NO12G03160, NO12G03160 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_010460401.1 (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Camelina sativa]) HSP 1 Score: 140.6 bits (353), Expect = 1.300e-29 Identity = 78/182 (42.86%), Postives = 114/182 (62.64%), Query Frame = 0 Query: 119 VNLNSWTNRLLALNVAIFFLQQVNPS-ITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHR-MVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPR 299 VN WTN LLA+NV ++ Q + + GAK + LI RG+L RL T +LH + HLM N Y++ ++G E L GG K +LS+Y+ S +A + +S+ +AP S+GAS A+ GL+G+V +F RH+ MV L +AQ + +N +G+ S RIDN+GH+GGL+GG WL GP+ Sbjct: 127 VNGRRWTNVLLAINVIMYIAQVASDGRVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAESL-GGPKRFLSVYLTSAIASSAMSYWFNKAP-SVGASGAIFGLVGSVAVFVIRHKQMVGGGNEDLMQIAQVIALNMTMGLMSRRIDNWGHIGGLLGGTAMAWLLGPQ 306
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_016444690.1 (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Nicotiana tabacum]) HSP 1 Score: 140.6 bits (353), Expect = 1.300e-29 Identity = 73/176 (41.48%), Postives = 112/176 (63.64%), Query Frame = 0 Query: 124 WTNRLLALNVAIFFLQ-QVNPSITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHR-MVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGP 298 WTN LALN+ ++ Q + + GAK + LI +G+L RL T LH ++ HLM N Y++ ++G +E + G + Y++LY+ S +A + +S+ +AP ++GAS A+SGL+G+ +F RHR MV EG LR +A +V+N +G+ + IDN+GHLGGL+GG WL GP Sbjct: 130 WTNIFLALNILVYIAQVATDGKLLFWGAKINSLINKGQLWRLITSSFLHANIGHLMVNCYSLNSVGPGVEKI-SGPRRYVALYLTSAIASSAMSYWLSKAP-AVGASGAISGLVGSFAVFVLRHRGMVKGTEGDLRYIANVIVLNMAIGLLNKGIDNWGHLGGLIGGAAASWLLGP 303
BLAST of NO12G03160 vs. NCBI_GenBank
Match: NP_001185093.1 (RHOMBOID-like protein 10 [Arabidopsis thaliana] >AEE30603.1 RHOMBOID-like protein 10 [Arabidopsis thaliana]) HSP 1 Score: 139.4 bits (350), Expect = 2.900e-29 Identity = 81/199 (40.70%), Postives = 121/199 (60.80%), Query Frame = 0 Query: 119 VNLNSWTNRLLALNVAIFFLQQVNP-SITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHR-MVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNS 316 VN WTN LLA+NV ++ Q + + GAK + LI RG+L RL T +LH + HLM N Y++ ++G E L GG K +L++Y+ S VA + +S+ +AP S+GAS A+ GL+G+V +F RH+ MV L +AQ + +N +G+ S RIDN+GH+GGL+GG WL GP+ +T R +++S Sbjct: 124 VNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAESL-GGPKRFLAVYLTSAVASSAMSYWFNKAP-SVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQIIALNMAMGLMSRRIDNWGHIGGLLGGTAMTWLLGPQWKYEYTTRDGRRVFMDS 320
BLAST of NO12G03160 vs. NCBI_GenBank
Match: EJK61912.1 (hypothetical protein THAOC_17510, partial [Thalassiosira oceanica]) HSP 1 Score: 139.4 bits (350), Expect = 2.900e-29 Identity = 77/191 (40.31%), Postives = 125/191 (65.45%), Query Frame = 0 Query: 127 RLLALNVAIFFLQQVNPSITLMGAKNDKLIRRG-ELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVWNLEGPLR--SVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRL----VPLHTKEGQFR 311 ++ +N+A++ LQ + P +T GAK L+ G +LHRL TP+ LHG + HL+ANSY++ ++G+ +E FG ++ L+ Y++SGVAGN S + P ++GAS A+ GL+GA F R+ ++ G + ++ + + IN VLGM++P IDN+GH+GG +GG+ WL GP+L VPL + +G+F+ Sbjct: 221 KIFLVNIAVYGLQTLMPQLTAWGAKRSDLLLEGRQLHRLITPVFLHGGIGHLVANSYSLKSMGNNVEGAFGPART-LATYLVSGVAGNIFSAVNSPNP-AVGASGAIFGLVGAYYTFLARNSEIFGHSGRAQKGALLETIGINLVLGMTNPVIDNWGHIGGFIGGVGMSWLIGPKLYVARVPLDS-DGEFQ 408
