NO12G03180, NO12G03180 (gene) Nannochloropsis oceanica

Overview
NameNO12G03180
Unique NameNO12G03180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4717
Alignment locationchr12:877042..881758 -

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Properties
Property NameValue
DescriptionDna methyltransferase 1-associated protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:877042..881758 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0043967histone H4 acetylation
GO:0006338chromatin remodeling
GO:0043968histone H2A acetylation
GO:0009987cellular process
GO:0016043cellular component organization
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0035267NuA4 histone acetyltransferase complex
Vocabulary: INTERPRO
TermDefinition
IPR027109Swc4/Dmap1
IPR032563DAMP1_SANT-like
Homology
BLAST of NO12G03180 vs. NCBI_GenBank
Match: EWM25724.1 (dna methyltransferase 1-associated protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 317.8 bits (813), Expect = 6.400e-83
Identity = 226/379 (59.63%), Postives = 243/379 (64.12%), Query Frame = 0
Query:   60 MGDVADILGGARRSQISEGEGLLKDGGFKTGGXXXXXXXKAKRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYPDYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXN---------------------------------------EATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEELEVLRRR 400
            MGDVADILGGARR Q+SE E LL + G K GG       K KRKPAGMSREVFNLIGKEGMAP VVSKK +GLKDKREG ARTRW++TTF+NSARKDQ+K                               +F+HWVKAATDYPDYPFARFNVQTP VEFTD EYK  LAEG   A                 W  EET+VLLELC RFDLRWPVI+DRFP+   XXXXXXXXXXXXXXXXXXXXXXX                                        +A+ SP   RSIEDLQARYYSVRK LRLAR  XXXXXXXXXXX     MFQPGLDEDGD FDH YEKTRRAQL +LF+R+KEEELE LR R
Sbjct:    1 MGDVADILGGARRPQVSERESLLMETGPKAGGTGGAGGNKGKRKPAGMSREVFNLIGKEGMAPVVVSKKAIGLKDKREGTARTRWIWTTFKNSARKDQDK-----------PEGGEEEGKEGENSGTRKGGIFYHWVKAATDYPDYPFARFNVQTPAVEFTDAEYKTCLAEGGKGA----------------GWSKEETRVLLELCRRFDLRWPVIYDRFPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAVMDASISPR-VRSIEDLQARYYSVRKALRLARHAXXXXXXXXXXXTVAPPMFQPGLDEDGDAFDHAYEKTRRAQLARLFKRTKEEELEELRLR 351          
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_005854127.1 (dna methyltransferase 1-associated protein 1, partial [Nannochloropsis gaditana CCMP526] >XP_005855994.1 dna methyltransferase 1-associated protein 1, partial [Nannochloropsis gaditana CCMP526] >EKU20368.1 dna methyltransferase 1-associated protein 1, partial [Nannochloropsis gaditana CCMP526] >EKU22232.1 dna methyltransferase 1-associated protein 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 248.8 bits (634), Expect = 3.700e-62
Identity = 133/221 (60.18%), Postives = 145/221 (65.61%), Query Frame = 0
Query:   60 MGDVADILGGARRSQISEGEGLLKDGGFKTGGXXXXXXXKAKRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYPDYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFP 281
