NO12G03230, NO12G03230 (gene) Nannochloropsis oceanica

Overview
NameNO12G03230
Unique NameNO12G03230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2044
Alignment locationchr12:894529..896572 +

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 2 subunit alpha
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:894529..896572 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003743translation initiation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR024055TIF2_asu_C
IPR012340NA-bd_OB-fold
IPR024054TIF2_asu_middle
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR011488TIF_2_asu
IPR022967S1_dom
Homology
BLAST of NO12G03230 vs. NCBI_GenBank
Match: XP_002904099.1 (eukaryotic translation initiation factor 2 subunit alpha [Phytophthora infestans T30-4] >EEY54277.1 eukaryotic translation initiation factor 2 subunit alpha [Phytophthora infestans T30-4])

HSP 1 Score: 339.3 bits (869), Expect = 1.300e-89
Identity = 184/320 (57.50%), Postives = 226/320 (70.62%), Query Frame = 0
Query:   16 ESTRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPLYRK--------------HGHAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAPKPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSS-EVDIKLIAPPMYVVTTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQAMIKRIEEENEEVDGDAPED 321
            E   LQCRFYE+++P  + +VMV V +IAEM A V LLEYN+IEGMIL SELSRRRIRSI KLIRV K EVV VLRVDK+KGYIDLSKRRVSP+D+ KCEERYNKAK VH VLR VA ++ + +EDLY KV WPLY+K              + H +D F   +  +       VF  LDITPE+  ++   I+RRL P+PIKIRADIEVTCF YEGIEAIR+ALQAG +  +    V +KLIAPPMYV+TT+TL+K  GI+ L   IE +R  +T  +G + VKM PKVVS  +E +   MI+++E E+  VDGDAPED
Sbjct:   19 EILHLQCRFYEQRFPEIDELVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRVGKNEVVMVLRVDKEKGYIDLSKRRVSPEDIAKCEERYNKAKTVHGVLRQVAQENHLEIEDLYSKVAWPLYKKFKIETPSEDEKKVEYVHCYDVFKMGITDDA------VFEGLDITPEILTALKAQIRRRLTPQPIKIRADIEVTCFTYEGIEAIRSALQAGQNVGTEDVPVKVKLIAPPMYVMTTSTLDKQKGIQKLQEAIEAVREHITAKKGTMSVKMEPKVVSVNEEKEFLQMIEKLENESRMVDGDAPED 332          
BLAST of NO12G03230 vs. NCBI_GenBank
Match: OWZ21019.1 (Eukaryotic translation initiation factor 2 subunit alpha [Phytophthora megakarya])

HSP 1 Score: 338.6 bits (867), Expect = 2.200e-89
Identity = 184/320 (57.50%), Postives = 225/320 (70.31%), Query Frame = 0
Query:   16 ESTRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPLYRK--------------HGHAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAPKPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSS-EVDIKLIAPPMYVVTTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQAMIKRIEEENEEVDGDAPED 321
            E   LQCRFYE+++P  + +VMV V +IAEM A V LLEYN+IEGMIL SELSRRRIRSI KLIRV K EVV VLRVDK+KGYIDLSKRRVSP+D+ KCEERYNKAK VH VLR VA ++ + +EDLY KV WPLY+K              + H +D F   +  +       VF  LDITPE+  ++   I+RRL P+PIKIRADIEVTCF YEGIEAIR+ALQA  D  +    V +KLIAPPMYV+TT+TL+K  GI+ L   IE +R  +T  +G + VKM PKVVS  +E +   MI+++E E+  VDGDAPED
Sbjct:   19 EILHLQCRFYEQKFPEIDELVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRVGKNEVVMVLRVDKEKGYIDLSKRRVSPEDIAKCEERYNKAKTVHGVLRQVAQENHLEIEDLYSKVAWPLYKKFKIETVSDDEKKVEYVHCYDVFKMGITDDA------VFEGLDITPEILTALKVQIRRRLTPQPIKIRADIEVTCFTYEGIEAIRSALQAAQDIGTEDVPVKVKLIAPPMYVMTTSTLDKQKGIQKLQEAIEAVREHITAKKGTMSVKMEPKVVSVNEEKEFLQMIEKLENESRMVDGDAPED 332          
BLAST of NO12G03230 vs. NCBI_GenBank
Match: XP_024585224.1 (translation initiation factor eif2 alpha subunit [Plasmopara halstedii] >CEG48855.1 translation initiation factor eif2 alpha subunit [Plasmopara halstedii])

