NO12G03160.1, NO12G03160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03160.1
Unique NameNO12G03160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1763
Alignment locationchr12:871556..873318 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:871556..873318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G03160.1 vs.
Match: EWM25720.1 (rhomboid-like protein 10 [Nannochloropsis gaditana])

HSP 1 Score: 482.3 bits (1240), Expect = 1.800e-132
Identity = 294/477 (61.64%), Postives = 342/477 (71.70%), Query Frame = 0
Query:   12 PLLFLAHHTIAAPASLSLSLVRHRHSFTWFSPPLAWLRHTQQHT-----PPPPSSTLHSSSTPSWFRAH----ILPRTRLVPAYGTAGRGRRGQQHGGRGGHRGRGGMGGGTGEGGVNLNSWTNRLLALNVAIFFLQQVNPSITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNSPILQTSLAEAGRKVRGSLGRTKGGRQGGQLGQQPKQRWGGVTQQQQQQQQQQQQQQQQQQQQHARHGWSKKVPTWWQRLGTFLHRGGDEGGREGGREGGRGGGWLAYVGAPGG--GGWERRGRSGRVLRDGRGRGWSSQGGRGCAQGPYTTGLSLEVMMGGRGG 478
            PL+  A  T+A+    S + V   HSF     P+AW++H QQH+     PPPPSS + +S++ S    H    +L R R +PAYG +GRGRRGQ +GGRGG  GRGG+ G  GEGG++L++WTNRLLALNVAIF  QQV+PSITLMGAKND+LIRRGEL+RLFTPMLLHGD+QHLMANSYTMYNLGHFIEPLFGG   YL+LY+LSG+AGN LSF SGRAP+SIGASTAVSGLLGAVGLFCYRHR VWNLEGPLRSVAQAVVINGVLGMSS RIDNFGHLGGLVGG VCGWLFGPRLVPL T+EG FRGYVNSPILQT  A  GR+VRG LGR  G      LG  P +  GG  Q   ++   +++Q+              K   WW +LG FLHRGG++G       GG G G LA+V  PGG  GG E+  RS      G GR W  +GG   A GP+TTGL++EVM+G R G
Sbjct:   13 PLILAAIATVASTVLPSSAPVSRSHSFPL---PVAWIKHAQQHSSVLPAPPPPSSCMSASTSTSTTMMHSWPRMLSRRRFLPAYGASGRGRRGQPYGGRGGRGGRGGLSG-RGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSG------LGAPPGK--GGARQGWARRDGGKEEQRPPS---------CGKKAAWWAQLGKFLHRGGEDG-------GGGGTGRLAFVETPGGAWGGREKGRRS-----QGPGR-WVRRGGMRGAGGPFTTGLAVEVMVGTRTG 455          
The following BLAST results are available for this feature:
BLAST of NO12G03160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25720.11.800e-13261.64rhomboid-like protein 10 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03160NO12G03160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03160.1NO12G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03160.1.cds1NO12G03160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03160.1 ID=NO12G03160.1|Name=NO12G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp
CAGGAAGGCAAACAACTTTACGCCTGCCCGCCTGCCCTCCCTCCTTGAAG
AAGACGAGACGGTCTGGACGACACGGCAGCAGGAGGAACTTCATCACCTC
GCCCTCATCAACTCATGCGGTCCGCCTTCCTTTTCCCCATCCTGGGCCCA
CTTCTCTTCCTAGCCCACCACACGATAGCCGCCCCCGCGTCCCTGTCCCT
CTCCCTCGTCCGACACCGCCACTCTTTTACTTGGTTCTCCCCGCCTTTGG
CCTGGCTCAGGCATACACAGCAGCACACCCCTCCCCCACCCTCTTCTACC
CTACACTCCAGCTCCACACCCTCATGGTTCCGCGCACACATCCTTCCGCG
CACCCGTCTCGTGCCTGCGTATGGCACCGCGGGGCGTGGCCGTCGGGGGC
AGCAGCACGGCGGCCGTGGAGGACACAGAGGACGGGGAGGGATGGGTGGT
GGCACGGGGGAAGGCGGAGTTAACCTCAATAGCTGGACGAATCGACTGTT
GGCATTGAATGTGGCTATCTTTTTTTTGCAACAGGTGAATCCGAGTATCA
CCTTGATGGGGGCGAAGAACGATAAGCTTATTCGACGGGGGGAGTTGCAC