            MGDVADILGGARR Q+SE E LL + G K GG       K KRKPAGMSREVFNLIGKEGMAP VVSKK +GLKDKREG ARTRW++TTF+NSARKDQ+K                               +F+HWVKAATDYPDYPFARFNVQTP VEFTD EYK  LAEG   A                 W  EET+VLLELC RFDLRWP+I+DRFP
Sbjct:    6 MGDVADILGGARRPQVSERESLLMETGPKAGGTGGAGGNKGKRKPAGMSREVFNLIGKEGMAPVVVSKKAIGLKDKREGTARTRWIWTTFKNSARKDQDK-----------PEGGEEEGKEGENSGTRKGGIFYHWVKAATDYPDYPFARFNVQTPAVEFTDAEYKTCLAEGGKGA----------------GWSKEETRVLLELCQRFDLRWPIIYDRFP 199          
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_020180104.1 (SWR1-complex protein 4 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 97.4 bits (241), Expect = 1.400e-16
Identity = 85/297 (28.62%), Postives = 125/297 (42.09%), Query Frame = 0
Query:  101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTR--WVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393
            +RKP G+SREV+ L G  GMAP + + +   LK +R  + + +  W +  F +SAR D  +L                                +HWV+   + P   DY FA++N +   +++TDEEY+ +L E                      W  EET  L ELC RFDLR+ VI DRFP A                                   RS+EDL++RYYSV + L +AR                +V   P + E   TF+  +E  R+  L+ LF ++K++E
Sbjct:   29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLK-RRPAVEKEKVAWQWLPFTSSARTDNLQL--------------------------------YHWVRVVNNVPPTGDYDFAKYNTKVDVLKYTDEEYEKYLTE--------------------PTWSREETDQLFELCQRFDLRFIVIADRFPTA-----------------------------------RSVEDLKSRYYSVTRALLIARARSF-----------DEVAGNPLVKE---TFNAAHETERKRALSALFSQTKQQE 223          
BLAST of NO12G03180 vs. NCBI_GenBank
Match: EMS53178.1 (DNA methyltransferase 1-associated protein 1 [Triticum urartu])

HSP 1 Score: 96.7 bits (239), Expect = 2.300e-16
Identity = 86/305 (28.20%), Postives = 124/305 (40.66%), Query Frame = 0
Query:  101 KRKPAGMSREVFNLIGKEGMAPAV-------VSKKEVGLKDK---REGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393
            +RKP G+SREV+ L G  GMAP +       + ++ V  K+K        R  W +  F +SAR D  +L                                +HWV+   + P   DY FA++N +   +++TDEEY+ +L E                      W  EET  L ELC RFDLR+ VI DRFP A                                   RS+EDL++RYYSV + L +AR                +V   P + E   TF+  +E  R+  L+ LF ++K++E
Sbjct:   29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLKRRPVVEKEKLVLLNSCVRVAWQWLPFTSSARTDNLQL--------------------------------YHWVRVVNNVPPTGDYDFAKYNTKVDVLKYTDEEYEKYLTE--------------------PTWSREETDQLFELCQRFDLRFIVIADRFPTA-----------------------------------RSVEDLKSRYYSVTRALLIARARSF-----------DEVAGNPLVKE---TFNAAHETERKRALSALFSQTKQQE 232          
BLAST of NO12G03180 vs. NCBI_GenBank
Match: POM74097.1 (Swr1 complex subunit Swc4 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 92.8 bits (229), Expect = 3.400e-15
Identity = 94/351 (26.78%), Postives = 131/351 (37.32%), Query Frame = 0
Query:   60 MGDVADILG------GARRSQISEGEGLLKDGGFKTGGXXXXXXXKAKRKPAGMSREVFNLIGKEGMAPAVVSK--KEVGLKDK---REGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYPDYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLAR--QXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEELEVLR 398
