NO12G02840, NO12G02840 (gene) Nannochloropsis oceanica

Overview
NameNO12G02840
Unique NameNO12G02840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2505
Alignment locationchr12:791264..793768 +

Link to JBrowse

Properties
Property NameValue
DescriptionAcidocalcisomal pyrophosphatase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:791264..793768 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000287magnesium ion binding
GO:0004427inorganic diphosphatase activity
GO:0016787hydrolase activity
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006796phosphate-containing compound metabolic process
GO:0009987cellular process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036649Pyrophosphatase_sf
IPR008162Pyrophosphatase
Homology
BLAST of NO12G02840 vs. NCBI_GenBank
Match: EWM25757.1 (acidocalcisomal pyrophosphatase [Nannochloropsis gaditana])

HSP 1 Score: 552.4 bits (1422), Expect = 9.800e-154
Identity = 268/315 (85.08%), Postives = 285/315 (90.48%), Query Frame = 0
Query:    1 MKRVASINTINRLTKVQEGEHDTVDYRVHSLDHNEERISLWHELPLFAVDDDARPTGALNFICEIPKFTRRKFEICTTEAGNPIKQDEKNGKPRVFSKGDIFFNYGCFPRTWEDPKHVPEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVKVLGVLCLIDDGEADWKVIAIDEEDRWAGELNDVQDVERLLPGTLHAIREWFRTYKIPDGKPENRFALGERFMGVKYTMRVIRETHEAWKRLIKSSGGMGG--VGEGSNGSLARNLSVPSLEKLNMDSDQQAVFALMGPDGTPRVPGAVG---PLTCLVGEEEGGG 311
            MKRVAS+NTINRLTKVQEGEHDTVDYRVHSLDHN+ERISLWHELPLFAVDDDA+PTGALNFICEIPKFTRRKFEICTTEAGNPIKQD+KNGKPRVFSKGDIFFNYGCFPRTWEDP+HVPEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVKVLGVLCLIDDGEADWKVIAIDEEDRWA ELNDVQDVERLLPGTL A+REWFRTYKIPDGKPENRFALGE FMGVKYTMRVIRETHEAWKRL+KSSGG  G    E S+ SL RNLSVPSLE+L++DSD QAV AL+G +   +  G++G   P     GE+ G G
Sbjct:    1 MKRVASVNTINRLTKVQEGEHDTVDYRVHSLDHNQERISLWHELPLFAVDDDAKPTGALNFICEIPKFTRRKFEICTTEAGNPIKQDQKNGKPRVFSKGDIFFNYGCFPRTWEDPQHVPEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVKVLGVLCLIDDGEADWKVIAIDEEDRWARELNDVQDVERLLPGTLDAVREWFRTYKIPDGKPENRFALGEEFMGVKYTMRVIRETHEAWKRLVKSSGGWRGDLSREASSQSLHRNLSVPSLEELDIDSDHQAVCALLGEEAASKACGSLGGPPPPGLRGGEDVGRG 315          
BLAST of NO12G02840 vs. NCBI_GenBank
Match: CBN78155.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 334.3 bits (856), Expect = 4.200e-88
Identity = 159/280 (56.79%), Postives = 196/280 (70.00%), Query Frame = 0
