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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:871556..873318 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03160.1 vs.
Match: EWM25720.1 (rhomboid-like protein 10 [Nannochloropsis gaditana]) HSP 1 Score: 482.3 bits (1240), Expect = 1.800e-132 Identity = 294/477 (61.64%), Postives = 342/477 (71.70%), Query Frame = 0
Query: 12 PLLFLAHHTIAAPASLSLSLVRHRHSFTWFSPPLAWLRHTQQHT-----PPPPSSTLHSSSTPSWFRAH----ILPRTRLVPAYGTAGRGRRGQQHGGRGGHRGRGGMGGGTGEGGVNLNSWTNRLLALNVAIFFLQQVNPSITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNSPILQTSLAEAGRKVRGSLGRTKGGRQGGQLGQQPKQRWGGVTQQQQQQQQQQQQQQQQQQQQHARHGWSKKVPTWWQRLGTFLHRGGDEGGREGGREGGRGGGWLAYVGAPGG--GGWERRGRSGRVLRDGRGRGWSSQGGRGCAQGPYTTGLSLEVMMGGRGG 478
PL+ A T+A+ S + V HSF P+AW++H QQH+ PPPPSS + +S++ S H +L R R +PAYG +GRGRRGQ +GGRGG GRGG+ G GEGG++L++WTNRLLALNVAIF QQV+PSITLMGAKND+LIRRGEL+RLFTPMLLHGD+QHLMANSYTMYNLGHFIEPLFGG YL+LY+LSG+AGN LSF SGRAP+SIGASTAVSGLLGAVGLFCYRHR VWNLEGPLRSVAQAVVINGVLGMSS RIDNFGHLGGLVGG VCGWLFGPRLVPL T+EG FRGYVNSPILQT A GR+VRG LGR G LG P + GG Q ++ +++Q+ K WW +LG FLHRGG++G GG G G LA+V PGG GG E+ RS G GR W +GG A GP+TTGL++EVM+G R G
Sbjct: 13 PLILAAIATVASTVLPSSAPVSRSHSFPL---PVAWIKHAQQHSSVLPAPPPPSSCMSASTSTSTTMMHSWPRMLSRRRFLPAYGASGRGRRGQPYGGRGGRGGRGGLSG-RGEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSG------LGAPPGK--GGARQGWARRDGGKEEQRPPS---------CGKKAAWWAQLGKFLHRGGEDG-------GGGGTGRLAFVETPGGAWGGREKGRRS-----QGPGR-WVRRGGMRGAGGPFTTGLAVEVMVGTRTG 455
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G03160.1 ID=NO12G03160.1|Name=NO12G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp CAGGAAGGCAAACAACTTTACGCCTGCCCGCCTGCCCTCCCTCCTTGAAG AAGACGAGACGGTCTGGACGACACGGCAGCAGGAGGAACTTCATCACCTC GCCCTCATCAACTCATGCGGTCCGCCTTCCTTTTCCCCATCCTGGGCCCA CTTCTCTTCCTAGCCCACCACACGATAGCCGCCCCCGCGTCCCTGTCCCT CTCCCTCGTCCGACACCGCCACTCTTTTACTTGGTTCTCCCCGCCTTTGG CCTGGCTCAGGCATACACAGCAGCACACCCCTCCCCCACCCTCTTCTACC CTACACTCCAGCTCCACACCCTCATGGTTCCGCGCACACATCCTTCCGCG CACCCGTCTCGTGCCTGCGTATGGCACCGCGGGGCGTGGCCGTCGGGGGC AGCAGCACGGCGGCCGTGGAGGACACAGAGGACGGGGAGGGATGGGTGGT GGCACGGGGGAAGGCGGAGTTAACCTCAATAGCTGGACGAATCGACTGTT GGCATTGAATGTGGCTATCTTTTTTTTGCAACAGGTGAATCCGAGTATCA CCTTGATGGGGGCGAAGAACGATAAGCTTATTCGACGGGGGGAGTTGCAC CGCCTGTTTACCCCGATGCTGTTGCATGGAGACTTGCAGCATTTAATGGC CAATTCTTATACCATGTACAATCTGGGGCATTTCATCGAGCCACTATTTG GGGGGTCAAAGGCTTACTTATCCTTGTATGTCCTTTCGGGCGTGGCCGGT AATTACTTGTCGTTTGCTTCTGGCAGGGCGCCGATCTCGATAGGAGCGTC TACAGCGGTCTCGGGGCTGCTGGGGGCCGTGGGGTTGTTTTGTTATCGCC ACCGGATGGTGTGGAATTTGGAGGGTCCGTTGAGGTCCGTTGCGCAAGCA GTGGTGATCAACGGGGTGCTCGGGATGAGTAGTCCGAGGATTGACAATTT TGGGCATTTAGGGGGGCTGGTGGGAGGGATGGTGTGTGGGTGGTTGTTCG