CGCCTGTTTACCCCGATGCTGTTGCATGGAGACTTGCAGCATTTAATGGC
CAATTCTTATACCATGTACAATCTGGGGCATTTCATCGAGCCACTATTTG
GGGGGTCAAAGGCTTACTTATCCTTGTATGTCCTTTCGGGCGTGGCCGGT
AATTACTTGTCGTTTGCTTCTGGCAGGGCGCCGATCTCGATAGGAGCGTC
TACAGCGGTCTCGGGGCTGCTGGGGGCCGTGGGGTTGTTTTGTTATCGCC
ACCGGATGGTGTGGAATTTGGAGGGTCCGTTGAGGTCCGTTGCGCAAGCA
GTGGTGATCAACGGGGTGCTCGGGATGAGTAGTCCGAGGATTGACAATTT
TGGGCATTTAGGGGGGCTGGTGGGAGGGATGGTGTGTGGGTGGTTGTTCG
GACCGAGGCTGGTGCCGTTGCACACAAAGGAGGGCCAATTTAGAGGGTAC
GTGAATAGCCCAATCCTGCAGACGAGCTTGGCGGAGGCCGGGAGGAAGGT
GAGGGGGAGTTTAGGGAGGACGAAGGGAGGTAGGCAGGGAGGGCAGCTTG
GGCAACAACCGAAGCAGAGATGGGGAGGAGTGACTCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGC
GAGACATGGATGGAGTAAGAAGGTGCCAACATGGTGGCAGCGGCTGGGTA
CGTTTCTGCATCGAGGTGGGGATGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGGGGGAGGGTGGCTGGCTTATGTCGGGGCACCTGGCGGTGG
GGGGTGGGAGAGAAGGGGTCGTAGCGGGAGAGTGTTGCGAGATGGAAGAG
GAAGGGGATGGAGTAGTCAGGGAGGAAGAGGATGCGCTCAAGGACCTTAC
ACGACTGGATTGTCGCTGGAGGTGATGATGGGAGGCAGGGGGGGAGGAGT
GAGGGGTGGGTAAGAGGCGGAAAAACACAACGAGATATATAGAGAGAAGA
CTGAGTGAAAAAAAAGTGAACAGCAACACAGAAAGAAATGACAACTGTAC
TTAAGAAATAACCTATGAATTTGCCCACCAGTGAGTTCACGGGAGGAGCA
CCCCGCGTCATTAACAATCGCAGATGTAAGAAGCCCAACAAAAGAAAACC
ATACGAGAAGAGA
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protein sequence of NO12G03160.1

>NO12G03160.1-protein ID=NO12G03160.1-protein|Name=NO12G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MRSAFLFPILGPLLFLAHHTIAAPASLSLSLVRHRHSFTWFSPPLAWLRH
TQQHTPPPPSSTLHSSSTPSWFRAHILPRTRLVPAYGTAGRGRRGQQHGG
RGGHRGRGGMGGGTGEGGVNLNSWTNRLLALNVAIFFLQQVNPSITLMGA
KNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKA
YLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVW
NLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLV
PLHTKEGQFRGYVNSPILQTSLAEAGRKVRGSLGRTKGGRQGGQLGQQPK
QRWGGVTQQQQQQQQQQQQQQQQQQQQHARHGWSKKVPTWWQRLGTFLHR
GGDEGGREGGREGGRGGGWLAYVGAPGGGGWERRGRSGRVLRDGRGRGWS
SQGGRGCAQGPYTTGLSLEVMMGGRGGGVRGG*
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mRNA from alignment at chr12:871556..873318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03160.1 ID=NO12G03160.1|Name=NO12G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp|location=Sequence derived from alignment at chr12:871556..873318- (Nannochloropsis oceanica)
CAGGAAGGCAAACAACTTTACGCCTGCCCGCCTGCCCTCCCTCCTTGAAG AAGACGAGACGGTCTGGACGACACGGCAGCAGGAGGAACTTCATCACCTC GCCCTCATCAACTCATGCGGTCCGCCTTCCTTTTCCCCATCCTGGGCCCA CTTCTCTTCCTAGCCCACCACACGATAGCCGCCCCCGCGTCCCTGTCCCT CTCCCTCGTCCGACACCGCCACTCTTTTACTTGGTTCTCCCCGCCTTTGG CCTGGCTCAGGCATACACAGCAGCACACCCCTCCCCCACCCTCTTCTACC CTACACTCCAGCTCCACACCCTCATGGTTCCGCGCACACATCCTTCCGCG CACCCGTCTCGTGCCTGCGTATGGCACCGCGGGGCGTGGCCGTCGGGGGC AGCAGCACGGCGGCCGTGGAGGACACAGAGGACGGGGAGGGATGGGTGGT GGCACGGGGGAAGGCGGAGTTAACCTCAATAGCTGGACGAATCGACTGTT GGCATTGAATGTGGCTATCTTTTTTTTGCAACAGGTGAATCCGAGTATCA CCTTGATGGGGGCGAAGAACGATAAGCTTATTCGACGGGGGGAGTTGCAC CGCCTGTTTACCCCGATGCTGTTGCATGGAGACTTGCAGCATTTAATGGC CAATTCTTATACCATGTACAATCTGGGGCATTTCATCGAGCCACTATTTG