Query:    4 VASINTINRLTKVQEGEHDTVDYRVH----SLDHNEERISLWHELPLFAVDDDARPTGALNFICEIPKFTRRKFEICTTEAGNPIKQDEKNGKPRVFSKGDIFFNYGCFPRTWEDPKHVPEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVKVLGVLCLIDDGEADWKVIAIDEEDRWAGELNDVQDVERLLPGTLHAIREWFRTYKIPDGKPENRFALGERFMGVKYTMRVIRETHEAWKRLIKSSGGMGGVGEGSNGSLARNLSVPSLEKLNMDSDQQA 280
            V + +  ++L   + GE  T+DYR+        H+++ IS+WH++PL+  D+  + TG LNF+CEIP+ +R+KFEI T E GNPIKQD K G  R F KGDIFFNYGCFPRTWEDP+HV  D    GDNDPLDVCEIGLR + TG VRQVKVLGVL +ID+ E DWKVI ID EDRWA ELNDV+DVERLLPG + AIREWFRTYK+PDGKPEN+FAL ER MG  Y M+V+ E H AW+ L         VG+   G +  NLSV  L  +  D + ++
Sbjct:   16 VPAASAEDKLNIFESGEEGTLDYRLRFAMAEHAHSQQVISVWHDIPLYVRDEAEKCTGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKKGDIFFNYGCFPRTWEDPEHVHPDTKFPGDNDPLDVCEIGLRIVATGDVRQVKVLGVLAMIDEDETDWKVIVIDREDRWAPELNDVEDVERLLPGVVPAIREWFRTYKVPDGKPENKFALDERCMGRSYAMKVVSECHLAWRNL---------VGKAELGEVKSNLSVSRLSDMGSDIELES 286          
BLAST of NO12G02840 vs. NCBI_GenBank
Match: XP_009034593.1 (hypothetical protein AURANDRAFT_21835 [Aureococcus anophagefferens] >EGB11034.1 hypothetical protein AURANDRAFT_21835 [Aureococcus anophagefferens])

HSP 1 Score: 322.8 bits (826), Expect = 1.300e-84
Identity = 157/252 (62.30%), Postives = 179/252 (71.03%), Query Frame = 0
Query:    2 KRVASINTINRLTKVQEGEHDTVDYRVHSL--DHNEER----ISLWHELPLFAVDDDARPTGALNFICEIPKFTRRKFEICTTEAGNPIKQDEKNGKPRVFSKGDIFFNYGCFPRTWEDPKHVPEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVKVLGVLCLIDDGEADWKVIAIDEEDRWAGELNDVQDVERLLPGTLHAIREWFRTYKIPDGKPENRFALGERFMGVKYTMRVIRETHEAWKRLIKSSGG 248
            K+ A    I  L  ++ G+  T DYRVH L  D +E +    +SLWH++PL A     R +   NFICEIPK TR+KFE+ TTE   PIKQD K G  R F KGDIFFNYGCFPRTWEDP+HV  D G  GDNDPLDVCEIGLRQI TG +R VKVLGVL +IDD E DWK++AID  DRWA ELNDV DVERLLPGT+  IREWFRTYKIPDGKP N+FALGE   G  Y  +VI ETHEAW  L+K+  G
Sbjct:   51 KQAARCRAIETLI-MERGQAGTKDYRVHVLAKDGDEAKTVAELSLWHDVPLAAPGSSGRGS-LFNFICEIPKCTRKKFEVATTEGATPIKQDTKKGVLREFKKGDIFFNYGCFPRTWEDPRHVSPDTGYPGDNDPLDVCEIGLRQIQTGEIRAVKVLGVLAMIDDDETDWKIVAIDAADRWASELNDVGDVERLLPGTVSLIREWFRTYKIPDGKPPNKFALGEECKGAAYAHKVIHETHEAWVNLVKTQVG 300          
BLAST of NO12G02840 vs. NCBI_GenBank
Match: XP_009039444.1 (hypothetical protein AURANDRAFT_72128 [Aureococcus anophagefferens] >EGB05902.1 hypothetical protein AURANDRAFT_72128 [Aureococcus anophagefferens])

HSP 1 Score: 317.0 bits (811), Expect = 6.900e-83
Identity = 152/254 (59.84%), Postives = 180/254 (70.87%), Query Frame = 0
Query:    5 ASINTINRLTKVQEGEHDTVDYRVHSLD--------HNEERISLWHELPLFAVD---DDARPTGALNFICEIPKFTRRKFEICTTEAGNPIKQDEKNGKPRVFSKGDIFFNYGCFPRTWEDPKHVPEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVKVLGVLCLIDDGEADWKVIAIDEEDRWAGELNDVQDVERLLPGTLHAIREWFRTYKIPDGKPENRFALGERFMGVKYTMRVIRETHEAWKRLIKSSGG 248
