NO12G03230.1, NO12G03230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03230.1
Unique NameNO12G03230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1320
Alignment locationchr12:894529..896572 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:894529..896572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03230.1 vs.
Match: EWM25744.1 (eukaryotic translation initiation factor 2 subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 553.5 bits (1425), Expect = 4.300e-154
Identity = 282/321 (87.85%), Postives = 305/321 (95.02%), Query Frame = 0 
Query:    1 MATEGDEGLPPIARDESTRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPLYRKHGHAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAPKPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSSEVDIKLIAPPMYVVTTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQAMIKRIEEENEEVDGDAPEDA 322
            MA++G+E    +ARDESTRLQCRFYEEQYPNPESMVMVKV+NIA+MAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDK KGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVAD H +WLEDL KKV WPLYRKHGHAFDAF+KSLLPEGD+RYEDVFA LDI+PE+K+SI TYIKRRLAPKPIKIRADI+VTCFAYEGIEA+RAALQAGL+ P SSEV+IKLIAPPMYVVTTNTLE+D+GIENLN+VIE+IRA++  SEGRLE+KM PKVVSQRDEADLQAMIKRIEEENEEVDGDAPEDA
Sbjct:   53 MASDGEESTQ-MARDESTRLQCRFYEEQYPNPESMVMVKVINIADMAAEVILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKKKGYIDLSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADMHHLWLEDLCKKVAWPLYRKHGHAFDAFTKSLLPEGDDRYEDVFAGLDISPEVKHSIVTYIKRRLAPKPIKIRADIDVTCFAYEGIEAVRAALQAGLETPCSSEVEIKLIAPPMYVVTTNTLEQDIGIENLNQVIERIRARIVASEGRLEIKMEPKVVSQRDEADLQAMIKRIEEENEEVDGDAPEDA 372
The following BLAST results are available for this feature:
BLAST of NO12G03230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25744.14.300e-15487.85eukaryotic translation initiation factor 2 subunit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03230NO12G03230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03230.1NO12G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03230.1.cds1NO12G03230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03230.1.cds2NO12G03230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03230.1.cds3NO12G03230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03230.1.cds4NO12G03230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03230.1.cds5NO12G03230.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03230.1.cds6NO12G03230.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03230.1 ID=NO12G03230.1|Name=NO12G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
GGCCGTTCATCATGCCTGCTTCTTTCCGGCATAGCGGTGTGCCTATGTCA
CCAGCTTATTTACCTTGAGTCTCACCTATGCTCATCGAGGTGAACATGCC
AGCCAGTATCCTCTCTATACGTGCTCCGCGGTCCTGCTCTCTGTCAACCT
CTCGCAATTCCCACCCACCCCTGTGCCATACCACAGTCAAGGAGCAGCGC
