NO12G02870, NO12G02870 (gene) Nannochloropsis oceanica

Overview
NameNO12G02870
Unique NameNO12G02870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length901
Alignment locationchr12:798426..799326 +

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Properties
Property NameValue
Description30s ribosomal protein s15
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:798426..799326 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR009068S15_NS1_RNA-bd
IPR005290Ribosomal_S15_bac-type
IPR000589Ribosomal_S15
Homology
BLAST of NO12G02870 vs. NCBI_GenBank
Match: EWM25760.1 (30s ribosomal protein s15 [Nannochloropsis gaditana])

HSP 1 Score: 217.2 bits (552), Expect = 3.700e-53
Identity = 116/166 (69.88%), Postives = 132/166 (79.52%), Query Frame = 0
Query:    1 MWRQRLLYSVRLSSPSSLPPPASPTCRPLSSSAAPSDSFSSIA-TPLYKYLTPASLLQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNLTGFT 166
            MWRQ+L    RL S S       PT R L+SSAA S+  S  + +P YKYL P SLLQ  P PV+RAL+I+NADAPERKQAEKQ  IEKFGVRPGDTGSTSVQVACLT+RI+H+KDHC  N+QDKAARRGYT+LLTRRR LM+YLRRKDF +YQ+VIKEL LTGFT
Sbjct:    1 MWRQQLASLARLPSSSISSCKNGPTNRLLASSAASSEPLSPPSKSPSYKYLIPGSLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGLTGFT 166          
BLAST of NO12G02870 vs. NCBI_GenBank
Match: GAX14436.1 (small subunit ribosomal protein S15 [Fistulifera solaris])

HSP 1 Score: 92.4 bits (228), Expect = 1.400e-15
Identity = 43/101 (42.57%), Postives = 70/101 (69.31%), Query Frame = 0
Query:   61 EPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162
            E V++  ++ NA   ER +++KQ  ++ F  RPGDTGS++VQ+A L+ RIQ ++ H   +++DK ++RG  +L +RRR ++ YL RKDF +Y+ V+K L L
Sbjct:  140 ERVQKLFDLQNASQMERIKSQKQKVMQIFQYRPGDTGSSAVQIAALSTRIQQMQAHMTKHKKDKHSKRGMEALFSRRRKMLDYLERKDFESYRRVVKALGL 240          
BLAST of NO12G02870 vs. NCBI_GenBank
Match: GAX09910.1 (small subunit ribosomal protein S15 [Fistulifera solaris])

HSP 1 Score: 92.4 bits (228), Expect = 1.400e-15
Identity = 43/101 (42.57%), Postives = 70/101 (69.31%), Query Frame = 0
Query:   61 EPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162
            E V++  ++ NA   ER +++KQ  ++ F  RPGDTGS++VQ+A L+ RIQ ++ H   +++DK ++RG  +L +RRR ++ YL RKDF +Y+ V+K L L
Sbjct:  139 ERVQKLFDLQNASQMERIKSQKQKVMQIFQYRPGDTGSSAVQIAALSTRIQQMQAHMTKHKKDKHSKRGMEALFSRRRKMLDYLERKDFESYRRVVKALGL 239          
BLAST of NO12G02870 vs. NCBI_GenBank
Match: XP_008611129.1 (hypothetical protein SDRG_07090 [Saprolegnia diclina VS20] >EQC35379.1 hypothetical protein SDRG_07090 [Saprolegnia diclina VS20])

HSP 1 Score: 90.5 bits (223), Expect = 5.300e-15
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 0
Query:   56 LQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162
            ++  P+ V R LN+DNA   E  Q + Q  IE F   PGDTGST VQVA LT +I+ + +H   +++D  +RRG  S+++RR+ L++YLRR++   Y+ V+  L L
Sbjct:   55 IRDAPDAVHRMLNLDNASQAEINQLKTQKAIEAFQRFPGDTGSTEVQVAVLTQKIKRMTEHFKDHKKDNHSRRGLQSMISRRKKLLEYLRRENLQQYRAVVAALGL 160          
BLAST of NO12G02870 vs. NCBI_GenBank
Match: XP_012210459.1 (hypothetical protein SPRG_15875 [Saprolegnia parasitica CBS 223.65] >KDO18824.1 hypothetical protein SPRG_15875 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 89.7 bits (221), Expect = 9.000e-15
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 0
Query:   56 LQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162
            ++  P+ V R LN+DNA   E  Q + Q  IE F   PGDTGST VQVA LT +I+ + +H   +++D  +RRG  S+++RR+ L++YLRR++   Y+ V+  L L
Sbjct:   55 IRDAPDAVHRMLNLDNASQAEINQLKIQKAIEAFQRFPGDTGSTEVQVAVLTQKIKRMTEHFKDHKKDNHSRRGLQSMISRRKKLLEYLRRENLQQYRAVVAALGL 160          
BLAST of NO12G02870 vs. NCBI_GenBank
Match: OQR92631.1 (hypothetical protein ACHHYP_03473 [Achlya hypogyna])