            A ++ +N L  ++ G  +T DYRVH LD         + + +SLWH++PL A D   + + PT   NF+CEIPK TR+KFE+ T E   PIKQD K G  R F KGDIFFNYGCFPRTWEDP+H   D G  GDNDPLDVCEIGLRQ+ TG +R VKVLGVL +IDD E DWKV+AID EDRWA ELNDV DVERLLPGT+  IREWFRTYKIPDGKP N+FA  ER +   Y ++VI ETHE++  LIK   G
Sbjct:   55 ARLDELNTLV-LERGSANTTDYRVHVLDAPRAAGRSGSTKELSLWHDVPLVAADGAPESSTPT--FNFVCEIPKCTRKKFEVATNEHVTPIKQDTKKGVLREFKKGDIFFNYGCFPRTWEDPRHTSPDTGYPGDNDPLDVCEIGLRQVRTGEIRAVKVLGVLAMIDDDETDWKVVAIDAEDRWASELNDVDDVERLLPGTVGLIREWFRTYKIPDGKPPNKFAFEERCLPAAYALKVIHETHESYLELIKEGKG 305          
BLAST of NO12G02840 vs. NCBI_GenBank
Match: XP_002177756.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50570.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 310.1 bits (793), Expect = 8.500e-81
Identity = 152/282 (53.90%), Postives = 192/282 (68.09%), Query Frame = 0
Query:    2 KRVASINTINRLTKVQEGEHDTVDYRVHSLD-HNEERISLWHELPLFAVDDDAR-PTGALNFICEIPKFTRRKFEICTTEAGNPIKQDEKNGKPRVFSKGDIFFNYGCFPRTWEDPKHV-PEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVKVLGVLCLIDDGEADWKVIAIDEEDRWAGELNDVQDVERLLPGTLHAIREWFRTYKIPDGKPENRFALGERFMGVKYTMRVIRETHEAWKRLIKSSGGMGGVGEGSN-GSLARNLSVPSLEKLNMDSDQQA 280
            KR AS ++ N +    +G  DT++YR+ ++D    ++ISLWH++ L  +D + R  T  LNF+CEIPKFTR+K+EI T E GNPIKQDEK G  R F KGDIFFNYGCFP+TWEDP  + P+  G  GDNDPLDVCEIG R +  G VR VKVLGVLC+ID+GE DWKV+ +D +D+WA  LND+ DVE  LPG L AIREW+RTYKIPDGKP N F L E+FMG  Y + +I+E H +W+ L+           G     L RNLS  SL  L ++ D+ A
Sbjct:   16 KRTASASS-NEIELEADGMEDTLEYRLQAVDASGSKKISLWHDVSLIHLDQETREETQYLNFVCEIPKFTRKKYEIATDEPGNPIKQDEKKGTLREFKKGDIFFNYGCFPQTWEDPTFIHPDAEGCRGDNDPLDVCEIGARIVRPGGVRPVKVLGVLCMIDEGECDWKVVVVDADDKWAPFLNDINDVEEQLPGLLDAIREWYRTYKIPDGKPPNVFGLDEKFMGKAYALEIIQECHHSWEELLAGEKERLLEDHGDEVKDLVRNLSRNSLFTLGLNLDEHA 296          
BLAST of NO12G02840 vs. NCBI_GenBank
Match: XP_002290146.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91898.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 309.3 bits (791), Expect = 1.400e-80
Identity = 154/282 (54.61%), Postives = 193/282 (68.44%), Query Frame = 0
Query:    3 RVASINTINRLTKVQEGEHDTVDYRVHSLDH--NEERISLWHELPLFAVDDDA-RPTGALNFICEIPKFTRRKFEICTTEAGNPIKQDEKNGKPRVFSKGDIFFNYGCFPRTWEDPKHV-PEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVKVLGVLCLIDDGEADWKVIAIDEEDRWAGELNDVQDVERLLPGTLHAIREWFRTYKIPDGKPENRFALGERFMGVKYTMRVIRETHEAWKRLIKSSGGMGGVG-EGSNGSLARNLSVPSLEKLNMDSDQQA 280