            M DVA ILG      GA  +  S+ + L   G               ++K  GM REV  L+     A   + +   +  LK K   R+     +W+  +FRN AR                                       HW KA  + PDY F+RFNV++    ++DEEY+A LA                    ++ W  EET +LL LC RFDLRW VI D++                            N    + + QRS+ED++ RYY V + L   R  +              P          D   F+  YEK R+ QL  +F R+ EEE E+ R
Sbjct:    1 MSDVAQILGLAGPKSGANGTAASDLDQLKPSGAPPAARGKQSGGTSKQKKLTGMQREVLELLESNHRASHALYQGFGKTSLKQKWQARQKSPAVKWIRKSFRNPARAS------------------------LTGENGEEGLTLSHWGKAHLEQPDYVFSRFNVKSETTSYSDEEYEAALAHHQDP---------------MMKWTKEETDLLLNLCQRFDLRWVVISDKY----------------------------NSNPVAKAEQRSMEDIKYRYYEVTRLLAEYRDKKTRVATMGAGIASSTPSTPGSASSALDHYRFNIAYEKQRKRQLDLVFSRTVEEENEIRR 284          
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_003567993.1 (SWR1-complex protein 4 [Brachypodium distachyon] >KQK05138.1 hypothetical protein BRADI_2g18250v3 [Brachypodium distachyon])

HSP 1 Score: 92.4 bits (228), Expect = 4.400e-15
Identity = 84/297 (28.28%), Postives = 122/297 (41.08%), Query Frame = 0
Query:  101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTR--WVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393
            +RKP G+SREV+ L G  GMAP + + +   LK +R  + + +  W +  F +SAR D  +L                                +HWVK A   P   DY FA++N +   +++T+EEY+ +L E                      W  EET  L ELC RFDLR+ VI DRFP                                     RS+EDL++RYYSV + L +AR                +V   P + E   TF+  +E  R+  L+ L  ++K+ E
Sbjct:   29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLK-RRPAVEKEKIAWQWLPFTSSARTDSLQL--------------------------------YHWVKVANGVPPSGDYEFAKYNTKVDVLKYTEEEYEKYLTE--------------------PTWSREETDQLFELCERFDLRFIVIADRFP-----------------------------------TNRSVEDLKSRYYSVTRALLIARARSF-----------DEVAGNPLVKE---TFNAAHETERKRALSALLSQTKQHE 223          
BLAST of NO12G03180 vs. NCBI_GenBank
Match: KFK37486.1 (hypothetical protein AALP_AA4G263600 [Arabis alpina])

HSP 1 Score: 92.0 bits (227), Expect = 5.700e-15
Identity = 82/297 (27.61%), Postives = 118/297 (39.73%), Query Frame = 0
Query:   99 KAKRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393
            ++ RKP G+SREV+ L G  G+AP + S     LK +     +  W +  F NSARKD  +L                                +HWV+   D P   DY FA++N     V++TDEEY+  L +                      W  EET  L ELC RFDLR+ +I DRFP +                                   R++E+L+ RYYSV + L  AR              P  V   P + E    +D T+++ R+  LT +  +S+ +E
Sbjct:   30 ESHRKPDGISREVYALTG--GVAPLMPSIDVTQLKRRPVADEKVAWKWLPFTNSARKDDLQL--------------------------------YHWVRVVNDVPPTGDYTFAKYNKSVEIVKYTDEEYENHLTD--------------------PVWTKEETDQLFELCERFDLRFTIIADRFPLS-----------------------------------RTLEELKDRYYSVSRALLRAR-----------AQSPADVANHPLMKE---PYDITWDRERKRALTMVLSQSRHQE 223          