AACACCACTTCTTCCTACACGTCCATCAATAGAAGCGTCACTCATGGCGA
CGGAGGGCGATGAAGGCCTCCCACCTATCGCACGGGACGAGTCCACTCGC
CTGCAATGCCGGTTTTACGAAGAGCAGTACCCTAACCCAGAGAGCATGGT
GATGGTGAAAGTCATGAACATCGCTGAGATGGCGGCGGAAGTGATCCTGC
TTGAGTACAACGACATTGAGGGCATGATCCTGCACTCTGAGCTGTCCCGA
CGCCGCATCCGTTCCATCAAAAAGCTGATCCGTGTGAACAAGCTGGAGGT
GGTGTCGGTACTGCGGGTGGACAAAGATAAAGGCTACATCGATCTCTCCA
AGCGCCGGGTTTCCCCCGATGACGTTATTAAATGCGAAGAACGTTACAAC
AAAGCTAAGGCGGTGCACTCCGTCCTTCGCCACGTGGCCGACCAACACGG
CATCTGGCTCGAGGATCTGTACAAGAAGGTGGGCTGGCCCCTCTACCGCA
AGCATGGACACGCCTTCGATGCTTTCTCCAAGTCACTCCTTCCCGAAGGC
GACGAGCGGTACGAAGACGTGTTTGCTGACCTTGATATCACCCCTGAGCT
GAAAAACAGCATTACTACGTACATTAAACGTCGCCTCGCGCCCAAGCCAA
TCAAAATCCGTGCTGATATTGAAGTGACGTGCTTTGCTTACGAGGGGATT
GAAGCCATCCGTGCGGCGTTGCAGGCGGGCTTGGACGCCCCTTCTTCGAG
CGAGGTGGATATAAAACTAATTGCGCCACCAATGTATGTCGTCACTACCA
ACACGCTAGAGAAGGATGTGGGCATCGAGAACCTGAACCGAGTGATTGAG
AAAATCCGAGCGAAGGTTACCGAAAGTGAGGGGAGGTTAGAAGTCAAGAT
GGCACCCAAGGTGGTAAGCCAGCGGGACGAGGCGGACTTGCAGGCCATGA
TCAAGAGGATTGAAGAAGAGAATGAGGAGGTGGATGGTGATGCCCCGGAG
GATGCATAAAGAGAGAAAGGGGAGAAAGAAAGGAGGGACGGAGGGAGGAG
GTGGGGAGGTTGGTCCAGAGCGGAAGGAACAGGCGAGACATATGCCAGCA
GAGGGCGCAAAATAAAAATT
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protein sequence of NO12G03230.1

>NO12G03230.1-protein ID=NO12G03230.1-protein|Name=NO12G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MATEGDEGLPPIARDESTRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEV
ILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYID
LSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPL
YRKHGHAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAP
KPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSSEVDIKLIAPPMYVV
TTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQ
AMIKRIEEENEEVDGDAPEDA*
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mRNA from alignment at chr12:894529..896572+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03230.1 ID=NO12G03230.1|Name=NO12G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2044bp|location=Sequence derived from alignment at chr12:894529..896572+ (Nannochloropsis oceanica)
GGCCGTTCATCATGCCTGCTTCTTTCCGGCATAGCGGTGTGCCTATGTCA
CCAGCTTATTTACCTTGAGTCTCACCTATGCTCATCGAGGTGAACATGCC
AGCCAGTATCCTCTCTATACGTGCTCCGCGGTCCTGCTCTCTGTCAACCT
CTCGCAATTCCCACCCACCCCTGTGCCATACCACAGTCAAGGAGCAGCGC
AACACCACTTCTTCCTACACGTCCATCAATAGAAGCGTCACTCATGGTAC
ATTCTTCTCCCACCTTTCTCCCCTCCCCCCAAACCAATGTCTCCTATTCT
TCTATTCCTATTGCTTTCATCCCTCTATTCCTAACATTCTGCCCCCTTGC
TTCACCATAACCATCATCATAATAAGGCGACGGAGGGCGATGAAGGCCTC
CCACCTATCGCACGGGACGAGTCCACTCGCCTGCAATGCCGGTTTTACGA
AGAGCAGTACCCTAACCCAGAGAGCATGGTGATGGTGAAAGTCATGAACA
TCGCTGAGATGGCGGCGGAAGTGATCCTGCTTGAGTACAACGACATTGAG
GTGAGGGCTCCCGGGGGGAGAGAGGGAAGGAGGGGAGGGATGTGAAACAG
GCGGCACGCAAGAGAGAAAAGAATTTGAACTCTTCGTCGTTGGGTGTATA