            R +S  + + L  +  G+ +T +YR+ ++D   + + ISLWH++ L  VD    RPT  LNF+CEIPKF+R+KFEI T E GN IKQDEK G  R F KGDIFFNYGC PRTWEDP ++ P+  G  GDNDP+DVCEIG R + TG +R VKVLG+LC+ID+GEADWKV+ ID ED+WA  LNDV DVE+ LPGTL AIREWFRTYKIPDGKP N F L E+FM   Y + +I+E + AWK LI      G    + +  +L R LS  +L  L  D D +A
Sbjct:   22 RSSSHGSNSNLDLLSHGDENTTEYRIKAVDKAGSSKPISLWHDVTLVHVDPATDRPTPYLNFVCEIPKFSRKKFEIATDEVGNFIKQDEKKGVLREFKKGDIFFNYGCLPRTWEDPTYIHPDAEGCRGDNDPVDVCEIGARIVKTGEIRPVKVLGILCMIDEGEADWKVVTIDAEDKWAPFLNDVDDVEKHLPGTLSAIREWFRTYKIPDGKPPNVFGLDEKFMDKHYALEIIKECNHAWKDLITGEKERGMEHCDDTVKTLVRKLSKSNLVDLAHDDDDEA 303          
BLAST of NO12G02840 vs. NCBI_GenBank
Match: EJK53091.1 (hypothetical protein THAOC_27535 [Thalassiosira oceanica])

HSP 1 Score: 305.8 bits (782), Expect = 1.600e-79
Identity = 153/265 (57.74%), Postives = 181/265 (68.30%), Query Frame = 0
Query:   19 GEHDTVDYRVHSLDHNEER-ISLWHELPLFAVDDDA-RPTGALNFICEIPKFTRRKFEICTTEAGNPIKQDEKNGKPRVFSKGDIFFNYGCFPRTWEDPKHV-PEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVKVLGVLCLIDDGEADWKVIAIDEEDRWAGELNDVQDVERLLPGTLHAIREWFRTYKIPDGKPENRFALGERFMGVKYTMRVIRETHEAWKRLIKSSGGMG-GVGEGSNGSLARNLSVPSLEKLNMDSDQQA 280
            G+  T ++R+ + D +  + ISLWH++ L  VD    RPT  LNF+CEIPKFTR+KFEI T E GN IKQDEK G  R F KGDIFFNYGC PRTWEDP  V P+  G  GDNDP+DVCEIG R I TG +R VKVLG+LC+ID+GEADWKV+ ID ED+WA  LNDV DVE+LLPGTL AIREWFRTYKIPDGKP N F L E+FM   Y + +I+E + AWK LI           +     L R LS  +L  L+ D D  A
Sbjct:   36 GDEQTTEFRIKASDKSGSKPISLWHDVTLVHVDPATDRPTPYLNFVCEIPKFTRKKFEIATDEVGNFIKQDEKKGVLREFKKGDIFFNYGCLPRTWEDPTFVHPDAEGCRGDNDPVDVCEIGSRIIGTGDIRPVKVLGILCMIDEGEADWKVVTIDAEDKWAPFLNDVDDVEKLLPGTLSAIREWFRTYKIPDGKPPNVFGLDEKFMDKHYALEIIKECNHAWKELITGEKERNLEKCDAEVRGLVRKLSKSNLLDLDADDDDNA 300          
BLAST of NO12G02840 vs. NCBI_GenBank
Match: OEU12349.1 (inorganic pyrophosphatase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 297.4 bits (760), Expect = 5.700e-77
Identity = 153/286 (53.50%), Postives = 186/286 (65.03%), Query Frame = 0
Query:    2 KRVASINTINRLTKVQEGEHDTVDYRVHSL-----DHNEERISLWHELPLFAVDDDA-RPTGALNFICEIPKFTRRKFEICTTEAGNPIKQDEKNGKPRVFSKGDIFFNYGCFPRTWEDPKHV-PEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVKVLGVLCLIDDGEADWKVIAIDEEDRWAGELNDVQDVERLLPGTLHAIREWFRTYKIPDGKPENRFALGERFMGVKYTMRVIRETHEAWKRLI---KSSGGMGGVGEGSNGSLARNLSVPSLEKLNMDSDQ 278