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_015639690.1 (PREDICTED: SWR1-complex protein 4 [Oryza sativa Japonica Group] >AAV67815.1 unknown protein [Oryza sativa Japonica Group] >BAF18097.1 Os05g0540800 [Oryza sativa Japonica Group] >EEC79616.1 hypothetical protein OsI_20813 [Oryza sativa Indica Group] >BAS95117.1 Os05g0540800 [Oryza sativa Japonica Group])

HSP 1 Score: 89.7 bits (221), Expect = 2.900e-14
Identity = 83/297 (27.95%), Postives = 123/297 (41.41%), Query Frame = 0
Query:  101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTR--WVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393
            +RKP G+SREV+ L G  GMAP + + +   LK +R  + + +  W +  F +SAR D  +L                                +HWV+     P   DY FA++N +   +++TDEEY+ +L +                     AW  EET  L ELC RFDLR+ VI DRFP                                     RS+EDL++RYYSV + L +AR                +V   P + E   TF+  +E  R+  L+ L  ++K++E
Sbjct:   29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLK-RRPAVEKEKIAWQWLPFTSSARTDNLQL--------------------------------YHWVRVVNGAPPTGDYHFAKYNKKADVLKYTDEEYEKYLTD--------------------PAWSREETDKLFELCERFDLRFIVIVDRFP-----------------------------------TDRSMEDLKSRYYSVTRALLIARARSF-----------DEVAGNPLVKE---TFNAAHETERKRALSALLSQTKQQE 223          
BLAST of NO12G03180 vs. NCBI_GenBank
Match: EEE64536.1 (hypothetical protein OsJ_19387 [Oryza sativa Japonica Group])

HSP 1 Score: 89.7 bits (221), Expect = 2.900e-14
Identity = 83/297 (27.95%), Postives = 123/297 (41.41%), Query Frame = 0
Query:  101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTR--WVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393
            +RKP G+SREV+ L G  GMAP + + +   LK +R  + + +  W +  F +SAR D  +L                                +HWV+     P   DY FA++N +   +++TDEEY+ +L +                     AW  EET  L ELC RFDLR+ VI DRFP                                     RS+EDL++RYYSV + L +AR                +V   P + E   TF+  +E  R+  L+ L  ++K++E
Sbjct:   29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLK-RRPAVEKEKIAWQWLPFTSSARTDNLQL--------------------------------YHWVRVVNGAPPTGDYHFAKYNKKADVLKYTDEEYEKYLTD--------------------PAWSREETDKLFELCERFDLRFIVIVDRFP-----------------------------------TDRSMEDLKSRYYSVTRALLIARARSF-----------DEVAGNPLVKE---TFNAAHETERKRALSALLSQTKQQE 223          
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_012700354.1 (SWR1-complex protein 4 [Setaria italica])

HSP 1 Score: 89.7 bits (221), Expect = 2.900e-14
Identity = 80/296 (27.03%), Postives = 119/296 (40.20%), Query Frame = 0
Query:  101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREG-MARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393
            +RKP G+SREV+ L G  GMAP + + +   LK +      +  W +  F +SAR D  +L                                +HWV+     P   DY FA++N +   +++TDEEY+ +L +                     AW  EET  L ELC RFDLR+ VI DRFP                                     RS+EDL++RYYSV ++L + R                 V   P +    D++D  +E  R+  L+ L  ++K++E