HSP 1 Score: 338.2 bits (866), Expect = 2.800e-89
Identity = 182/320 (56.88%), Postives = 226/320 (70.62%), Query Frame = 0
Query:   16 ESTRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPLYRK--------------HGHAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAPKPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSS-EVDIKLIAPPMYVVTTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQAMIKRIEEENEEVDGDAPED 321
            E   LQCRFYE+++P  + +VMV V +IAEM A V LLEYN+IEGMIL SELSRRRIRSI KLIRV K EVV VLRVDK+KGYIDLSKRRVSP+D++KCEERYNKAK VH VLR VA ++ + +EDLY KV WPLY+K              + H +D F   +        + VF  L+ITPE+  ++   I+RRL P+PIKIRADIEVTCF YEGIEAIR+ALQA  +  +    V +KLIAPPMYV+TT+TL+K  GI+ L   IE +R  +T  +G + VKM PKVVS  +E +   MI+++E E+  VDGDAPED
Sbjct:   19 EILHLQCRFYEQKFPEIDELVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRVGKNEVVMVLRVDKEKGYIDLSKRRVSPEDIVKCEERYNKAKTVHGVLRQVAQENNLEIEDLYSKVAWPLYKKFKIETTSEDEKKVEYVHCYDVFKMGITD------DTVFEGLEITPEILTALKAQIRRRLTPQPIKIRADIEVTCFTYEGIEAIRSALQAAQNVSTEDVPVKVKLIAPPMYVMTTSTLDKQKGIQKLQEAIEAVRENITAKKGTMSVKMEPKVVSVNEEREFLQMIEKLENESRMVDGDAPED 332          
BLAST of NO12G03230 vs. NCBI_GenBank
Match: XP_009537236.1 (hypothetical protein PHYSODRAFT_356047 [Phytophthora sojae] >EGZ07670.1 hypothetical protein PHYSODRAFT_356047 [Phytophthora sojae])

HSP 1 Score: 337.4 bits (864), Expect = 4.800e-89
Identity = 184/320 (57.50%), Postives = 225/320 (70.31%), Query Frame = 0
Query:   16 ESTRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPLYRK--------------HGHAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAPKPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSS-EVDIKLIAPPMYVVTTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQAMIKRIEEENEEVDGDAPED 321
            E   LQCRFYE+++P  + +VMV V +IAEM A V LLEYN+IEGMIL SELSRRRIRSI KLIRV K EVV VLRVDK+KGYIDLSKRRVSP+D+ KCEERYNKAK VH VLR VA ++ + +EDLY KV WPLY+K              + H +D F   +        + VF  LDITPE+  ++   I+RRL P+PIKIRADIEVTCF YEGIEAIR+ALQA  +  +    V +KLIAPPMYV+TT+TL+K  GI+ L   IE +R  +T  +G + VKM PKVVS  +E +   MI+++E EN  VDGDAPED
Sbjct:   21 EILHLQCRFYEQKFPEIDELVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRVGKNEVVMVLRVDKEKGYIDLSKRRVSPEDIAKCEERYNKAKTVHGVLRQVAQENHLEIEDLYSKVAWPLYKKFKIETVSDDEKKVEYVHCYDVFKMGITD------DSVFEGLDITPEILAALKAQIRRRLTPQPIKIRADIEVTCFTYEGIEAIRSALQAAQNIGTDDVPVKVKLIAPPMYVMTTSTLDKQKGIQKLQEAIEAVREHITAKKGTMSVKMEPKVVSVNEEKEFLQMIEKLENENRLVDGDAPED 334          
BLAST of NO12G03230 vs. NCBI_GenBank
Match: EJK71536.1 (hypothetical protein THAOC_07014 [Thalassiosira oceanica])

