NO12G02720, NO12G02720 (gene) Nannochloropsis oceanica

Overview
NameNO12G02720
Unique NameNO12G02720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length696
Alignment locationchr12:762357..763052 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:762357..763052 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G02720 vs. NCBI_GenBank
Match: EWM25767.1 (hypothetical protein Naga_100168g5 [Nannochloropsis gaditana])

HSP 1 Score: 106.3 bits (264), Expect = 1.300e-19
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 0 
Query:  122 IPLTPRQPVETNDTMVLKAAALLMVDVNPVEGKAIGWRVVHADKQSFAAGITYYLQIELRTKSRCEIHEKKVFVEANTGNLIPGGLGDLLPCDPSL 218
            IP +PR+ ++  D +V ++A L M DVNPV G+AIGW++V AD Q F +G  Y LQ+ELRTK+RCE HE  VF +A +  L   G GD++PC+ SL
Sbjct:   90 IPRSPRESIDIGDPIVQESAMLAMTDVNPVVGEAIGWQIVRADTQKFTSGTYYLLQVELRTKTRCEAHEVTVFQDARSQILEKQGSGDIVPCNASL 185
The following BLAST results are available for this feature:
BLAST of NO12G02720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25767.11.300e-1951.04hypothetical protein Naga_100168g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010213NSK010213Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02720.1NO12G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592526gene_5442Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100168g5gene4752Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02720.1NO12G02720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02720 ID=NO12G02720|Name=NO12G02720|organism=Nannochloropsis oceanica|type=gene|length=696bp
ATGCCACGACAACGGCAAGCCCTCCTGCTGACAGTGCTTTTATATGTGCT
TGTCTGGGTAGGGGCCGGTGTCTTGGAGTCTGCGGCTGGAGCATCATCAG
CGCAGGAGGAGCAGCACCAGGATCCGCCGCCAGCTCCCTTACAGCAGGAG
CAGCCGCCGCCGCCGCAAGAGCCAGTACAAGCACCATTCGGAGAGGAAGT
ACAAACGTCCCCACATAGAAATGACCAAGTAGCACCACCAACTAACACAG
TATCCCTCGCTACTCCTGCCGATGACTTAAACCCCCCCACTCCTGCAGAA
GCGGCTATCCCCGCTGTCCCCGCCGCTCCCGATGTAGTGGTGTCCCCCGT
TTCTCCCACCGAAATCCCGCTTACTCCTCGGCAGCCGGTCGAAACCAATG
ATACCATGGTGCTGAAAGCAGCCGCACTCTTAATGGTGGACGTGAACCCG
GTGGAAGGAAAGGCGATTGGTTGGCGTGTTGTGCATGCCGACAAGCAAAG
CTTTGCAGCAGGCATCACTTACTATTTGCAGATTGAGCTACGGACTAAAT
CCCGCTGTGAGATACACGAGAAGAAGGTTTTTGTCGAGGCTAACACGGGG
AATCTTATTCCAGGAGGATTGGGAGACCTGTTGCCTTGCGATCCGTCCTT
ACCGCCCGCCGATTATTTGACTAAAAAAGGGTTGAGGGGAGGGTGA
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protein sequence of NO12G02720.1

>NO12G02720.1-protein ID=NO12G02720.1-protein|Name=NO12G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MPRQRQALLLTVLLYVLVWVGAGVLESAAGASSAQEEQHQDPPPAPLQQE
QPPPPQEPVQAPFGEEVQTSPHRNDQVAPPTNTVSLATPADDLNPPTPAE
AAIPAVPAAPDVVVSPVSPTEIPLTPRQPVETNDTMVLKAAALLMVDVNP
VEGKAIGWRVVHADKQSFAAGITYYLQIELRTKSRCEIHEKKVFVEANTG
NLIPGGLGDLLPCDPSLPPADYLTKKGLRGG*
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Synonyms
Publications