Sbjct:   29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLKRRPAAEKEKVAWQWLPFTSSARSDNLQL--------------------------------YHWVRVVNGVPPTGDYQFAKYNKKVDVLKYTDEEYEKYLID--------------------PAWSREETDQLFELCERFDLRFIVIADRFPTT-----------------------------------RSVEDLKSRYYSVSRSLLIHRSRSF-----------DDVSGNPLVK---DSYDAAHETERKRALSALLSQTKQQE 223          
The following BLAST results are available for this feature:
BLAST of NO12G03180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25724.16.400e-8359.63dna methyltransferase 1-associated protein 1 [Nann... [more]
XP_005854127.13.700e-6260.18dna methyltransferase 1-associated protein 1, part... [more]
XP_020180104.11.400e-1628.62SWR1-complex protein 4 [Aegilops tauschii subsp. t... [more]
EMS53178.12.300e-1628.20DNA methyltransferase 1-associated protein 1 [Trit... [more]
POM74097.13.400e-1526.78Swr1 complex subunit Swc4 [Phytophthora palmivora ... [more]
XP_003567993.14.400e-1528.28SWR1-complex protein 4 [Brachypodium distachyon] >... [more]
KFK37486.15.700e-1527.61hypothetical protein AALP_AA4G263600 [Arabis alpin... [more]
XP_015639690.12.900e-1427.95PREDICTED: SWR1-complex protein 4 [Oryza sativa Ja... [more]
EEE64536.12.900e-1427.95hypothetical protein OsJ_19387 [Oryza sativa Japon... [more]
XP_012700354.12.900e-1427.03SWR1-complex protein 4 [Setaria italica][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL129nonsL129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR010ngnoR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010268NSK010268Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03180.2NO12G03180.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G03180.1NO12G03180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639912gene_5494Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100154g2gene4790Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03180.2NO12G03180.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G03180.1NO12G03180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03180 ID=NO12G03180|Name=NO12G03180|organism=Nannochloropsis oceanica|type=gene|length=4717bp
ATGAGTTTCATCTTTTTCCTTTGCGTAGAAAAGGAAGGAGACGCAGACAC
TAATGCGTAGCGCCCCACTTTTCTCAAGCGAAAACTACCCGGCAGTCCCA
CCATCACTCCCGCCCTCTTCCTCCAGGTCCTGACCACACCCATCACGCAC
AAATGCACGGTCGTACTTGCTCAAAGACCACACTAATCATACCGAAATAT
GCTGACCGTGTTTTGTTTGATGTCCAATCCATAGGCGGACCAAAGGGAAC
CAACCACAAGCTCCATCACAAGCTTCTTCGCCTCGCTTGCGCATCCCGTG
TCCAGCCTCGCTTCCCTCCAACAATAGCAATGGGAGACGTGGCCGACATC
TTGGGCGGTGCCCGTCGGTCGCAAATTTCAGAAGGCGAGGGCTTGCTTAA
GGACGGCGGGTTCAAAACCGGTGGCGGTGGTGGGGCAGGGGCCAACAAAG
CCAAGAGGAAACCGGCAGGGATGAGTCGCGAGGTGTTCAATTTGATTGGA
AAGGAAGGCATGGCCCCTGCAGTGGTTAGCAAGAAGGAAGTTGGGCTCAA
GGACAAGCGGGAGGGTATGGCAAGGACTCGATGGGTCTTCACAACTTTCC
GAAACTCGGCCCGCAAGGACCAAGAGAAGCTAGACAAACTGCAGCAGGGG
CAGGGAGGAGTAGGGGAGGAGGAAGCGAAAGAAGGCGGGGCTAACGGTGC
TACTGCCGCTGCTGCCGGGCAAGTGTTTTTCCATTGGGTCAAGGCGGCGA