HSP 1 Score: 337.4 bits (864), Expect = 4.800e-89
Identity = 179/308 (58.12%), Postives = 234/308 (75.97%), Query Frame = 0
Query:   16 ESTRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPLYRKHGHAFDAFSKSLLPEG-DERYEDVFADL-DITPELKNSITTYIKRRLAPKPIKIRADIEVTCFAYEGIEAIRAALQAGLD-APSSSEVDIKLIAPPMYVVTTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQAMIKRIEEENEEVDGDAPED 321
            +   L CRFYE +YP  ES+VMV V  +A+M A V LLEYN+IEG+IL SELSRRRIRSI KLIRV + EVV VLRVDKDKGYIDLSKRRVSP+DV  CE+++NKAKAVH VLRH+A++  + LE+LY+++ WPLY+K+GHA+DAF  +L  E   E  ED F  L D+  ++ + +  YI+RRLAP+PIKIRAD+EV+CF Y GI+AIR AL AG+     +S + I+LIAPP+YV++T  LEKD GI  L + I+ I  K++E  G+L+VKMAPK VS ++E +LQAM++R+E EN EV+GD  E+
Sbjct:   65 DKKNLDCRFYEPKYPEIESLVMVNVRTVADMGAYVSLLEYNNIEGLILLSELSRRRIRSINKLIRVGRNEVVMVLRVDKDKGYIDLSKRRVSPEDVAACEDKFNKAKAVHGVLRHLAERRKLVLEELYERIAWPLYKKYGHAYDAFKIALAEESMGEGVEDPFESLKDVPADVIDELKLYIRRRLAPQPIKIRADVEVSCFTYAGIDAIRDALFAGMACGTENSPIRIRLIAPPIYVLSTMALEKDAGIALLQKSIDVILEKISEKGGKLDVKMAPKAVSLKEETELQAMMERLELENREVEGDDDEE 372          
BLAST of NO12G03230 vs. NCBI_GenBank
Match: XP_008900697.1 (hypothetical protein PPTG_08373 [Phytophthora parasitica INRA-310] >ETI53566.1 hypothetical protein F443_03481 [Phytophthora parasitica P1569] >ETK93429.1 hypothetical protein L915_03368 [Phytophthora parasitica] >ETL46848.1 hypothetical protein L916_03353 [Phytophthora parasitica] >ETL99977.1 hypothetical protein L917_03244 [Phytophthora parasitica] >ETM53141.1 hypothetical protein L914_03345 [Phytophthora parasitica] >ETN13616.1 hypothetical protein PPTG_08373 [Phytophthora parasitica INRA-310] >ETO82257.1 hypothetical protein F444_03584 [Phytophthora parasitica P1976] >ETP23373.1 hypothetical protein F441_03509 [Phytophthora parasitica CJ01A1] >ETP51361.1 hypothetical protein F442_03462 [Phytophthora parasitica P10297] >KUF76395.1 Eukaryotic translation initiation factor 2 subunit alpha [Phytophthora nicotianae] >KUF86327.1 Eukaryotic translation initiation factor 2 subunit alpha [Phytophthora nicotianae])

