NO12G02710, NO12G02710 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G02710
Unique Name	NO12G02710
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4028
Alignment location	chr12:761562..765589 +

Link to JBrowse

Properties


Property Name	Value
Description	Ap-2 complex subunit mu

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:761562..765589 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0030131	clathrin adaptor complex
GO:0016020	membrane
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport
GO:0006886	intracellular protein transport
GO:0006810	transport

Vocabulary: **INTERPRO**
Term	Definition
IPR011012	Longin-like_dom
IPR036168	AP2_Mu_C_sf
IPR022775	AP_mu_sigma_su
IPR028565	MHD
IPR001392	Clathrin_mu

Homology

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BLAST of NO12G02710 vs. NCBI_GenBank
Match: EWM25769.1 (ap-2 complex subunit mu [Nannochloropsis gaditana])

HSP 1 Score: 812.8 bits (2098), Expect = 5.400e-232
Identity = 402/441 (91.16%), Postives = 417/441 (94.56%), Query Frame = 0

Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKVIENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDENAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTMLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQIVMKALLSGWPECKFGLNDKLIMDREXXXXXXXXXXXXXXXXXXXXNAGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGRAKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFAVRI 442
            MISAIFLVNQKGEVVVNRLYRDDVSR +VDTFRHKVIASKETGSQAP+KVIEN+TFLYIRHHHLYLVAVTRSNLNPALVFEFL+RMVRIFKAYFG+HFDE+AVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPT+LTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVL SDVTGQIVMKALLSGWPECKFGLNDKLIMDRE                    +AGVEIDDCTFHRCVRLG+FDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIK+PVP NTAKT INVSTGRA+FEPEHRA+VWRIKRFPGGCE+MITADVTLMPSTS+KAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSF+VRI
Sbjct:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDRE--------AAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVRI 433

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BLAST of NO12G02710 vs. NCBI_GenBank
Match: EWM25770.1 (ap-2 complex subunit mu [Nannochloropsis gaditana])

HSP 1 Score: 811.2 bits (2094), Expect = 1.600e-231
Identity = 401/440 (91.14%), Postives = 416/440 (94.55%), Query Frame = 0

Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKVIENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDENAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTMLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQIVMKALLSGWPECKFGLNDKLIMDREXXXXXXXXXXXXXXXXXXXXNAGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGRAKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFAVR 441
            MISAIFLVNQKGEVVVNRLYRDDVSR +VDTFRHKVIASKETGSQAP+KVIEN+TFLYIRHHHLYLVAVTRSNLNPALVFEFL+RMVRIFKAYFG+HFDE+AVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPT+LTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVL SDVTGQIVMKALLSGWPECKFGLNDKLIMDRE                    +AGVEIDDCTFHRCVRLG+FDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIK+PVP NTAKT INVSTGRA+FEPEHRA+VWRIKRFPGGCE+MITADVTLMPSTS+KAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSF+VR
Sbjct:    1 MISAIFLVNQKGEVVVNRLYRDDVSRSMVDTFRHKVIASKETGSQAPIKVIENATFLYIRHHHLYLVAVTRSNLNPALVFEFLFRMVRIFKAYFGEHFDESAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTVLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLHSDVTGQIVMKALLSGWPECKFGLNDKLIMDRE--------AAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKVPVPPNTAKTHINVSTGRARFEPEHRALVWRIKRFPGGCEFMITADVTLMPSTSNKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFSVR 432

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BLAST of NO12G02710 vs. NCBI_GenBank
Match: CBN77778.1 (Clathrin assembly complex, medium subunit [Ectocarpus siliculosus])

HSP 1 Score: 608.2 bits (1567), Expect = 2.000e-170
Identity = 294/442 (66.52%), Postives = 357/442 (80.77%), Query Frame = 0

Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKVIENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDENAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQA-EMEQQEPTMLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQIVMKALLSGWPECKFGLNDKLIMDREXXXXXXXXXXXXXXXXXXXXNAGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGRAKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFAVRI 442
            MISAI ++N+KGE+V++R YRDDV+R   D FR +VIASKETGS AP+ +++ +TFLY RH +LYLVAVTR N+NPA+VFEFLY+ +RIFKAYF   FDE+ +RN+ TL+ EL+DETMD+GYPQ  +I+VLR YINLGT+++ + + QE   LTSQITG IDWRR+GIR+RKNEVYIDVLESVN+LMS+ G VLR+DV+G+++MK LLSG P+CKFGLNDKLIM+R+                       V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV +NVNLP R+IPA+QEEGR RV +N+KV+A+FS KLFG N+V+K+PVP NTA+  I+V +GRAK+EPE RAIVWRIKR  GG E + TADV L PS   KAWSRPPIQ EFQVPMFTSSGV VRFL+VYDKSGY T RWVRYITRAG + +RI
Sbjct:    1 MISAILIINRKGEIVISRFYRDDVTRAAADAFRLQVIASKETGSSAPIMLLDGNTFLYTRHLNLYLVAVTRGNVNPAMVFEFLYQKIRIFKAYFKRDFDEDTLRNNMTLILELMDETMDYGYPQILSIDVLRTYINLGTIRSLDGDPQESGQLTSQITGAIDWRREGIRHRKNEVYIDVLESVNLLMSSNGAVLRNDVSGKVIMKTLLSGMPDCKFGLNDKLIMERD-----------ANARGRQDRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRGRVTINLKVSADFSYKLFGSNIVVKVPVPPNTARCLIHVGSGRAKYEPEQRAIVWRIKRMIGGAEAVFTADVELTPSIRGKAWSRPPIQAEFQVPMFTSSGVQVRFLKVYDKSGYLTKRWVRYITRAGHYQIRI 431