CGGATTACCCTGACTACCCTTTCGCGCGATTTAACGTGCAGACACCGCCG
GTAGAATTTACAGATGAGGAGTACAAAGCGTTTTTGGCAGAGGGAGACGC
CGCAGCAGCAGCAGCAATGGCGGAAGCCACGGCAAGAGGAGCAGCAGGAA
TAGTAGCATGGGGGATAGAGGAAACGAAGGTGTTGTTGGAACTGTGCAGT
CGGTTTGATTTGCGGTGGCCTGTCATCCATGATCGCTTCCCAGAAGCGAT
CGCTGATGCAGCGGCTGCGGCAAAAAAGGGAGAGAAGGAGGGAGGGCAGG
AGGGAGGGGCCGCAAGCAAGGCAAACGAAGCGACGAAGTCTCCTTCTCCT
CAACGGTCGATCGAAGACCTGCAAGCGCGTTACTATTCTGTGCGCAAGAC
CTTGCGGCTGGCACGGCAAGCTGCTGCGGCGGCGGCGGCAGCGCAGGGAG
GGGTGGCCCCACCGCAGGTCATGTTCCAGCCAGGATTGGACGAGGACGGG
GACACATTTGATCACACCTATGAGAAGACAAGGAGGGCACAGCTGACGCA
ATTGTTCAGGAGGAGCAAGGAGGAAGAATTGGAGgtattaagaagaagat
ggtttaaatcgagacgctcatgttttgagtggtggactctcacgcctcct
cttccccctcgcaccctccttccctccctccccatatcacacagGAACTC
CGCCTCCGCGAAGAGCTCAAGACCATCGACGCCGCCCTCAAGCGCGTGCG
AAAACACCCCCACAAGTCTATCGTTCGAGACCCCGTCGAAGCCAAGGCCG
CCACTACCACCCACCCCGATCCTCAGCAACCAGGGCAGTACCGGACCATC
CCCCTGGTCAACGAAAAATACATTTATGAAGCGCGTCCCGAGCCCAAGCC
AGGCCACCCTTACCTTCAAAGTGCTCGTCTGTCGGTGCCACTCGCCCCTC
CCCGGTTACAGAAGGGGATGCTTCAAAAAGTGAAGCAGTTGTCGATCGAC
TTGGGCCTGACGCCGCGGCCGCTGCCCACCAAGACCGTTTGTGATTTATA
CGACGACTTGCGGCGGGATATGGTAGAATTGTTCACTTTGCAGAAATTGG
GGAGGCAGAAGGAGGTACTGCTTGAGGGCTTGAAGGAGGGACAGGCGGAA
AGTGTGGTGCTTGGCCGACAGGCCATGTTGGGGGCGGCGGGAGCCTGGGA
GGGAGGGGTGGGGGGAGGGACGCAGGGGGGTGGGGTGAGGATAGGAGGAG
GAGGAGGAGGAGGAGGAGgcggaggaggaggaggaggagGAGGAGGGCAG
AGAAAGGGTAGCCATAGGAAGGGACAGATGTCATTGCCGAGGCAAGGGAG
TGGGCATATAGGTGCGGGTGGGGGAGGAGGGATGTATGTGCAACAACAAC
AGCAGCTTCATTATCAGGGGATAAGCCATGATTCGAGTTTCTCGGCTGCA
GACGACCGGAAACGGAAAAGATAAATAGGGGGAGGGAGGGAGGGAGGGAG
GGAGGGGGAGGGGTTTACAGAGGGGTGAGACTTAAAGTTGAAGCAAAGAG
AGGACAGATACGCGTGCCAGGCAACGTTTGTTCACTTCTCTCTTTCTTTT
TCTTGGGTCATTCAATCGCATGTTTTAAAAACTTTCGTTCAGTTGAATCG
TGTCCACGCTTCGCTCACCGCACTCTACGCTACCGACAAGGGTACTTTCC
GTTTTGTTCTCTCCAGCCGGTCTTACCCACGCACCCATGCTCTTCCTGTC
TTCATATTCCATACACCTACATTCTCCCTCCATCCCATCCGCAAACCAAG
TCCCCCAACATTCTGGAAGTTCCTTCCCCTTCGACCAATCAATAAATAAC
AATTTCCTCCTCTTCACTCCCTTCCCTTCCTGTTTCATCCCAACGCCACC
TAGTACCGATCCTCCTCTTCCGTCGTTGCCGCTGCGGCCGCCGCAGCCAT
TAGACCCCATCCTCCTTCCTTCCCCTTCCTGTTCCCGTAGCTCTGCACTA
CAGGGGATATCCCCGCCGGAGTCTTCCACCGTGGGGACCGGCGTGGCGAC
GGCGTGCTCCCCAATAGCGGAGAAGATGGAGCCGAAGAAGCAGGAGCAGC
AGGAGCGGCAGCAGCAGCTGCGGCAGGGAGAGGCGGCAGGCTTACAGAGA
GGAGAGGACAGCTCGGTCCTTCTCCATTGGCGTGGCCACATCCCTCACGG
CTGGGGCTTCGGCGAGAACTTCGCCTGCAGTTCAATGCCCCTTCCTTCCG
ACCAATGCTACTGCTGGTACTGTTGCTGGTACTGGTGCTACTGGTGCTAT
TGCCACTGACCCGTTGCTGGTGCTGGTGCCGGTGTTGGGAGGACTGATGC
CAAGACGTGGAGAAAGACCCACGGCTGCTGCTGCTCCCGACTACCACACC
CATGGCCGAACGCGAGACAAAGTTCAGAAAGTTGAGCGTGCCCGCCAGAA
GAATCACAGGCCAGGCCACCAAAGTGATCAAGAGCAGGGCAGGAAGGAGG
ACGGTGATAATCAGCGGCAACATCAACAAAAAAAGCAGCGAGGCCAAGCT
CCCCTGAGGATGAATGATCCGTGTCCCTCCCTCCTTCTCCCCCCTAAAAC
TCTGCGTCTGAATAAACCGTTCCAGCAGCGCGTCTTTTTCCAACCATCGA
GCATCCAACCACTGCTCGGGATTATTAACCAAGGCCTCATCGACTTCGTA
CGTCTTGACGTGGACATGAACCTTTGGACATGCCCGTCCCTGCATCATTT
TGAACACGTTCGGGACGTCCATGTCTTGTTCTCGGTCGTAGCCCATCTCA
TAGGTGGGAACTTCGCCTGAGTAACCGTGATAGGCGACGGTCAGATCGTA