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-13
Identity = 43/108 (39.81%), Postives = 69/108 (63.89%), Query Frame = 0
Query:   54 SLLQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162
            S ++  P+ V R L++DNA   E  + + Q  IE F   PGDTGST VQVA LT +I+ + +H   +++D  +RRG  ++++RR+ L++YLRR++   Y+ V+  L L
Sbjct:   54 SQIRDAPDAVHRMLSLDNASQEEINKIKIQKAIEAFQRFPGDTGSTEVQVAVLTQKIKRMTEHFKDHKKDNHSRRGLQTMISRRKKLLEYLRRENLQQYRAVVAALGL 161          
BLAST of NO12G02870 vs. NCBI_GenBank
Match: EJK65565.1 (hypothetical protein THAOC_13560 [Thalassiosira oceanica])

HSP 1 Score: 83.6 bits (205), Expect = 6.400e-13
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 0
Query:   63 VERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162
            V+R  ++ N    E  +++KQ G+E F +R GDTGS++VQV  LT RIQ ++ H A +R+D +++RG   +  RRR L+ Y+ RK    Y+ V+K L L
Sbjct:  140 VKRLFDLKNGSQSEVVKSQKQRGMELFQLREGDTGSSAVQVVSLTTRIQQLQTHMAKHRKDHSSKRGLDRMYVRRRKLLDYMERKSDPNYRKVVKSLGL 238          
BLAST of NO12G02870 vs. NCBI_GenBank
Match: XP_011409735.1 (PREDICTED: 28S ribosomal protein S15, mitochondrial-like [Amphimedon queenslandica])

HSP 1 Score: 83.2 bits (204), Expect = 8.400e-13
Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = 0
Query:   18 LPPPASPTCRPLSSSAAPSDSFSSIATPLYKY-LTPASLLQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162
            LP  +S  C   +SS A     S   T  YK+       +++ PE V++  +I+ A   +R +  K   I+K+   PGDTGST+VQ+A +T +IQ++ +H   NR+DK++ R     + RR+ L +YLRR DF  Y  ++KE  L
Sbjct:   24 LPSHSSLICSRAASSKAAGTGIS--ITSKYKFGYNDIPEMENSPEAVKKRFSIEFASKKQRNKLLKNEMIQKYQQNPGDTGSTAVQIAIMTAKIQNLTEHMRNNRKDKSSLRKLLHGIERRKKLFKYLRRTDFTRYHVLLKEFGL 166          
BLAST of NO12G02870 vs. NCBI_GenBank
Match: XP_008868748.1 (ribosomal protein S15 [Aphanomyces invadans] >ETW02143.1 ribosomal protein S15 [Aphanomyces invadans])

HSP 1 Score: 82.8 bits (203), Expect = 1.100e-12
Identity = 49/150 (32.67%), Postives = 81/150 (54.00%), Query Frame = 0
Query:   25 TCRPLSSSAAPSDSFSSIATPLYKYLTPASL-------------LQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162
            T R   +SAA S S       ++ Y+ PA++             +++ PE V R L+++NA   E  +   Q  I  F   PGDTGS+ VQ+A LT +I+ + +H   ++ D  +RRG  +++ +R+ L+QYLRR++   Y+ V+  L L
Sbjct:   13 TLRTSGTSAAFSSSVGGEKKRVFDYVAPAAITENDLRLGFKPSQIENAPEEVRRTLSLENASQAELNKIAIQKAIAAFQRFPGDTGSSEVQIAILTQKIKRMTEHFRDHKHDNHSRRGLQTMINKRKKLLQYLRRENLQQYRAVVAALGL 162          
BLAST of NO12G02870 vs. NCBI_GenBank
Match: WP_039672670.1 (30S ribosomal protein S15 [Sulfurospirillum cavolei] >KHG34270.1 30S ribosomal protein S15 [Sulfurospirillum sp. MES] >DAB36771.1 TPA: 30S ribosomal protein S15 [Sulfurospirillum cavolei])

