NO12G02870.1, NO12G02870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02870.1
Unique NameNO12G02870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length901
Alignment locationchr12:798426..799326 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:798426..799326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G02870.1 vs.
Match: EWM25760.1 (30s ribosomal protein s15 [Nannochloropsis gaditana])

HSP 1 Score: 217.2 bits (552), Expect = 3.700e-53
Identity = 116/166 (69.88%), Postives = 132/166 (79.52%), Query Frame = 0 
Query:    1 MWRQRLLYSVRLSSPSSLPPPASPTCRPLSSSAAPSDSFSSIA-TPLYKYLTPASLLQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNLTGFT 166
            MWRQ+L    RL S S       PT R L+SSAA S+  S  + +P YKYL P SLLQ  P PV+RAL+I+NADAPERKQAEKQ  IEKFGVRPGDTGSTSVQVACLT+RI+H+KDHC  N+QDKAARRGYT+LLTRRR LM+YLRRKDF +YQ+VIKEL LTGFT
Sbjct:    1 MWRQQLASLARLPSSSISSCKNGPTNRLLASSAASSEPLSPPSKSPSYKYLIPGSLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGLTGFT 166
The following BLAST results are available for this feature:
BLAST of NO12G02870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25760.13.700e-5369.8830s ribosomal protein s15 [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02870NO12G02870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02870.1NO12G02870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02870.1.cds1NO12G02870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02870.1 ID=NO12G02870.1|Name=NO12G02870.1|organism=Nannochloropsis oceanica|type=mRNA|length=901bp
ATTAGAATCATGTCTCTAGACAGCTTTAGTGAGCGACGTAGATTTGTACG
CTTCAAAGCGAACCTCCCCCTTGCTGCGAGATGTGACCCGGAGCCCGGAA
ACGGTGGGCGGGCAGGGTCTCGTCTTTCATTCGTTGCACGTATGCCATTT
TGGAAGGGGAGCGCTCACATGTTATTGACATCACCGCTGCATCGATAGTA
CAAAGGCTGTAATGCTTCAGCAGGCGGCGGATTCCTGGTCTTCCTATCGG
CCACTCATCATGAAGCATCATCCCTGAAGATCCTCACGCGACATACAACT
TGACCACATCGCTCTTCTCACACAATGACCACACATGAATACTACACAGG
TACACATACACAAGACCTCATAAGTTATGTGGCGCCAGCGGCTTCTTTAT
TCGGTCCGCCTGTCCTCGCCCTCGTCCCTGCCTCCTCCCGCCTCCCCGAC
TTGTCGCCCGCTCTCCTCCTCAGCAGCCCCGTCAGACTCCTTTTCCTCCA
TCGCCACGCCTTTGTACAAGTACCTGACCCCAGCCAGCCTGCTGCAATCC
GTCCCCGAGCCAGTAGAACGGGCTTTAAACATTGACAACGCCGACGCACC
CGAACGCAAGCAAGCCGAGAAGCAGCTGGGAATTGAGAAGTTTGGCGTCC
GACCAGGCGACACAGGCTCCACGTCTGTGCAGGTGGCTTGTTTGACGATC
CGCATCCAGCACATCAAAGACCATTGCGCAACAAACAGGCAAGATAAAGC
GGCCCGTCGTGGGTACACGTCGTTGCTGACGAGGCGGCGTAACTTGATGC
AGTACTTGCGGCGGAAGGACTTCGGGGCTTATCAGCATGTGATCAAGGAG
TTGAATTTGACGGGGTTTACGTAACGAAGGAATGATGTATTTTGATGTGA
G
back to top

protein sequence of NO12G02870.1

>NO12G02870.1-protein ID=NO12G02870.1-protein|Name=NO12G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MWRQRLLYSVRLSSPSSLPPPASPTCRPLSSSAAPSDSFSSIATPLYKYL
TPASLLQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTS
VQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFG
AYQHVIKELNLTGFT*
back to top

mRNA from alignment at chr12:798426..799326+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02870.1 ID=NO12G02870.1|Name=NO12G02870.1|organism=Nannochloropsis oceanica|type=mRNA|length=901bp|location=Sequence derived from alignment at chr12:798426..799326+ (Nannochloropsis oceanica)
ATTAGAATCATGTCTCTAGACAGCTTTAGTGAGCGACGTAGATTTGTACG
CTTCAAAGCGAACCTCCCCCTTGCTGCGAGATGTGACCCGGAGCCCGGAA
ACGGTGGGCGGGCAGGGTCTCGTCTTTCATTCGTTGCACGTATGCCATTT
TGGAAGGGGAGCGCTCACATGTTATTGACATCACCGCTGCATCGATAGTA
CAAAGGCTGTAATGCTTCAGCAGGCGGCGGATTCCTGGTCTTCCTATCGG
CCACTCATCATGAAGCATCATCCCTGAAGATCCTCACGCGACATACAACT
TGACCACATCGCTCTTCTCACACAATGACCACACATGAATACTACACAGG
TACACATACACAAGACCTCATAAGTTATGTGGCGCCAGCGGCTTCTTTAT
TCGGTCCGCCTGTCCTCGCCCTCGTCCCTGCCTCCTCCCGCCTCCCCGAC
TTGTCGCCCGCTCTCCTCCTCAGCAGCCCCGTCAGACTCCTTTTCCTCCA
TCGCCACGCCTTTGTACAAGTACCTGACCCCAGCCAGCCTGCTGCAATCC
GTCCCCGAGCCAGTAGAACGGGCTTTAAACATTGACAACGCCGACGCACC
CGAACGCAAGCAAGCCGAGAAGCAGCTGGGAATTGAGAAGTTTGGCGTCC
GACCAGGCGACACAGGCTCCACGTCTGTGCAGGTGGCTTGTTTGACGATC
CGCATCCAGCACATCAAAGACCATTGCGCAACAAACAGGCAAGATAAAGC
GGCCCGTCGTGGGTACACGTCGTTGCTGACGAGGCGGCGTAACTTGATGC
AGTACTTGCGGCGGAAGGACTTCGGGGCTTATCAGCATGTGATCAAGGAG
TTGAATTTGACGGGGTTTACGTAACGAAGGAATGATGTATTTTGATGTGA
G
back to top

Coding sequence (CDS) from alignment at chr12:798426..799326+

>NO12G02870.1 ID=NO12G02870.1|Name=NO12G02870.1|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at chr12:798426..799326+ (Nannochloropsis oceanica)
ATGTGGCGCCAGCGGCTTCTTTATTCGGTCCGCCTGTCCTCGCCCTCGTC
CCTGCCTCCTCCCGCCTCCCCGACTTGTCGCCCGCTCTCCTCCTCAGCAG
CCCCGTCAGACTCCTTTTCCTCCATCGCCACGCCTTTGTACAAGTACCTG
ACCCCAGCCAGCCTGCTGCAATCCGTCCCCGAGCCAGTAGAACGGGCTTT
AAACATTGACAACGCCGACGCACCCGAACGCAAGCAAGCCGAGAAGCAGC
TGGGAATTGAGAAGTTTGGCGTCCGACCAGGCGACACAGGCTCCACGTCT
GTGCAGGTGGCTTGTTTGACGATCCGCATCCAGCACATCAAAGACCATTG
CGCAACAAACAGGCAAGATAAAGCGGCCCGTCGTGGGTACACGTCGTTGC
TGACGAGGCGGCGTAACTTGATGCAGTACTTGCGGCGGAAGGACTTCGGG
GCTTATCAGCATGTGATCAAGGAGTTGAATTTGACGGGGTTTACGTAA
back to top
Synonyms
Publications