HSP 1 Score: 337.0 bits (863), Expect = 6.300e-89
Identity = 183/320 (57.19%), Postives = 225/320 (70.31%), Query Frame = 0
Query:   16 ESTRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPLYRK--------------HGHAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAPKPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSS-EVDIKLIAPPMYVVTTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQAMIKRIEEENEEVDGDAPED 321
            E   LQCRFYE+++P  + +VMV V +IAEM A V LLEYN+IEGMIL SELSRRRIRSI KLIRV K EVV VLRVDK+KGYIDLSKRRVSP+D+ KCEERYNKAK VH VLR VA ++ + +EDLY KV WPLY+K              + H +D F   +        + VF  LDITPE+  ++   I+RRL P+PIKIRADIEVTCF YEGIEAIR+ALQA  +  +    V +KLIAPPMYV+TT+TL+K  GI+ L   IE +R  +T  +G + VKM PKVVS  +E +   MI+++E E+  VDGDAPED
Sbjct:   19 EILHLQCRFYEQKFPEIDELVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRVGKNEVVMVLRVDKEKGYIDLSKRRVSPEDIAKCEERYNKAKTVHGVLRQVAQENHLEIEDLYSKVAWPLYKKFKIETPSDDEKKVEYVHCYDVFKMGITD------DSVFEGLDITPEILTALKAQIRRRLTPQPIKIRADIEVTCFTYEGIEAIRSALQAAQNVGTEDVPVKVKLIAPPMYVMTTSTLDKQKGIQKLQEAIEAVREHITAKKGTMSVKMEPKVVSVNEEKEFLQMIEKLENESRMVDGDAPED 332          
BLAST of NO12G03230 vs. NCBI_GenBank
Match: ORY01862.1 (eukaryotic translation initiation factor 2 subunit alpha [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 333.2 bits (853), Expect = 9.100e-88
Identity = 171/302 (56.62%), Postives = 234/302 (77.48%), Query Frame = 0
Query:   17 STRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPLYRKHGHAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAPKPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSSEV--DIKLIAPPMYVVTTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQAMIKRIEEENEEVDGD 317
            S++ QCR YE +YP  + +VMV V  IA+M A V L+EY++IEGMIL SELSRRRIRSI+KLIRV + EVV V+RVD++KGYIDLSKRRVSP+++ KCEE++NK+KAVHS++RHVA++  + LE++Y++ GWPLY+K+GHA+DAF  ++        E VF  ++I P++K  +   IKRRL P+PIK+RADIEVTCF YEGI+AI+AAL+AG +A S+ EV   IKL+APP+YV+ TNTL+K+ GIE L++ I  I   V ++ G + +KM PK VS+ DEA+L A++ R+E+EN EV GD
Sbjct:    3 SSQFQCRMYEARYPEVDDLVMVNVRQIADMGAYVKLMEYDNIEGMILLSELSRRRIRSIQKLIRVGRNEVVVVMRVDREKGYIDLSKRRVSPEEIAKCEEKFNKSKAVHSIMRHVAEKQNLVLEEIYQQFGWPLYKKYGHAYDAFKLAITEP-----ETVFEGIEIEPQVKEELLNNIKRRLTPQPIKVRADIEVTCFGYEGIDAIKAALKAG-EALSTEEVGIKIKLVAPPLYVMITNTLDKNAGIEMLDKAIAVIEDIVGKNGGNVNIKMKPKAVSESDEAELAALMARVEKENAEVSGD 298          
BLAST of NO12G03230 vs. NCBI_GenBank
Match: GBC25249.1 (Translation initiation factor 2 subunit 1 [Rhizophagus irregularis DAOM 181602] >PKC09480.1 hypothetical protein RhiirA5_356635 [Rhizophagus irregularis])

HSP 1 Score: 332.4 bits (851), Expect = 1.500e-87
Identity = 172/297 (57.91%), Postives = 227/297 (76.43%), Query Frame = 0
Query:   25 YEEQYPNPESMVMVKVMNIAEMAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPLYRKHGHAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAPKPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSS-EVDIKLIAPPMYVVTTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQAMIKRIEEENEEVDGDAPED 321
            YEE++P  E +VMV V  IAEM A V LLEY++IEGMIL SELSRRRIRSI+KLIRV + EVV VLRVDKDKGYIDLSKRRVSP+DV K EE++NK+KAVHS++RHVA++  + LEDLY+K+GWPLY+K+GHA++AF  ++        E VF  L+ITPE+   +   IKRRL P+PIKIRADIEVTCF Y+GI+AI++AL+AG    +   ++ +KL+APP+YV+ TN L+K++GIE L + IE +R  + +S G L VKM P+ VS+ D+ +L A++ R+E+EN EV GD   D
Sbjct:    2 YEERFPEKEDLVMVNVRQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGRNEVVVVLRVDKDKGYIDLSKRRVSPEDVAKAEEKFNKSKAVHSIMRHVAEKQNLVLEDLYQKIGWPLYKKYGHAYEAFKLAITEP-----EKVFEGLEITPEISEELLNNIKRRLTPQPIKIRADIEVTCFGYDGIDAIKSALKAGEACETGDIQIKVKLVAPPLYVMITNALDKNMGIELLGKAIETVRDGIEKSGGTLTVKMKPRAVSETDDLELAALMARVEKENAEVSGDEDTD 293          
BLAST of NO12G03230 vs. NCBI_GenBank
Match: CCI41059.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 331.6 bits (849), Expect = 2.600e-87
Identity = 176/321 (54.83%), Postives = 228/321 (71.03%), Query Frame = 0
Query:   15 DESTRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPLYRKHG--------------HAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAPKPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSS-EVDIKLIAPPMYVVTTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQAMIKRIEEENEEVDGDAPED 321
            DE   LQCRFYE++YP  + +VMV V +IAEM A V LLEY++IEGMIL SELSRRRIRSI KLIRV K EVV VLRVDK+KGYIDLSKRRVSP+D+ KCEERYNKAK VH VLR +A    + +E+LY+K+ WPLY+K+               H +D F K +        + VF  LD+T E++ S+ ++I+RRL P+PIK RAD+EVTCF YEGIEAIR+AL+AG D  +    + +KLIAPPMYV+TT+TL+K  GI+ L+  I+ +R  +   +G L VKM PK+VS  +E +   MI+++E EN +VDGDA E+
Sbjct:   26 DEFIHLQCRFYEQKYPEVDELVMVNVRSIAEMGAYVSLLEYDNIEGMILLSELSRRRIRSINKLIRVGKNEVVMVLRVDKEKGYIDLSKRRVSPEDIFKCEERYNKAKTVHGVLRQLAVDTSLGIEELYEKIAWPLYKKYKIESQNEDEKKTEYLHCYDVFKKGVSD------DSVFEGLDMTSEMRTSLKSHIRRRLTPQPIKFRADVEVTCFTYEGIEAIRSALKAGQDVGTEDVPIKVKLIAPPMYVITTSTLDKQKGIQQLHVAIDAVREHIQSRKGSLTVKMEPKIVSANEEKEFLQMIEKLEIENRQVDGDAAEE 340          
BLAST of NO12G03230 vs. NCBI_GenBank
Match: CCA14406.1 (eukaryotic translation initiation factor 2 subunit alpha putative [Albugo laibachii Nc14])