GACCGAGGCTGGTGCCGTTGCACACAAAGGAGGGCCAATTTAGAGGGTAC GTGAATAGCCCAATCCTGCAGACGAGCTTGGCGGAGGCCGGGAGGAAGGT GAGGGGGAGTTTAGGGAGGACGAAGGGAGGTAGGCAGGGAGGGCAGCTTG GGCAACAACCGAAGCAGAGATGGGGAGGAGTGACTCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGC GAGACATGGATGGAGTAAGAAGGTGCCAACATGGTGGCAGCGGCTGGGTA CGTTTCTGCATCGAGGTGGGGATGAGGGAGGGAGGGAGGGAGGGAGGGAG GGAGGGAGGGGGGGAGGGTGGCTGGCTTATGTCGGGGCACCTGGCGGTGG GGGGTGGGAGAGAAGGGGTCGTAGCGGGAGAGTGTTGCGAGATGGAAGAG GAAGGGGATGGAGTAGTCAGGGAGGAAGAGGATGCGCTCAAGGACCTTAC ACGACTGGATTGTCGCTGGAGGTGATGATGGGAGGCAGGGGGGGAGGAGT GAGGGGTGGGTAAGAGGCGGAAAAACACAACGAGATATATAGAGAGAAGA CTGAGTGAAAAAAAAGTGAACAGCAACACAGAAAGAAATGACAACTGTAC TTAAGAAATAACCTATGAATTTGCCCACCAGTGAGTTCACGGGAGGAGCA CCCCGCGTCATTAACAATCGCAGATGTAAGAAGCCCAACAAAAGAAAACC ATACGAGAAGAGA back to topprotein sequence of NO12G03160.1 >NO12G03160.1-protein ID=NO12G03160.1-protein|Name=NO12G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp MRSAFLFPILGPLLFLAHHTIAAPASLSLSLVRHRHSFTWFSPPLAWLRH TQQHTPPPPSSTLHSSSTPSWFRAHILPRTRLVPAYGTAGRGRRGQQHGG RGGHRGRGGMGGGTGEGGVNLNSWTNRLLALNVAIFFLQQVNPSITLMGA KNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKA YLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVW NLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLV PLHTKEGQFRGYVNSPILQTSLAEAGRKVRGSLGRTKGGRQGGQLGQQPK QRWGGVTQQQQQQQQQQQQQQQQQQQQHARHGWSKKVPTWWQRLGTFLHR GGDEGGREGGREGGRGGGWLAYVGAPGGGGWERRGRSGRVLRDGRGRGWS SQGGRGCAQGPYTTGLSLEVMMGGRGGGVRGG* back to topmRNA from alignment at chr12:871556..873318- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G03160.1 ID=NO12G03160.1|Name=NO12G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp|location=Sequence derived from alignment at chr12:871556..873318- (Nannochloropsis oceanica) CAGGAAGGCAAACAACTTTACGCCTGCCCGCCTGCCCTCCCTCCTTGAAG
AAGACGAGACGGTCTGGACGACACGGCAGCAGGAGGAACTTCATCACCTC
GCCCTCATCAACTCATGCGGTCCGCCTTCCTTTTCCCCATCCTGGGCCCA
CTTCTCTTCCTAGCCCACCACACGATAGCCGCCCCCGCGTCCCTGTCCCT
CTCCCTCGTCCGACACCGCCACTCTTTTACTTGGTTCTCCCCGCCTTTGG
CCTGGCTCAGGCATACACAGCAGCACACCCCTCCCCCACCCTCTTCTACC
CTACACTCCAGCTCCACACCCTCATGGTTCCGCGCACACATCCTTCCGCG
CACCCGTCTCGTGCCTGCGTATGGCACCGCGGGGCGTGGCCGTCGGGGGC
AGCAGCACGGCGGCCGTGGAGGACACAGAGGACGGGGAGGGATGGGTGGT
GGCACGGGGGAAGGCGGAGTTAACCTCAATAGCTGGACGAATCGACTGTT
GGCATTGAATGTGGCTATCTTTTTTTTGCAACAGGTGAATCCGAGTATCA
CCTTGATGGGGGCGAAGAACGATAAGCTTATTCGACGGGGGGAGTTGCAC
CGCCTGTTTACCCCGATGCTGTTGCATGGAGACTTGCAGCATTTAATGGC
CAATTCTTATACCATGTACAATCTGGGGCATTTCATCGAGCCACTATTTG
GGGGGTCAAAGGCTTACTTATCCTTGTATGTCCTTTCGGGCGTGGCCGGT
AATTACTTGTCGTTTGCTTCTGGCAGGGCGCCGATCTCGATAGGAGCGTC
TACAGCGGTCTCGGGGCTGCTGGGGGCCGTGGGGTTGTTTTGTTATCGCC
ACCGGATGGTGTGGAATTTGGAGGGTCCGTTGAGGTCCGTTGCGCAAGCA