            KR  S  +   +   +EGE +T++YRVH+      DH  + ISLWH++ L  +D      T  LNF+CEIPKFTR+K+EI T E   PIKQD K G  R F KGDIFFNYGCFP+TWEDP  V P+  G  GDNDP+DVCEIG R    G VR VKVLGVL +ID+GEADWK+I ID++D+WA  +ND++DVE  LPG L AIREW+RTYKIPDGKP N F L ERFM   Y M VI E + AWK L+   K       +GE   G L R LS  SL  +  + D+
Sbjct:    4 KRSDSFGSDKDINLHEEGEENTLEYRVHAKHGGDGDHKGKTISLWHDVSLVHIDPATNEKTDCLNFVCEIPKFTRKKYEIATDEDFTPIKQDTKKGVLREFKKGDIFFNYGCFPQTWEDPTFVHPDADGCRGDNDPVDVCEIGARICGVGGVRPVKVLGVLMMIDEGEADWKIITIDKDDKWAPFMNDIEDVEEQLPGLLDAIREWYRTYKIPDGKPPNTFGLDERFMNKAYAMTVIDECNHAWKDLVSGEKERNMSADLGEEVKG-LVRKLSKNSLSLMAPNLDE 288          
BLAST of NO12G02840 vs. NCBI_GenBank
Match: GAX20176.1 (inorganic pyrophosphatase [Fistulifera solaris])

HSP 1 Score: 297.4 bits (760), Expect = 5.700e-77
Identity = 144/245 (58.78%), Postives = 175/245 (71.43%), Query Frame = 0
Query:    1 MKRVASINTINRLTKVQEGEHDTVDYRVHSL-DHNEERISLWHELPLFAVDDDAR-PTGALNFICEIPKFTRRKFEICTTEAGNPIKQDEKNGKPRVFSKGDIFFNYGCFPRTWEDPKHV-PEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVKVLGVLCLIDDGEADWKVIAIDEEDRWAGELNDVQDVERLLPGTLHAIREWFRTYKIPDGKPENRFALGERFMGVKYTMRVIRETHEAWKRLI 243
            +KR  S    + L     GE DT+DYR+ ++    +++ISLWH++ L+ +D   +  T  LNF+CEIPKFTR+KFEI T E GNPIKQD K G+ R F KGDIFFNYGCFP+TWEDP  + P+  G  GDNDPLDVCEIG R I  G VR VKVLGVL +ID+GE DWKV+ ID ED+WA  LND++DVER LPG L AIREW+RTYKIPDGKP N F L E+FM  +Y   VI E H AW+ L+
Sbjct:   18 LKRNNSRGPGSELELSHHGEADTLDYRLQAVCPEKKKKISLWHDISLYHMDPVTKAETPYLNFVCEIPKFTRKKFEIATDEEGNPIKQDTKKGQLREFKKGDIFFNYGCFPQTWEDPTFIHPDADGCRGDNDPLDVCEIGARIIQPGDVRAVKVLGVLLMIDEGECDWKVVVIDIEDKWAPFLNDIEDVERELPGQLDAIREWYRTYKIPDGKPPNVFGLDEKFMNKEYAKGVIDECHHAWELLM 262          
BLAST of NO12G02840 vs. NCBI_GenBank
Match: GAX25481.1 (inorganic pyrophosphatase [Fistulifera solaris])

HSP 1 Score: 297.0 bits (759), Expect = 7.400e-77
Identity = 143/245 (58.37%), Postives = 175/245 (71.43%), Query Frame = 0
Query:    1 MKRVASINTINRLTKVQEGEHDTVDYRVHSL-DHNEERISLWHELPLFAVDDDAR-PTGALNFICEIPKFTRRKFEICTTEAGNPIKQDEKNGKPRVFSKGDIFFNYGCFPRTWEDPKHV-PEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVKVLGVLCLIDDGEADWKVIAIDEEDRWAGELNDVQDVERLLPGTLHAIREWFRTYKIPDGKPENRFALGERFMGVKYTMRVIRETHEAWKRLI 243
            +KR  S    + L     GE DT+DYR+ ++    +++ISLWH++ L+ +D   +  T  LNF+CEIPKFTR+KFEI T E GNPIKQD K G+ R F KGDIFFNYGCFP+TWEDP  + P+  G  GDNDPLDVCEIG R I  G VR VKVLG+L +ID+GE DWKV+ ID ED+WA  LND++DVER LPG L AIREW+RTYKIPDGKP N F L E+FM  +Y   VI E H AW+ L+
Sbjct:   18 LKRNNSRGPGSELELSHHGEADTLDYRLQAVCPEKKKKISLWHDISLYHMDPVTKAETPYLNFVCEIPKFTRKKFEIATDEEGNPIKQDTKKGQLREFKKGDIFFNYGCFPQTWEDPTFIHPDADGCRGDNDPLDVCEIGARIIQPGDVRAVKVLGILLMIDEGECDWKVVVIDIEDKWAPFLNDIEDVERELPGQLDAIREWYRTYKIPDGKPPNVFGLDEKFMNKEYAKGVIDECHHAWELLM 262          