BLAST of NO12G03160 vs. NCBI_GenBank
Match: OAP18305.1 (RBL8 [Arabidopsis thaliana]) HSP 1 Score: 139.4 bits (350), Expect = 2.900e-29 Identity = 81/199 (40.70%), Postives = 121/199 (60.80%), Query Frame = 0 Query: 119 VNLNSWTNRLLALNVAIFFLQQVNP-SITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHR-MVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNS 316 VN WTN LLA+NV ++ Q + + GAK + LI RG+L RL T +LH + HLM N Y++ ++G E L GG K +L++Y+ S VA + +S+ +AP S+GAS A+ GL+G+V +F RH+ MV L +AQ + +N +G+ S RIDN+GH+GGL+GG WL GP+ +T R +++S Sbjct: 124 VNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAESL-GGPKRFLAVYLTSAVASSAMSYWFNKAP-SVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQIIALNMAMGLMSRRIDNWGHIGGLLGGTAMTWLLGPQWKYEYTTRDGRRVFMDS 320
BLAST of NO12G03160 vs. NCBI_GenBank
Match: EJK50102.1 (hypothetical protein THAOC_30966 [Thalassiosira oceanica]) HSP 1 Score: 139.0 bits (349), Expect = 3.800e-29 Identity = 77/191 (40.31%), Postives = 125/191 (65.45%), Query Frame = 0 Query: 127 RLLALNVAIFFLQQVNPSITLMGAKNDKLIRRG-ELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVWNLEGPLR--SVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRL----VPLHTKEGQFR 311 ++ +N+A++ LQ + P +T GAK L+ G +LHRL TP+ LHG + HL++NSY++ ++G+ +E FG ++ L+ Y++SGVAGN S + P ++GAS A+ GL+GA F R+ ++ G + ++ + + IN VLGM++P IDN+GHLGG +GG+ WL GP+L VPL + +G+F+ Sbjct: 210 KIFLVNIAVYGLQTLMPQLTAWGAKRSDLLLEGRQLHRLITPVFLHGGIGHLVSNSYSLKSMGNNVEGAFGPART-LATYLVSGVAGNIFSAVNSPNP-AVGASGAIFGLVGAYYTFLARNSEIFGHSGRAQKGALLETIGINLVLGMTNPVIDNWGHLGGFIGGVGMSWLIGPKLYVARVPLDS-DGEFQ 397
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_020867737.1 (RHOMBOID-like protein 10, chloroplastic [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 138.7 bits (348), Expect = 4.900e-29 Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 0 Query: 119 VNLNSWTNRLLALNVAIFFLQQVNP-SITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHR-MVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNS 316 VN WTN LLA+NV + Q + + GAK + LI RG+L RL T +LH + HLM N Y++ ++G E L GG K +L++Y+ S VA + +S+ +AP S+GAS A+ GL+G+V +F RH+ MV L +AQ + +N +G+ S RIDN+GH+GGL+GG WL GP+ +T R +++S Sbjct: 121 VNGRRWTNVLLAINVIMCIAQVASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAESL-GGPKRFLAVYLTSAVASSAMSYWFNKAP-SVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQVIALNMTMGLVSRRIDNWGHIGGLLGGTAMAWLLGPQWKYEYTTRDGRRVFMDS 317