GGGGGTCAAAGGCTTACTTATCCTTGTATGTCCTTTCGGGCGTGGCCGGT AATTACTTGTCGTTTGCTTCTGGCAGGGCGCCGATCTCGATAGGAGCGTC TACAGCGGTCTCGGGGCTGCTGGGGGCCGTGGGGTTGTTTTGTTATCGCC ACCGGATGGTGTGGAATTTGGAGGGTCCGTTGAGGTCCGTTGCGCAAGCA GTGGTGATCAACGGGGTGCTCGGGATGAGTAGTCCGAGGATTGACAATTT TGGGCATTTAGGGGGGCTGGTGGGAGGGATGGTGTGTGGGTGGTTGTTCG GACCGAGGCTGGTGCCGTTGCACACAAAGGAGGGCCAATTTAGAGGGTAC GTGAATAGCCCAATCCTGCAGACGAGCTTGGCGGAGGCCGGGAGGAAGGT GAGGGGGAGTTTAGGGAGGACGAAGGGAGGTAGGCAGGGAGGGCAGCTTG GGCAACAACCGAAGCAGAGATGGGGAGGAGTGACTCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGC GAGACATGGATGGAGTAAGAAGGTGCCAACATGGTGGCAGCGGCTGGGTA CGTTTCTGCATCGAGGTGGGGATGAGGGAGGGAGGGAGGGAGGGAGGGAG GGAGGGAGGGGGGGAGGGTGGCTGGCTTATGTCGGGGCACCTGGCGGTGG GGGGTGGGAGAGAAGGGGTCGTAGCGGGAGAGTGTTGCGAGATGGAAGAG GAAGGGGATGGAGTAGTCAGGGAGGAAGAGGATGCGCTCAAGGACCTTAC ACGACTGGATTGTCGCTGGAGGTGATGATGGGAGGCAGGGGGGGAGGAGT GAGGGGTGGGTAAGAGGCGGAAAAACACAACGAGATATATAGAGAGAAGA CTGAGTGAAAAAAAAGTGAACAGCAACACAGAAAGAAATGACAACTGTAC TTAAGAAATAACCTATGAATTTGCCCACCAGTGAGTTCACGGGAGGAGCA CCCCGCGTCATTAACAATCGCAGATGTAAGAAGCCCAACAAAAGAAAACC ATACGAGAAGAGA
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Coding sequence (CDS) from alignment at chr12:871556..873318-

>NO12G03160.1 ID=NO12G03160.1|Name=NO12G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at chr12:871556..873318- (Nannochloropsis oceanica)
ATGCGGTCCGCCTTCCTTTTCCCCATCCTGGGCCCACTTCTCTTCCTAGC
CCACCACACGATAGCCGCCCCCGCGTCCCTGTCCCTCTCCCTCGTCCGAC
ACCGCCACTCTTTTACTTGGTTCTCCCCGCCTTTGGCCTGGCTCAGGCAT
ACACAGCAGCACACCCCTCCCCCACCCTCTTCTACCCTACACTCCAGCTC
CACACCCTCATGGTTCCGCGCACACATCCTTCCGCGCACCCGTCTCGTGC
CTGCGTATGGCACCGCGGGGCGTGGCCGTCGGGGGCAGCAGCACGGCGGC
CGTGGAGGACACAGAGGACGGGGAGGGATGGGTGGTGGCACGGGGGAAGG
CGGAGTTAACCTCAATAGCTGGACGAATCGACTGTTGGCATTGAATGTGG
CTATCTTTTTTTTGCAACAGGTGAATCCGAGTATCACCTTGATGGGGGCG
AAGAACGATAAGCTTATTCGACGGGGGGAGTTGCACCGCCTGTTTACCCC
GATGCTGTTGCATGGAGACTTGCAGCATTTAATGGCCAATTCTTATACCA
TGTACAATCTGGGGCATTTCATCGAGCCACTATTTGGGGGGTCAAAGGCT
TACTTATCCTTGTATGTCCTTTCGGGCGTGGCCGGTAATTACTTGTCGTT
TGCTTCTGGCAGGGCGCCGATCTCGATAGGAGCGTCTACAGCGGTCTCGG
GGCTGCTGGGGGCCGTGGGGTTGTTTTGTTATCGCCACCGGATGGTGTGG
AATTTGGAGGGTCCGTTGAGGTCCGTTGCGCAAGCAGTGGTGATCAACGG
GGTGCTCGGGATGAGTAGTCCGAGGATTGACAATTTTGGGCATTTAGGGG
GGCTGGTGGGAGGGATGGTGTGTGGGTGGTTGTTCGGACCGAGGCTGGTG
CCGTTGCACACAAAGGAGGGCCAATTTAGAGGGTACGTGAATAGCCCAAT
CCTGCAGACGAGCTTGGCGGAGGCCGGGAGGAAGGTGAGGGGGAGTTTAG
GGAGGACGAAGGGAGGTAGGCAGGGAGGGCAGCTTGGGCAACAACCGAAG
CAGAGATGGGGAGGAGTGACTCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGCGAGACATGGATGGA
GTAAGAAGGTGCCAACATGGTGGCAGCGGCTGGGTACGTTTCTGCATCGA
GGTGGGGATGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGG
AGGGTGGCTGGCTTATGTCGGGGCACCTGGCGGTGGGGGGTGGGAGAGAA
GGGGTCGTAGCGGGAGAGTGTTGCGAGATGGAAGAGGAAGGGGATGGAGT
AGTCAGGGAGGAAGAGGATGCGCTCAAGGACCTTACACGACTGGATTGTC
GCTGGAGGTGATGATGGGAGGCAGGGGGGGAGGAGTGAGGGGTGGGTAA
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Synonyms
Publications