NO12G03010, NO12G03010 (gene) Nannochloropsis oceanica

Overview
NameNO12G03010
Unique NameNO12G03010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1953
Alignment locationchr12:827582..829534 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:827582..829534 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G03010 vs. NCBI_GenBank
Match: EWM25731.1 (hypothetical protein Naga_100087g15 [Nannochloropsis gaditana])

HSP 1 Score: 262.7 bits (670), Expect = 3.000e-66
Identity = 147/267 (55.06%), Postives = 187/267 (70.04%), Query Frame = 0 
Query:    1 MCATAQYRNSPLDLQSLSMAKSAPMVASRTQALIDRSEILAHGGRAFVENVKTMAASGMLDRQKMIHWVRIVSLFNKATGKDTSHGLIDMIHNLLSDMRLTHE--ERLQQQEEEQCRGDSRAH-----------ATDFKHPELDELACYIVSRGGHGAETMFCSEAMKQLFISTDELTMTVQETGLTSLSVWATFTTREGLATLNRAASTVFLQKGTEHVEVEVECLTRTGLLVVCAATVSFRVFGNGKSTLILTLTVKQDAPPRAV 255
            MCA     +  + L     +K  P VASRTQ LI + E LA GGRAFV+ ++ MA+ G+LDR+KM+ +VRIVSLFN+ATGKDTSHGL+D++++LL+ M    +    L Q E     G                ++    PELD+LACYI+SRGG GAE++FCSEAMKQLFISTDELT T++ETGLTS+SVWA+FTT EGLATL+RAA+ V LQ+ T  VEV+VEC+TRT LLV C  T++F V   G+S+L+L L VKQDA PRAV
Sbjct:    2 MCAPNSLGSKMVGLPGTIGSKGTPSVASRTQTLIGQCENLAQGGRAFVQQIQKMASMGLLDRRKMVDYVRIVSLFNQATGKDTSHGLLDLVYHLLTCMSAGEDGGSSLSQIELLHTIGGGIGEIGGKGVRAVPGSSAATPPELDDLACYIISRGGTGAESVFCSEAMKQLFISTDELTCTLKETGLTSVSVWASFTTPEGLATLHRAAAAVLLQRDTSQVEVQVECVTRTDLLVACTGTLTFHVSEKGESSLVLCLAVKQDASPRAV 268
The following BLAST results are available for this feature:
BLAST of NO12G03010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25731.13.000e-6655.06hypothetical protein Naga_100087g15 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010247NSK010247Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03010.1NO12G03010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100087g15gene4777Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03010.1NO12G03010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03010 ID=NO12G03010|Name=NO12G03010|organism=Nannochloropsis oceanica|type=gene|length=1953bp
ATGTGTGCAACGGCCCAGTATCGAAATTCTCCACTGGACCTGCAGAGCTT
GTCCATGGCCAAGTCCGCTCCCATGGTGGCTTCCCGCACTCAGGCCCTCA
TCGACCGAAGCGAAATTTTGGCACACGGTGGCCGCGCCTTTGTGGAGAAC
GTGAAAACGATGGCAGCTTCAGGCATGCTGGACCGGCAAAAGATGATACA
CTGGGTGAGAATTGTCTCCCTCTTTAACAAGGCCACTGGCAAGGACACAT
CCCACGGGCTTATTGACATGATCCACAACCTCTTGTCTGACATGCGCTTG
ACCCACGAGGAGCGGCTGCAGCAGCAGGAAGAGGAGCAATGCAGAGGTGA
TAGCCGTGCTCATGCAACCGACTTCAAACATCCTGAGCTGGACGAGCTTG
CCTGCTACATAGTTTCTCGCGGGGGACACGGTGCGGAGACCATGTTCTGC
AGTGAGGCGATGAAGCAGCTCTTCATTTCCACCGACGAGCTAACGATGAC
CGTACAAGAAACGGGACTCACCTCTTTATCTGTTTGGGCCACCTTCACAA
CGCGTGAGGGACTGGCGACGCTGAATCGGGCGGCATCTACAGTTTTCTTG
CAAAAGGGCACAGAGCATGTGGAGGTGGAAGTGGAGTGTCTGACCAGGAC
AGGCTTGCTTGTCGTATGTGCGGCCACTGTCAGTTTCCGTGTGTTTGGGA
ATGGAAAGAGCACCTTGATCCTCACCCTAACTGTCAAGCAAGATGCACCT
CCTCGTGCCGTCACCTCCTCCTTTGCCTCCCGAAAGCACACGGTGTCAGA
GAATGGAGCAGCAGAAAGGGAAGCAGGGATATCGTCTAGTACGCGGCGCA
CCACCTACTCTTCGGAACGTCTGGCTGCATTGGCCAGCAAGAGGAAGTAC
GGGGAGGAGCAGAAGCACCGACAGCTGGTGCAACAGCAGCAACAGGAAGG
GCGAAGGCGCCGTCCCCGCCCGCTAGACGAGACACCGCCTTCCTCCACCA
CCACCTCCATCTCTCCCTCCCCTTCAACCGCCTCCTTCTCTTCCTTAACC
TCCACCTCAACTTTGTCTTCTTCTTCCTCTCTTCCCCCTTCCTCCATCCC
CTCTTCTCCTTTCCTCCCTTCCTCTCGCCCCCCCCCCCAACGCATCGCTG
TGTCAAGCAAGCGTCGGAAAATTCCCTCGACTGTGGCCTGGAGCCAAGAA
GGCCCTCCTGTCCCTGAAGCGATTAGTCGTCGCCTCGCCACTTGTTCTAC
AAATCCCCCCTTTATGACTGGACGTGGGGTTTCATATGATAAGGAGGATA
AAGTATTCGCCTTTGCAGCCATCCCCGAACAGCAACAGCAGTTGCAGCAG
CAGCAACAGCAGCAGTTGCAGGTTGGGTTGTGGGACGGGGAGGAAAAAGA
GCACAATCATTTGCAACGATGGGTTTTTTTACAACAGGAACAGAAGCAGC
TGCCACATGAGCAACCTCAGCAGGAACCACAACAGCAGCAGCAGCAGCAG
GTGGCGTTGGCCCCTGCTTGTCTTCTTCCTTCGGCGTTTTCGGCGCTTGT
CTCCTTGCCCGGAGTGCCCTCACCTCACATTTTTGTCGGAAACAGCAACG
AGGACAATAGCAGCAGCGGTGACGGGAGCACAGAACATGAAGATGAGGAG
GTGCATCAGGAGCAAATGCTGCAGCCGCAACCGCAGCCGCAGCCGCCGCC
GCCGCCGCCGCAGCAAGTGCCGGAACTGAAGATGGATGCGAATGAGGATC
ACGTGTGGGCATGGGCCAATGCGATTTGGGAGGAAGCTGATGGCGCGCTA
CAGCCACCTCTTGATCTGGGTGCTGGGACGGAAGCAGGGTTGATAGCAGT
TGATGAGATAGGAGGAGGGATGGAGGGAGGGGCGGAGGAAGTAATGATGG
GAAGTGTGGAGGATCCGGATTTGTGGCTGATGCTTGAGCAGCAGGGGCTA
TAG
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protein sequence of NO12G03010.1