HSP 1 Score: 330.1 bits (845), Expect = 7.700e-87
Identity = 177/321 (55.14%), Postives = 227/321 (70.72%), Query Frame = 0
Query:   15 DESTRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPLYRK--------------HGHAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAPKPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSS-EVDIKLIAPPMYVVTTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQAMIKRIEEENEEVDGDAPED 321
            DE   LQCRFYE++YP  + +VMV V +IAEM A V LLEYN+IEGMIL SELSRRRIRSI KLIRV K EVV VLRVDK+KGYIDLSKRRVSP+D+ KCEERYNKAK VH VLR +A    + +E+LY+K+ WPLY+K              + H +D F K +        + VF  LDIT E++ S+ ++I+RRL P+PIK R D+EVTCF YEGIEAIRAAL+AG +  +    + +KLIAPPMYV+TT+TL+K  GI+ L+  I+ +R  +   +G L VKM PK+VS  +E +   MI+++E EN +VDGDA E+
Sbjct:   26 DEFIHLQCRFYEQKYPEVDELVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRVGKNEVVMVLRVDKEKGYIDLSKRRVSPEDIFKCEERYNKAKTVHGVLRQLAVDTSLGIEELYEKIAWPLYKKFKIESQNEDEKKTEYLHCYDVFKKGVSD------DSVFEGLDITIEMRISLKSHIRRRLTPQPIKFRTDVEVTCFTYEGIEAIRAALKAGQEVGTEDVPIKVKLIAPPMYVITTSTLDKQKGIQQLHVAIDAVRDHIQSRKGSLSVKMEPKIVSANEEKEFLQMIEKLEIENRQVDGDAAEE 340          
The following BLAST results are available for this feature:
BLAST of NO12G03230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002904099.11.300e-8957.50eukaryotic translation initiation factor 2 subunit... [more]
OWZ21019.12.200e-8957.50Eukaryotic translation initiation factor 2 subunit... [more]
XP_024585224.12.800e-8956.88translation initiation factor eif2 alpha subunit [... [more]
XP_009537236.14.800e-8957.50hypothetical protein PHYSODRAFT_356047 [Phytophtho... [more]
EJK71536.14.800e-8958.12hypothetical protein THAOC_07014 [Thalassiosira oc... [more]
XP_008900697.16.300e-8957.19hypothetical protein PPTG_08373 [Phytophthora para... [more]
ORY01862.19.100e-8856.62eukaryotic translation initiation factor 2 subunit... [more]
GBC25249.11.500e-8757.91Translation initiation factor 2 subunit 1 [Rhizoph... [more]
CCI41059.12.600e-8754.83unnamed protein product [Albugo candida][more]
CCA14406.17.700e-8755.14eukaryotic translation initiation factor 2 subunit... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL129nonsL129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR010ngnoR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010262NSK010262Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03230.1NO12G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592736gene_5499Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100087g4gene4787Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03230.1NO12G03230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03230 ID=NO12G03230|Name=NO12G03230|organism=Nannochloropsis oceanica|type=gene|length=2044bp
GGCCGTTCATCATGCCTGCTTCTTTCCGGCATAGCGGTGTGCCTATGTCA