The following BLAST results are available for this feature:
BLAST of NO12G02840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25757.19.800e-15485.08acidocalcisomal pyrophosphatase [Nannochloropsis g... [more]
CBN78155.14.200e-8856.79conserved unknown protein [Ectocarpus siliculosus][more]
XP_009034593.11.300e-8462.30hypothetical protein AURANDRAFT_21835 [Aureococcus... [more]
XP_009039444.16.900e-8359.84hypothetical protein AURANDRAFT_72128 [Aureococcus... [more]
XP_002177756.18.500e-8153.90predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002290146.11.400e-8054.61predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK53091.11.600e-7957.74hypothetical protein THAOC_27535 [Thalassiosira oc... [more]
OEU12349.15.700e-7753.50inorganic pyrophosphatase [Fragilariopsis cylindru... [more]
GAX20176.15.700e-7758.78inorganic pyrophosphatase [Fistulifera solaris][more]
GAX25481.17.400e-7758.37inorganic pyrophosphatase [Fistulifera solaris][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL127nonsL127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR009ngnoR009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010222NSK010222Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02840.1NO12G02840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556551gene_5455Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100162g1gene4757Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02840.1NO12G02840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02840 ID=NO12G02840|Name=NO12G02840|organism=Nannochloropsis oceanica|type=gene|length=2505bp
TCCTGCTTCTTTGGTAGCCTCCGCCACCGAAGCAAAAAAGAGAACCCAGC
GTGGCTAATTTTTCTACCCACCACACCCAGCACCCGCTCTCCGCCCTACC
CACCAAAGTCAGCCATGAAGCGTGTCGCCTCCATCAACACCATCAACCGC
TTGACCAAAGTCCAGgtacgtacaaattgtatagaagacatcgtgagaca
accgggtgggatggtgagggaggcgtagagagggtggtggtggcgtggcg
ctcgggcacgatcggagggcgctgtgcatgccgagcgaagtgagggtgtg
agcaaataaaaaatcaacacacttttttcaatagctcttaatcaacctct
atgcgtagtgctagaatacatggatgaacgacaaacgccaagaacggcag
gctcggaacaattatccctacgattcctgctgtctgacaaaacgaaccta
cgccattctcaaccccatacacccgcaaatcctctgctccccaccgattt
accctacatatagGAAGGAGAACATGACACGGTGGATTATCGCGTGCATT
CCCTCGACCATAACGAGGAGCGCATCTCCCTCTGGCATGAGCTGCCCCTC
TTTGCCGTTGACGACGATGCCCGACCCACAGGCGCACTCAACTTCATTTG
CGAGATgtacgtagcttcttacatctttcgactcgtccgggggtagccct
