NO12G02900, NO12G02900 (gene) Nannochloropsis oceanica

Overview
NameNO12G02900
Unique NameNO12G02900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length408
Alignment locationchr12:804270..804677 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:804270..804677 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G02900 vs. NCBI_GenBank
Match: EWM29590.1 (hypothetical protein Naga_100006g38 [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 7.100e-10
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 0 
Query:   34 QFQGPTVDGLPLDYCLHYELAHYGPDNSLTAKHGHDCGKPAADEFCIRQGYKEGSEWFSVMYYSRGATYVLGDEAVNPTD-TNMGKGEHTYIDRLTCK 131
            +F  P   GLP+DYCL Y+      +     + G DCG PAA ++C  QG  +  + + V YYS  AT  LGD AV+  D T  GKG HT+   +TC+
Sbjct:   99 RFIMPKFRGLPVDYCLRYQHGSVRRE-----RRGIDCGVPAASQYCRDQGMDDSID-YVVTYYSSQATSTLGDGAVHAADPTGDGKGRHTWFTSITCR 190
The following BLAST results are available for this feature:
BLAST of NO12G02900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29590.17.100e-1040.82hypothetical protein Naga_100006g38 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010235NSK010235Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02900.1NO12G02900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592591gene_5462Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02900.1NO12G02900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02900 ID=NO12G02900|Name=NO12G02900|organism=Nannochloropsis oceanica|type=gene|length=408bp
ATGGCATATCGCACATTCCACTTTCTACTTGTCGGCTTGGCCGTCGTGGG
CAGCAGCTTGGATTCGTCGTCTCTGCACTTGTCTTTCCGCAAGCTCAGCC
AATTCCAAGGCCCGACCGTTGATGGGCTACCTCTCGATTATTGCCTTCAT
TACGAGCTCGCGCATTACGGCCCAGACAATTCTTTGACTGCAAAGCATGG
GCACGATTGTGGGAAGCCCGCCGCGGACGAGTTTTGTATAAGACAAGGAT
ACAAGGAAGGGAGTGAGTGGTTTTCGGTTATGTACTATTCAAGGGGTGCG
ACCTACGTCTTGGGAGATGAGGCTGTGAACCCCACGGACACGAACATGGG
AAAAGGAGAGCATACGTACATTGATAGGTTGACATGCAAGGAGAAGAAGG
AAAGGTAA
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protein sequence of NO12G02900.1

>NO12G02900.1-protein ID=NO12G02900.1-protein|Name=NO12G02900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MAYRTFHFLLVGLAVVGSSLDSSSLHLSFRKLSQFQGPTVDGLPLDYCLH
YELAHYGPDNSLTAKHGHDCGKPAADEFCIRQGYKEGSEWFSVMYYSRGA
TYVLGDEAVNPTDTNMGKGEHTYIDRLTCKEKKER*
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Synonyms
Publications