CCAGCTTATTTACCTTGAGTCTCACCTATGCTCATCGAGGTGAACATGCC
AGCCAGTATCCTCTCTATACGTGCTCCGCGGTCCTGCTCTCTGTCAACCT
CTCGCAATTCCCACCCACCCCTGTGCCATACCACAGTCAAGGAGCAGCGC
AACACCACTTCTTCCTACACGTCCATCAATAGAAGCGTCACTCATGgtac
attcttctcccacctttctcccctccccccaaaccaatgtctcctattct
tctattcctattgctttcatccctctattcctaacattctgcccccttgc
ttcaccataaccatcatcataataagGCGACGGAGGGCGATGAAGGCCTC
CCACCTATCGCACGGGACGAGTCCACTCGCCTGCAATGCCGGTTTTACGA
AGAGCAGTACCCTAACCCAGAGAGCATGGTGATGGTGAAAGTCATGAACA
TCGCTGAGATGGCGGCGGAAGTGATCCTGCTTGAGTACAACGACATTGAG
gtgagggctcccggggggagagagggaaggaggggagggatgtgaaacag
gcggcacgcaagagagaaaagaatttgaactcttcgtcgttgggtgtata
agagtaggctgttcgccctctgggcctttcttctcacacggcccctctct
cccaccttcccccttactttataacagGGCATGATCCTGCACTCTGAGCT
GTCCCGACGCCGCATCCGTTCCATCAAAAAGCTGATCCGTGTGAACAAGC
TGGAGGTGGTGTCGGTACTGCGGGTGGACAAAGATAAAGgtaaatttctg
cgtgtacattgttgtgcctctacctacctctattgaacaaccatacgagc
agcgagcagtgagcgcaaccccttcacctatgctgatccttccctccctc
ccttcctcttccctcgccagGCTACATCGATCTCTCCAAGCGCCGGGTTT
CCCCCGATGACGTTATTAAATGCGAAGAACGTTACAACAAAGCTAAGGCG
GTGCACTCCGTCCTTCGCCACGTGGCCGACCAACACGGCATCTGGCTCGA
GGATCTGTACAAGAAGGTGGGCTGGCCCCTCTACCGCAAGCATGGACACG
CCTTCGATGCTTTCTCCAAGgtacgtgcctatgtccttttcgtctttcct
cccgttcttcctttaatctgttcagcggatatggaagagctgtctcagca
ctcattaacacctccctccctccctccctccctccctccctcctccttac
ccccccagTCACTCCTTCCCGAAGGCGACGAGCGGTACGAAGACGTGTTT
GCTGACCTTGATATCACCCCTGAGCTGAAAAACAGCATTACTACGTACAT
TAAACGTCGCCTCGCGCCCAAGCCAATCAAAATCCGTGCTGATATTGAAG
TGACGTGCTTTGCTTACGAGGGGATTGAAGCCATCCGTGCGGCGTTGCAG
GCGGGCTTGGACGCCCCTTCTTCGAGCGAGGTGGATATAAAACTAATTGC
GCCACCAATgtaagcgtcggggagggaaggagaaggcctttctgtctatt
ttgtcttgtctctttcgttttgtctgccttctgtctgtctgtccttaact
ccttctgcctatattgctcacttaccctccctctctcattacctcttcta
ctactagGTATGTCGTCACTACCAACACGCTAGAGAAGGATGTGGGCATC
GAGAACCTGAACCGAGTGATTGAGAAAATCCGAGCGAAGGTTACCGAAAG
TGAGGGGAGGTTAGAAGTCAAGATGGCACCCAAGGTGGTAAGCCAGCGGG
ACGAGGCGGACTTGCAGGCCATGATCAAGAGGATTGAAGAAGAGAATGAG
GAGGTGGATGGTGATGCCCCGGAGGATGCATAAAGAGAGAAAGGGGAGAA
AGAAAGGAGGGACGGAGGGAGGAGGTGGGGAGGTTGGTCCAGAGCGGAAG
GAACAGGCGAGACATATGCCAGCAGAGGGCGCAAAATAAAAATT
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protein sequence of NO12G03230.1

>NO12G03230.1-protein ID=NO12G03230.1-protein|Name=NO12G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MATEGDEGLPPIARDESTRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEV
ILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYID
LSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPL
YRKHGHAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAP
KPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSSEVDIKLIAPPMYVV
TTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQ
AMIKRIEEENEEVDGDAPEDA*
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Synonyms
Publications