AGAGTAGGCTGTTCGCCCTCTGGGCCTTTCTTCTCACACGGCCCCTCTCT
CCCACCTTCCCCCTTACTTTATAACAGGGCATGATCCTGCACTCTGAGCT
GTCCCGACGCCGCATCCGTTCCATCAAAAAGCTGATCCGTGTGAACAAGC
TGGAGGTGGTGTCGGTACTGCGGGTGGACAAAGATAAAGGTAAATTTCTG
CGTGTACATTGTTGTGCCTCTACCTACCTCTATTGAACAACCATACGAGC
AGCGAGCAGTGAGCGCAACCCCTTCACCTATGCTGATCCTTCCCTCCCTC
CCTTCCTCTTCCCTCGCCAGGCTACATCGATCTCTCCAAGCGCCGGGTTT
CCCCCGATGACGTTATTAAATGCGAAGAACGTTACAACAAAGCTAAGGCG
GTGCACTCCGTCCTTCGCCACGTGGCCGACCAACACGGCATCTGGCTCGA
GGATCTGTACAAGAAGGTGGGCTGGCCCCTCTACCGCAAGCATGGACACG
CCTTCGATGCTTTCTCCAAGGTACGTGCCTATGTCCTTTTCGTCTTTCCT
CCCGTTCTTCCTTTAATCTGTTCAGCGGATATGGAAGAGCTGTCTCAGCA
CTCATTAACACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCTTAC
CCCCCCAGTCACTCCTTCCCGAAGGCGACGAGCGGTACGAAGACGTGTTT
GCTGACCTTGATATCACCCCTGAGCTGAAAAACAGCATTACTACGTACAT
TAAACGTCGCCTCGCGCCCAAGCCAATCAAAATCCGTGCTGATATTGAAG
TGACGTGCTTTGCTTACGAGGGGATTGAAGCCATCCGTGCGGCGTTGCAG
GCGGGCTTGGACGCCCCTTCTTCGAGCGAGGTGGATATAAAACTAATTGC
GCCACCAATGTAAGCGTCGGGGAGGGAAGGAGAAGGCCTTTCTGTCTATT
TTGTCTTGTCTCTTTCGTTTTGTCTGCCTTCTGTCTGTCTGTCCTTAACT
CCTTCTGCCTATATTGCTCACTTACCCTCCCTCTCTCATTACCTCTTCTA
CTACTAGGTATGTCGTCACTACCAACACGCTAGAGAAGGATGTGGGCATC
GAGAACCTGAACCGAGTGATTGAGAAAATCCGAGCGAAGGTTACCGAAAG
TGAGGGGAGGTTAGAAGTCAAGATGGCACCCAAGGTGGTAAGCCAGCGGG
ACGAGGCGGACTTGCAGGCCATGATCAAGAGGATTGAAGAAGAGAATGAG
GAGGTGGATGGTGATGCCCCGGAGGATGCATAAAGAGAGAAAGGGGAGAA
AGAAAGGAGGGACGGAGGGAGGAGGTGGGGAGGTTGGTCCAGAGCGGAAG
GAACAGGCGAGACATATGCCAGCAGAGGGCGCAAAATAAAAATT
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Coding sequence (CDS) from alignment at chr12:894529..896572+

>NO12G03230.1 ID=NO12G03230.1|Name=NO12G03230.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr12:894529..896572+ (Nannochloropsis oceanica)
ATGGCGACGGAGGGCGATGAAGGCCTCCCACCTATCGCACGGGACGAGTC
CACTCGCCTGCAATGCCGGTTTTACGAAGAGCAGTACCCTAACCCAGAGA
GCATGGTGATGGTGAAAGTCATGAACATCGCTGAGATGGCGGCGGAAGTG
ATCCTGCTTGAGTACAACGACATTGAGGGCATGATCCTGCACTCTGAGCT
GTCCCGACGCCGCATCCGTTCCATCAAAAAGCTGATCCGTGTGAACAAGC
TGGAGGTGGTGTCGGTACTGCGGGTGGACAAAGATAAAGGCTACATCGAT
CTCTCCAAGCGCCGGGTTTCCCCCGATGACGTTATTAAATGCGAAGAACG
TTACAACAAAGCTAAGGCGGTGCACTCCGTCCTTCGCCACGTGGCCGACC
AACACGGCATCTGGCTCGAGGATCTGTACAAGAAGGTGGGCTGGCCCCTC
TACCGCAAGCATGGACACGCCTTCGATGCTTTCTCCAAGTCACTCCTTCC
CGAAGGCGACGAGCGGTACGAAGACGTGTTTGCTGACCTTGATATCACCC
CTGAGCTGAAAAACAGCATTACTACGTACATTAAACGTCGCCTCGCGCCC
AAGCCAATCAAAATCCGTGCTGATATTGAAGTGACGTGCTTTGCTTACGA
GGGGATTGAAGCCATCCGTGCGGCGTTGCAGGCGGGCTTGGACGCCCCTT
CTTCGAGCGAGGTGGATATAAAACTAATTGCGCCACCAATGTATGTCGTC
ACTACCAACACGCTAGAGAAGGATGTGGGCATCGAGAACCTGAACCGAGT
GATTGAGAAAATCCGAGCGAAGGTTACCGAAAGTGAGGGGAGGTTAGAAG
TCAAGATGGCACCCAAGGTGGTAAGCCAGCGGGACGAGGCGGACTTGCAG
GCCATGATCAAGAGGATTGAAGAAGAGAATGAGGAGGTGGATGGTGATGC
CCCGGAGGATGCATAA
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Synonyms
Publications