NO12G02730, NO12G02730 (gene) Nannochloropsis oceanica

Overview
NameNO12G02730
Unique NameNO12G02730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1086
Alignment locationchr12:765590..766675 -

Link to JBrowse

Properties
Property NameValue
DescriptionDna excision repair protein ercc-6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:765590..766675 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Homology
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BLAST of NO12G02730 vs. NCBI_GenBank
Match: EWM25756.1 (dna excision repair protein ercc-6 [Nannochloropsis gaditana])

HSP 1 Score: 106.7 bits (265), Expect = 6.800e-20
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 0 
Query:   56 TDILSRFREREXXXXXXXXXLVMAGAEARYMSLMDRIKKFLMEKGPRVPTERLLQYFRDVPHTDAVIFKAMLKTVGRLENGAWSLR 142
            TDILSRF  REXXXXXXXXX    GA+ARY+SL++RIKKFL EKGPRVPTE +L++F+ VPH+DAVIFK MLK+VG+L  GAW+LR
Sbjct:  848 TDILSRF--REXXXXXXXXXXXXXGADARYVSLLERIKKFLREKGPRVPTEEVLRHFKHVPHSDAVIFKTMLKSVGKLSRGAWTLR 931
The following BLAST results are available for this feature:
BLAST of NO12G02730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25756.16.800e-2072.09dna excision repair protein ercc-6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL127nonsL127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR009ngnoR009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010231NSK010231Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02730.1NO12G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556533gene_5444Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100162g10gene4765Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02730.1NO12G02730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02730 ID=NO12G02730|Name=NO12G02730|organism=Nannochloropsis oceanica|type=gene|length=1086bp
ATGGCGGCAGCCACAGAAGCAGCAGCAGCGGCGGCGTTCGTGTCATCTTT
GCCGAGGTTTGGACCGCGGGGACGGATAATGGATGCGGGGGCAAGTGGCG
GTGGAGGGGGGGGGGGAGAATCAGGCGTCATGTTTGGAGGGCAGTCAAAT
GCACCTATTAGTTCGACGGATATTTTGTCGAGGTTTCGAGAGAGGGAGGG
AGGAAGTGGAAGAGGAGGAGGAGGGTTAGTGATGGCGGGAGCAGAGGCTC
GGTATATGTCTTTGATGGATCGGATTAAGAAGTTTTTGATGGAAAAGGGG
CCAAGGGTACCAACGGAGCGATTGCTGCAATACTTCCGGGATGTTCCACA
TACGGACGCGGTGATTTTTAAGGCAATGTTAAAGACTGTGGGGAGGTTGG
AGAATGGGGCATGGAGCTTGAGGGAGGAGGAGGAGGAGGGGGGGGGGGGG
GGAGGGGGAGGACGGCGGAGGTAGACGTCCGGAAGGGTTTGTATGTATGT
CTTATAGACAATTGGTTAAGAGGTGAGAGAAAGGGTAATTTAGATTGCTA
TGATGTAGCAAAGGCTTGTGAAGGTCGAGAAGAAAAGAAGTTAATGTGCA
CTCAAAAGTAGAATGCCAAGTTGGAGTCTGTTAATTTTAAGAGAATACAT
AGCAACGGCGAATGAGAAGACACTAAAGCGGTGCCCTTAGAGATGTGCAC
ATTCAATAATACAACTAAAATTTATTTTGCAAAACAAGAAGAAAAATAGA
AATAGAGGCTCATTCCAAAAGGACAAAGCAAGCCAAGCGGAGCAAGTTAG
CGAATACGCTGGGGGGGAGGATAGCATTAATCTTTATCGTGTAGCTCGTG
TTTAATTTGATCTCAATCCTCCTTTGCCAATGCCTCTCCCGTGTCCGATA
CTTCGACTCATAATGGTACTCGCTTGGTGTACACGTTGCGACTTTCTGTG
TACATTTTTCCGAATAGGAAAGCCATGTAAAGTCAACCGCGGAAAGCCAC
CAATAGACCTGGGAGGCGTTTTGCAATACAGCAAAGGAGCATAAGCAAAA
AAGATTAAAAAAACAACCAAAAACAAAGAGAAAGAA
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protein sequence of NO12G02730.1

>NO12G02730.1-protein ID=NO12G02730.1-protein|Name=NO12G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MAAATEAAAAAAFVSSLPRFGPRGRIMDAGASGGGGGGGESGVMFGGQSN
APISSTDILSRFREREGGSGRGGGGLVMAGAEARYMSLMDRIKKFLMEKG
PRVPTERLLQYFRDVPHTDAVIFKAMLKTVGRLENGAWSLREEEEEGGGG
GGGGRRR*
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Synonyms
Publications