AATAACAGGAGAATGGCCATGGGGGGACTGGCACATTGTCTCGACCAAAG
CCGCAAAGCCCGTGGAACGCGGTAGGATGCAATGGTCGAGGTGAGGCCTC
TTCTGCTCACGGCCGAAGCGGTGGGACTTGGTGACAGCTTCAGTGTTGAT
GGTCGTGCCCTCTGGAAAGAGGAGCAAGGCACACTTATACCCGTCCTCGA
CAAACGACGACAACAAGCGCGTGAACGCCCTCCGGTCCCTCTGCCAATTG
CGTTGCAAAAAACAAAATTCAAATTGTTTCATCCCCCAGCCCACGATGGG
GACCACAGCCAAATCGGCTTTCAAAATGATCTTCAACCGTCCATGCATTC
CGTAGGCCCGCGCCACTTCCCAGACATACCAAAAATCCGCATCCACCTGG
TGATTCGCGATGATGATGGCCGGGCGAGAGGAATCCACAGTGTTAAGCAC
GATGTCCCCTGTCAGAATCATCTCGCTCTTAGGGAGCAAGTAGCTCATTA
CTGAGACCCACATCCGTTGCCACCAGTGACCGATGAGCCTTCGGGCCGTC
AGGCGGGACCAAGGACGGACGGTTACAAAAACGAGGAAATTCAAAATATT
GATGCCGAAGGACATGGCCATCACGAGCCAGCAGAGGACGACAGCGTGGG
CCATGGAGAAGATTGTGCTCTTGAATGCTCCTCGGGGGGTGCCGTTCGTG
CCGGAGGCGGAAGGGTTGTTTGTCTGCCTTTGAATGTCGCCTCGCCGCTG
TTGAGGGGTCCTGCCATTGCCATTGCTCTGAGAGTCCATCTCGGATTCTG
AGGATGAGGAGTGGAGGGAGGGGGACTCACGGAGGGAGTTTTGATTGAAA
TAGTCGGGTGGGCTGGAGGCGTGGGTGCTGCGGATCGGATTATCAATGCT
GTCGGAGGAGCTTTCGTGCTGGTAGGCGCGCGACCTGGGAGGGTCCGCAT
AGGTCGGCATGGCTTGTGTGACTGACGTGAGTGAGAAACTGAGGAGACGA
GGAGACGAGGAGGCCTCGTGGTTGTCGTGTGGGGCGTGTGGGAGCAATGC
GCGGGAGTTGGGCTGGACCGTGAAGCTTCTTCTTTCTGCTGTCAGGTGGC
GGTGTCAAGAGGTTGAT
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protein sequence of NO12G03180.2

>NO12G03180.2-protein ID=NO12G03180.2-protein|Name=NO12G03180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MHGRTCSKTTLIIPKYADRVLFDVQSIGGPKGTNHKLHHKLLRLACASRV
QPRFPPTIAMGDVADILGGARRSQISEGEGLLKDGGFKTGGGGGAGANKA
KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFR
NSARKDQEKLDKLQQGQGGVGEEEAKEGGANGATAAAAGQVFFHWVKAAT
DYPDYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGI
VAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIADAAAAAKKGEKEGGQE
GGAASKANEATKSPSPQRSIEDLQARYYSVRKTLRLARQAAAAAAAAQGG
VAPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEELEVLRRRW
FKSRRSCFEWWTLTPPLPPRTLLPSLPISHRNSASAKSSRPSTPPSSACE
NTPTSLSFETPSKPRPPLPPTPILSNQGSTGPSPWSTKNTFMKRVPSPSQ
ATLTFKVLVCRCHSPLPGYRRGCFKK*
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protein sequence of NO12G03180.1

>NO12G03180.1-protein ID=NO12G03180.1-protein|Name=NO12G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp
MHGRTCSKTTLIIPKYADRVLFDVQSIGGPKGTNHKLHHKLLRLACASRV
QPRFPPTIAMGDVADILGGARRSQISEGEGLLKDGGFKTGGGGGAGANKA
KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFR
NSARKDQEKLDKLQQGQGGVGEEEAKEGGANGATAAAAGQVFFHWVKAAT
DYPDYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGI
VAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIADAAAAAKKGEKEGGQE
GGAASKANEATKSPSPQRSIEDLQARYYSVRKTLRLARQAAAAAAAAQGG
VAPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEELEELRLRE
ELKTIDAALKRVRKHPHKSIVRDPVEAKAATTTHPDPQQPGQYRTIPLVN
EKYIYEARPEPKPGHPYLQSARLSVPLAPPRLQKGMLQKVKQLSIDLGLT
PRPLPTKTVCDLYDDLRRDMVELFTLQKLGRQKEVLLEGLKEGQAESVVL
GRQAMLGAAGAWEGGVGGGTQGGGVRIGGGGGGGGGGGQRKGSHRKGQMS
LPRQGSGHIGAGGGGGMYVQQQQQLHYQGISHDSSFSAADDRKRKR*
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Synonyms
Publications