GTGGTGATCAACGGGGTGCTCGGGATGAGTAGTCCGAGGATTGACAATTT
TGGGCATTTAGGGGGGCTGGTGGGAGGGATGGTGTGTGGGTGGTTGTTCG
GACCGAGGCTGGTGCCGTTGCACACAAAGGAGGGCCAATTTAGAGGGTAC
GTGAATAGCCCAATCCTGCAGACGAGCTTGGCGGAGGCCGGGAGGAAGGT
GAGGGGGAGTTTAGGGAGGACGAAGGGAGGTAGGCAGGGAGGGCAGCTTG
GGCAACAACCGAAGCAGAGATGGGGAGGAGTGACTCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGC
GAGACATGGATGGAGTAAGAAGGTGCCAACATGGTGGCAGCGGCTGGGTA
CGTTTCTGCATCGAGGTGGGGATGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGGGGGAGGGTGGCTGGCTTATGTCGGGGCACCTGGCGGTGG
GGGGTGGGAGAGAAGGGGTCGTAGCGGGAGAGTGTTGCGAGATGGAAGAG
GAAGGGGATGGAGTAGTCAGGGAGGAAGAGGATGCGCTCAAGGACCTTAC
ACGACTGGATTGTCGCTGGAGGTGATGATGGGAGGCAGGGGGGGAGGAGT
GAGGGGTGGGTAAGAGGCGGAAAAACACAACGAGATATATAGAGAGAAGA
CTGAGTGAAAAAAAAGTGAACAGCAACACAGAAAGAAATGACAACTGTAC
TTAAGAAATAACCTATGAATTTGCCCACCAGTGAGTTCACGGGAGGAGCA
CCCCGCGTCATTAACAATCGCAGATGTAAGAAGCCCAACAAAAGAAAACC
ATACGAGAAGAGA back to topCoding sequence (CDS) from alignment at chr12:871556..873318- >NO12G03160.1 ID=NO12G03160.1|Name=NO12G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at chr12:871556..873318- (Nannochloropsis oceanica) ATGCGGTCCGCCTTCCTTTTCCCCATCCTGGGCCCACTTCTCTTCCTAGC CCACCACACGATAGCCGCCCCCGCGTCCCTGTCCCTCTCCCTCGTCCGAC ACCGCCACTCTTTTACTTGGTTCTCCCCGCCTTTGGCCTGGCTCAGGCAT ACACAGCAGCACACCCCTCCCCCACCCTCTTCTACCCTACACTCCAGCTC CACACCCTCATGGTTCCGCGCACACATCCTTCCGCGCACCCGTCTCGTGC CTGCGTATGGCACCGCGGGGCGTGGCCGTCGGGGGCAGCAGCACGGCGGC CGTGGAGGACACAGAGGACGGGGAGGGATGGGTGGTGGCACGGGGGAAGG CGGAGTTAACCTCAATAGCTGGACGAATCGACTGTTGGCATTGAATGTGG CTATCTTTTTTTTGCAACAGGTGAATCCGAGTATCACCTTGATGGGGGCG AAGAACGATAAGCTTATTCGACGGGGGGAGTTGCACCGCCTGTTTACCCC GATGCTGTTGCATGGAGACTTGCAGCATTTAATGGCCAATTCTTATACCA TGTACAATCTGGGGCATTTCATCGAGCCACTATTTGGGGGGTCAAAGGCT TACTTATCCTTGTATGTCCTTTCGGGCGTGGCCGGTAATTACTTGTCGTT TGCTTCTGGCAGGGCGCCGATCTCGATAGGAGCGTCTACAGCGGTCTCGG GGCTGCTGGGGGCCGTGGGGTTGTTTTGTTATCGCCACCGGATGGTGTGG AATTTGGAGGGTCCGTTGAGGTCCGTTGCGCAAGCAGTGGTGATCAACGG GGTGCTCGGGATGAGTAGTCCGAGGATTGACAATTTTGGGCATTTAGGGG GGCTGGTGGGAGGGATGGTGTGTGGGTGGTTGTTCGGACCGAGGCTGGTG CCGTTGCACACAAAGGAGGGCCAATTTAGAGGGTACGTGAATAGCCCAAT CCTGCAGACGAGCTTGGCGGAGGCCGGGAGGAAGGTGAGGGGGAGTTTAG GGAGGACGAAGGGAGGTAGGCAGGGAGGGCAGCTTGGGCAACAACCGAAG CAGAGATGGGGAGGAGTGACTCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGCGAGACATGGATGGA GTAAGAAGGTGCCAACATGGTGGCAGCGGCTGGGTACGTTTCTGCATCGA GGTGGGGATGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGG AGGGTGGCTGGCTTATGTCGGGGCACCTGGCGGTGGGGGGTGGGAGAGAA GGGGTCGTAGCGGGAGAGTGTTGCGAGATGGAAGAGGAAGGGGATGGAGT AGTCAGGGAGGAAGAGGATGCGCTCAAGGACCTTACACGACTGGATTGTC GCTGGAGGTGATGATGGGAGGCAGGGGGGGAGGAGTGAGGGGTGGGTAA back to top
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