCCA
CACTCCTGCAGTCCTTGGGGCGGGCGAGTCAAGCGATTGTGGCTGCGGTA
GCCGGGGGCAGTACGCATGAGCATGATAATAATGAAGGGTGGAGAGATGG
CGAAGAGGTGATTGCCAATATGACATCGCTGCTCAGGCAGGAAGAGCAGC
AGCAGCAGCATTGGGATTCGGCGCCGACGATGACAAGGAAAGGCATAAAT
TTGTTCCACCTCCAGACAGCATTTAAAGCTTGGACCGCCTTGGTGGGTGA
ATCTTTACCACGACTCTTGACTGTCGCTATACGGCGAAGACCAAGCCGGG
AGGACGGGATGCAGGCAGAGGAAGAGGAAGAGGAAGAGGAGTCTTTACGT
TGCCTGAGCCAGGTTTTGCGGGAAGAGGAAGCATGCCTCACAGAGGCCTT
CAGACTACGAAGTCCCTCCCGTTCTCCTCCTCCTCTTCTTTCTCTACTTT
CTCCTTCTTCTTCATCTACTGCTCCTTCTTCTTCTCCTTCTACCTCGCTC
GTCATCACCACGGACCAGCACAATGGAAAGGAAGGACGACATCGACAGTC
TTTCAAAGCGCGCCTGCAGAATATAGCGTATCGTCTTTCTCGCCGGCGCG
CTGCTGCTGAGGCTCGAGTTGCCCATATTTTCCTCCAGCAATGCGCTGTC
ATTGACGTGCTATCACGGATGGAAGATGAGGGAAGGGAGGAGGAAGGGGA
AAAGGAAGGGAAGGAGGAAGGGCTTTTACATGCGGAGTTGGAGAACTTGT
GCAAGGTGCTGACGGAAAGAGGAAGGGAGGAAAGGGAGGAGCTGGGAGGG
CAGCAGACAGAAGTGGAAGTGATGGAAGTGCGCGCAATGCAGCGTGCTTT
GATGAAGAAGGGAGGGAGGGAGGGAGAGTGGGAGGACGGGGCAGGGTGTG
GGTCCGTTCAGGCACTAGATGAGGCATATGTTATTCGCGAGGGAGGATGT
GGAGATGAAGAGGAAGAAGGCAGAGGAGCAGGAGGAGGAAGAGGGGAAAA
TGAAGGCCCAAATGCGTCACGGCAAAAGGAGAAGATGGAATACGTCGCGA
TCGAGAAGGAAGAAAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGAAGAG
GATGATCCTGTCTTGGAAGTCTTTGAGGGAAGAGCCGGATTAGAAGCTCA
CCCAGACGGTAACATACGATATCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCATAAGAGTGAAACAGCAGCAGCAGCAGTGATTGGGCATGACGCGTTG
ATGGGGGAGTTGGGGAGGGTCTTGTTTCATCGACAGCGGCAACAACCGTT
GGCGACGAGGGTGAAAGTGAATGGACGGGTACTGATGGCTTCGTCTTTCT
CGTCTTTGTTGACATTGGAAGAAGAAGAGGCAGGGAGAAATGAGAAAAAA
GGTTACGGGACGAGGAGGGGAAAGAGGAGGACGACGCTACCGCGAGATGA
TGGGGCAGGAGAAGTGTCATGTGGAATGGGCGCGGCGTTGCTGGCCGCGG
TCTTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CGAGAACAGAACATGGAGGTGGATGTATTTGATGGGGAGGGGGAAGTGGA
AGGGGGGGAGTGTAGAAATATAGAAGGTGATAATGTGTAA
back to top

protein sequence of NO12G03350.1

>NO12G03350.1-protein ID=NO12G03350.1-protein|Name=NO12G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp
MATAWRPSSDPLNRYLDFMAMSEPSEAEEGEGGNPDLHEMRALSEEVEDE
SQPSRPIPHENDDWWPPLCGRLARQGILISSRRVSTVHAPRSPQPPPAFL
ALVQDLECFHAHIRSIFRLLRGSLALHCGRGISVPMIPLLALHHGVVEEE
KARAHAVVMPALRATLLQSLGRASQAIVAAVAGGSTHEHDNNEGWRDGEE
VIANMTSLLRQEEQQQQHWDSAPTMTRKGINLFHLQTAFKAWTALVGESL
PRLLTVAIRRRPSREDGMQAEEEEEEEESLRCLSQVLREEEACLTEAFRL
RSPSRSPPPLLSLLSPSSSSTAPSSSPSTSLVITTDQHNGKEGRHRQSFK
ARLQNIAYRLSRRRAAAEARVAHIFLQQCAVIDVLSRMEDEGREEEGEKE
GKEEGLLHAELENLCKVLTERGREEREELGGQQTEVEVMEVRAMQRALMK
KGGREGEWEDGAGCGSVQALDEAYVIREGGCGDEEEEGRGAGGGRGENEG
PNASRQKEKMEYVAIEKEEREGGREGGKEEEDDPVLEVFEGRAGLEAHPD
GNIRYQQQQQQQQQQHKSETAAAAVIGHDALMGELGRVLFHRQRQQPLAT
RVKVNGRVLMASSFSSLLTLEEEEAGRNEKKGYGTRRGKRRTTLPRDDGA
GEVSCGMGAALLAAVLQQQQQQQQQQQQQQQREQNMEVDVFDGEGEVEGG
ECRNIEGDNV*
back to top
Synonyms
Publications