>NO12G03010.1-protein ID=NO12G03010.1-protein|Name=NO12G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MCATAQYRNSPLDLQSLSMAKSAPMVASRTQALIDRSEILAHGGRAFVEN
VKTMAASGMLDRQKMIHWVRIVSLFNKATGKDTSHGLIDMIHNLLSDMRL
THEERLQQQEEEQCRGDSRAHATDFKHPELDELACYIVSRGGHGAETMFC
SEAMKQLFISTDELTMTVQETGLTSLSVWATFTTREGLATLNRAASTVFL
QKGTEHVEVEVECLTRTGLLVVCAATVSFRVFGNGKSTLILTLTVKQDAP
PRAVTSSFASRKHTVSENGAAEREAGISSSTRRTTYSSERLAALASKRKY
GEEQKHRQLVQQQQQEGRRRRPRPLDETPPSSTTTSISPSPSTASFSSLT
STSTLSSSSSLPPSSIPSSPFLPSSRPPPQRIAVSSKRRKIPSTVAWSQE
GPPVPEAISRRLATCSTNPPFMTGRGVSYDKEDKVFAFAAIPEQQQQLQQ
QQQQQLQVGLWDGEEKEHNHLQRWVFLQQEQKQLPHEQPQQEPQQQQQQQ
VALAPACLLPSAFSALVSLPGVPSPHIFVGNSNEDNSSSGDGSTEHEDEE
VHQEQMLQPQPQPQPPPPPPQQVPELKMDANEDHVWAWANAIWEEADGAL
QPPLDLGAGTEAGLIAVDEIGGGMEGGAEEVMMGSVEDPDLWLMLEQQGL
*
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Synonyms
Publications