gtagggaactgtgccttttcctctctgctcttttatttcctcgagagtat
gtgctcctcattcacccatccctctcccttttctttcttcccttcctccc
ctccttccctccagCCCCAAGTTCACTCGCCGCAAGTTCGAAATCTGCAC
CACCGAAGCCGGGAATCCTATAAAGCAAGACGAAAAGAACGGCAAGCCTC
GCGTGTTTTCGAAGGGCGACATTTTCTTTAACTATGGTTGCTTCCCCCGG
ACCTGGGAAGACCCCAAACATGTGCCCGAGGACGTAGGGGTGGGGGGGGA
TAATGACCCTCTCGACGTTTGTGAGATTGGCCTGCGACAGATCCCAACGG
GGGCTGTGCGGCAGGTGAAGGTGCTGGGTGTGTTGTGCCTGATCGATGAT
GGCGAGGCAGACTGGAAGGTGATCGCGATTGACGAGGAGGACCGATGGGC
GGGGGAACTGAATGATGTCCAGGATGTGGAGAGGCTGCTGCCGGGGACGT
TGCACGCGATAAGGGAGTGGTTCAGGACGTACAAGATTCCAGACGGGAAG
CCGGAGAACAGGTTTGCGCTGGGGGAGAGGTTTATGGGCGTTAAATATAC
CATGCGGGTGATCCGGGAGACGCACGAGGCCTGGAAACGCCTGATCAAGT
CAAGTGGAGGGATGGGGGGCGTTGGGGAGGGGAGTAACGGGTCGTTGGCG
CGAAATTTGTCGGTACCGAGTTTGGAGAAGTTGAATATGGATAGCGATCA
GCAGGCAGTGTTTGCTTTGATGGGTCCGGACGGGACACCGCGGGTGCCAG
GGGCAGTAGGGCCATTGACGTGTCTGGTAGGGGAGGAGGAAGGGGGGGGG
GAAATGAGGGGGGAGGGCAGGGTGCGAGGCGGGCAGGAGAGGATGCAACG
GCGGTGGTGGGGGGCTTAAATGGCGTGGGAGGGGTGGATGGGCAGTCAGG
GGGGAGGGAAGGGTCAAGGACCGTGACGCCGGTTGCGGAGGGGGCGTTAG
AGTTTTAGGGCAGGTTGTGGGTGTAATCGAGGTCGAGAGCGACGGGGGGT
TTGAGAGAAGGGGATTCATCGATGCTGTTGCGATTGGTGGGCGGAAAGGG
GGGGAAGGCGGCTCAAGGTTTGCGCCGGGTTGCTGTGTTTGGGAGGAGGG
AGGGAGGAGAGAGGAGGGATGTCAGGATGTCAGAGAGGGAAAGAATAGGG
TCGAGTAGGTCTTATCTGACTGATACTACTGACCTCTATTTCTCTCCCCC
TTTTATTCTGCTCTTCGTCTTTGGCCATTTCGCTGTGTACGATCCAGAAC
GGTGCACGGGAATAGAAAGACCACCAATGGAGGAGAGATGATTAGATCGA
GGTAAAGAATGAGAAAGAACGACGAGAAGAGGGGTTGAAAGGGACCGACA
GGAAGAGAAAGCCATGGAAGCAGGAAAGTCGCGTTATGAATGGGCCCTGC
GCGAGTTTCCTCCCCTTTTTCTCTCGTTCCCTCCCCTAAACCCTCTTCTC
ATCCCTTTCGCCGGTCCATGATCGTTCGTTCATTCATTCGTCCCAATGAA
ATGAATTGCAAGTAAACATTATGATTTTGGAAGAAGCATTTCGTCTGCAA
GGAGGTGGATCGCGGACAGGCAAGGGAGATACAAGGTGAGGTAAGGGGGG
GGAAGAACAGCTTCCATGTGTGTAAAGAACGGACGATGACGAAGCCGAGC
AGACGGCCTATGCGAAAATAGAAAATATCGAATTTAATCAGGGAATAGGA
GGGAGATAATCCGTGTGCTACATACGCCGGCCTTTGTGCCTCCTCCTCCT
CCTCC
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protein sequence of NO12G02840.1

>NO12G02840.1-protein ID=NO12G02840.1-protein|Name=NO12G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MKRVASINTINRLTKVQEGEHDTVDYRVHSLDHNEERISLWHELPLFAVD
DDARPTGALNFICEIPKFTRRKFEICTTEAGNPIKQDEKNGKPRVFSKGD
IFFNYGCFPRTWEDPKHVPEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVK
VLGVLCLIDDGEADWKVIAIDEEDRWAGELNDVQDVERLLPGTLHAIREW
FRTYKIPDGKPENRFALGERFMGVKYTMRVIRETHEAWKRLIKSSGGMGG
VGEGSNGSLARNLSVPSLEKLNMDSDQQAVFALMGPDGTPRVPGAVGPLT
CLVGEEEGGGEMRGEGRVRGGQERMQRRWWGA*
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Synonyms
Publications