HSP 1 Score: 81.6 bits (200), Expect = 2.400e-12
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 0
Query:   80 AEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162
            AEKQ+ + +FG + GDTGS  VQ+A L+ RI  + +H   N +D ++R G   L+ +R+ LMQYL+RKDF  Y  VIKEL++
Sbjct:    6 AEKQVIVSQFGRKEGDTGSPEVQIALLSKRISDLTEHLKLNAKDHSSRLGLLKLVGQRKRLMQYLKRKDFATYSKVIKELSI 87          
The following BLAST results are available for this feature:
BLAST of NO12G02870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25760.13.700e-5369.8830s ribosomal protein s15 [Nannochloropsis gaditan... [more]
GAX14436.11.400e-1542.57small subunit ribosomal protein S15 [Fistulifera s... [more]
GAX09910.11.400e-1542.57small subunit ribosomal protein S15 [Fistulifera s... [more]
XP_008611129.15.300e-1542.45hypothetical protein SDRG_07090 [Saprolegnia dicli... [more]
XP_012210459.19.000e-1542.45hypothetical protein SPRG_15875 [Saprolegnia paras... [more]
OQR92631.11.300e-1339.81hypothetical protein ACHHYP_03473 [Achlya hypogyna... [more]
EJK65565.16.400e-1341.41hypothetical protein THAOC_13560 [Thalassiosira oc... [more]
XP_011409735.18.400e-1335.86PREDICTED: 28S ribosomal protein S15, mitochondria... [more]
XP_008868748.11.100e-1232.67ribosomal protein S15 [Aphanomyces invadans] >ETW0... [more]
WP_039672670.12.400e-1247.5630S ribosomal protein S15 [Sulfurospirillum cavole... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL127nonsL127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR009ngnoR009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010217NSK010217Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02870.1NO12G02870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592586gene_5459Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100168g2gene4755Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02870.1NO12G02870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02870 ID=NO12G02870|Name=NO12G02870|organism=Nannochloropsis oceanica|type=gene|length=901bp
ATTAGAATCATGTCTCTAGACAGCTTTAGTGAGCGACGTAGATTTGTACG
CTTCAAAGCGAACCTCCCCCTTGCTGCGAGATGTGACCCGGAGCCCGGAA
ACGGTGGGCGGGCAGGGTCTCGTCTTTCATTCGTTGCACGTATGCCATTT
TGGAAGGGGAGCGCTCACATGTTATTGACATCACCGCTGCATCGATAGTA
CAAAGGCTGTAATGCTTCAGCAGGCGGCGGATTCCTGGTCTTCCTATCGG
CCACTCATCATGAAGCATCATCCCTGAAGATCCTCACGCGACATACAACT
TGACCACATCGCTCTTCTCACACAATGACCACACATGAATACTACACAGG
TACACATACACAAGACCTCATAAGTTATGTGGCGCCAGCGGCTTCTTTAT
TCGGTCCGCCTGTCCTCGCCCTCGTCCCTGCCTCCTCCCGCCTCCCCGAC
TTGTCGCCCGCTCTCCTCCTCAGCAGCCCCGTCAGACTCCTTTTCCTCCA
TCGCCACGCCTTTGTACAAGTACCTGACCCCAGCCAGCCTGCTGCAATCC
GTCCCCGAGCCAGTAGAACGGGCTTTAAACATTGACAACGCCGACGCACC
CGAACGCAAGCAAGCCGAGAAGCAGCTGGGAATTGAGAAGTTTGGCGTCC
GACCAGGCGACACAGGCTCCACGTCTGTGCAGGTGGCTTGTTTGACGATC
CGCATCCAGCACATCAAAGACCATTGCGCAACAAACAGGCAAGATAAAGC
GGCCCGTCGTGGGTACACGTCGTTGCTGACGAGGCGGCGTAACTTGATGC
AGTACTTGCGGCGGAAGGACTTCGGGGCTTATCAGCATGTGATCAAGGAG
TTGAATTTGACGGGGTTTACGTAACGAAGGAATGATGTATTTTGATGTGA
G
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protein sequence of NO12G02870.1

>NO12G02870.1-protein ID=NO12G02870.1-protein|Name=NO12G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MWRQRLLYSVRLSSPSSLPPPASPTCRPLSSSAAPSDSFSSIATPLYKYL
TPASLLQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTS
VQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFG
AYQHVIKELNLTGFT*
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Synonyms
Publications