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_006349388.1 (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Solanum tuberosum]) HSP 1 Score: 137.5 bits (345), Expect = 1.100e-28 Identity = 74/176 (42.05%), Postives = 111/176 (63.07%), Query Frame = 0 Query: 124 WTNRLLALNVAIFFLQ-QVNPSITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHR-MVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGP 298 WTN LALN+ I+ Q + + GAK + LI +G+L RL T LH ++ HLM N Y++ ++G +E + G K Y++LY+ S +A + +S+ +AP ++GAS A+ GL+G+ +F RHR MV EG LR +A +V+N +G+ + IDN+GHLGGL+GG WL GP Sbjct: 123 WTNIFLALNILIYIAQVATDGKLLFWGAKINSLIDKGQLWRLITSSFLHTNIVHLMVNCYSLNSVGPGVEKV-SGPKRYVALYLTSAIASSAMSYWLSKAP-AVGASGAIFGLVGSFAVFVLRHRGMVKGTEGDLRYIANVIVLNLAIGLMTKGIDNWGHLGGLIGGAATSWLLGP 296
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_005645237.1 (rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169] >EIE20693.1 rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 137.5 bits (345), Expect = 1.100e-28 Identity = 76/196 (38.78%), Postives = 123/196 (62.76%), Query Frame = 0 Query: 125 TNRLLALNVAIFFLQQVN-PSITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVWNLEGP--LRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNSPI 318 T+ LL LN A++ Q V+ + L+GAK+++LIR GE RL TP+ LH +L HL+ N+Y++ +LG +E L G + ++S+Y S + G+ S+A +P S+GAS A+ GL GA+ ++ RHR + G L S+ Q++ +N +G+++PRID +GH GGL+GG + +L GP + K G+ + N P+ Sbjct: 38 TDILLVLNAAVYVAQLVSKDKLLLLGAKDNQLIRAGEWWRLLTPVALHANLIHLLTNNYSLNSLGPAVEGLCGRQR-FVSVYTASALVGSVASYAFNPSP-SVGASGAIFGLGGALAVYAARHRKLMGSRGDAILSSLGQSLALNVAIGLTTPRIDQWGHFGGLIGGALTAYLLGPNIEVFQGKGGKRQVRDNPPL 231
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_018449203.1 (PREDICTED: RHOMBOID-like protein 10, chloroplastic isoform X3 [Raphanus sativus]) HSP 1 Score: 137.1 bits (344), Expect = 1.400e-28 Identity = 85/209 (40.67%), Postives = 123/209 (58.85%), Query Frame = 0 Query: 124 WTNRLLALNVAIFFLQQV-NPSITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHR-MVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNS---PILQTSLAEAGR 328 WTN LLA+NV ++ Q N + GAK + LI RG+L RL T +LH + HLM N Y++ ++G E L GG K +L++Y+ S VA + +S+ +AP S+GAS A+ GL+G+V +F RH+ MV L +AQ + +N LG+ S IDN+GH+GGL+GG WL GP+ +T R +V+ P+L E GR Sbjct: 130 WTNVLLAVNVIMYIAQVASNGRVLTWGAKVNSLIDRGQLWRLATSSVLHANPMHLMINCYSLNSIGPTAESL-GGPKRFLAVYLTSAVASSAMSYWLNKAP-SVGASGAIFGLVGSVAVFVMRHKQMVRGGNEDLMQIAQVIALNMTLGLVSRGIDNWGHIGGLLGGTAMAWLVGPQWKYEYTTRDGRRVFVDRAPIPLLLRWRNERGR 336 The following BLAST results are available for this feature:
BLAST of NO12G03160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03160 ID=NO12G03160|Name=NO12G03160|organism=Nannochloropsis oceanica|type=gene|length=1763bpback to top protein sequence of NO12G03160.1 >NO12G03160.1-protein ID=NO12G03160.1-protein|Name=NO12G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bpback to top Synonyms
Publications
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