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BLAST of NO12G02710 vs. NCBI_GenBank
Match: OEU09432.1 (clathrin adaptor, mu subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 607.1 bits (1564), Expect = 4.500e-170
Identity = 289/442 (65.38%), Postives = 363/442 (82.13%), Query Frame = 0

Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKVIENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDENAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTMLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQIVMKALLSGWPECKFGLNDKLIMDREXXXXXXXXXXXXXXXXXXXXNAGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEE-GRNRVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGRAKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFAVRI 442
            MIS I ++NQKG+++++R YRDDVSR   D+FR +V+A+K TG++APV  IEN++FLY RH +++ VAVTRSN+NPALVFE+LY++VRI K+Y GD FDENA+RN+ TL+YEL+DETMDFGYPQNCA++VL+ YINLG+V+A+ ++ EP+ LTSQITG IDWRR+GIR++KNEVYIDVLESVN+L+S+TG +LR++VTG + M   L+G PECKFGLNDKL++++E                      GVEIDDCTFHRCVRLGKFDADRTITFIPPDGE+ELM+YRVT+N+NLPFR+IP IQEE    ++++N+KV ANFS +LF  +VVIKIPVP NTAK +I  S GRAK+EPE +AIVWR+KRFPG  E  I+ADV LMP+   K WSRPPI  EFQVPMFT+SGVHVRFLRVYDKSGY TNRWVRYIT+AG++ +RI
Sbjct:    1 MISMIMILNQKGDIMISRQYRDDVSRAGADSFRLQVVATKNTGTEAPVVRIENNSFLYTRHLNMFFVAVTRSNVNPALVFEYLYQLVRILKSYLGDEFDENAMRNNMTLIYELMDETMDFGYPQNCAVDVLKLYINLGSVKAQ-DEPEPSQLTSQITGAIDWRREGIRHKKNEVYIDVLESVNLLLSSTGAILRNEVTGAVQMNTKLTGMPECKFGLNDKLVIEKE-----------------GQRKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEYELMKYRVTDNINLPFRIIPTIQEEQSLTKISINLKVIANFSDQLFATHVVIKIPVPKNTAKAKIKHSFGRAKYEPEQQAIVWRVKRFPGKAECHISADVDLMPTVRPKIWSRPPINCEFQVPMFTASGVHVRFLRVYDKSGYHTNRWVRYITKAGNYQIRI 424

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BLAST of NO12G02710 vs. NCBI_GenBank
Match: XP_002177952.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50766.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 602.1 bits (1551), Expect = 1.400e-168
Identity = 285/442 (64.48%), Postives = 361/442 (81.67%), Query Frame = 0

Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKVIENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDENAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTMLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQIVMKALLSGWPECKFGLNDKLIMDREXXXXXXXXXXXXXXXXXXXXNAGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRN-RVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGRAKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFAVRI 442
            MIS I ++NQKG+++++R YRDDV R   D+FR +V+A+KETG++APVK IEN +FLY RH ++Y VA+TRSN+NPALVFE+L+++++I KAY G+ FDE A+RN+ TL+YEL+DETMDFGYPQNCA++VLR YINLGT + + ++ EP+ LTSQITG IDWRR+GIR++KNEVYIDVLESVN+L+S+TGNVLR++V G + M   L+G PECKFGLNDKL+++++                       V+IDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVT+N+NLPFR+IPA+QE   N +V++++KV ANFS +LF  +VVIKIPVP NT+KT+I  S GRAK+EPE +AIVWR+KRF G  + +I A+V LMP+  S+ WSRPPI VEFQVPMFT SGVHVRFLRVYDKSGY TNRWVRYIT+AGS+ +RI
Sbjct:    1 MISMIMVLNQKGDIMISRQYRDDVGRAAADSFRLQVVAAKETGTEAPVKRIENCSFLYTRHLNMYFVALTRSNVNPALVFEYLFQLIKILKAYLGEEFDETAMRNNMTLIYELMDETMDFGYPQNCAVDVLRLYINLGTAKPQ-DEPEPSKLTSQITGAIDWRREGIRHKKNEVYIDVLESVNLLLSSTGNVLRNEVAGSVQMNTKLTGMPECKFGLNDKLVIEKD----------------KEDRKPSVDIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRIIPAVQESQNNTKVSIDLKVIANFSDQLFATHVVIKIPVPKNTSKTKIKHSFGRAKYEPEQQAIVWRVKRFAGKAQCIINAEVDLMPTVRSQPWSRPPINVEFQVPMFTGSGVHVRFLRVYDKSGYHTNRWVRYITKAGSYQIRI 425

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BLAST of NO12G02710 vs. NCBI_GenBank
Match: EJK48489.1 (hypothetical protein THAOC_32705 [Thalassiosira oceanica])

HSP 1 Score: 600.5 bits (1547), Expect = 4.200e-168
Identity = 280/441 (63.49%), Postives = 358/441 (81.18%), Query Frame = 0

Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKVIENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDENAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTMLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQIVMKALLSGWPECKFGLNDKLIMDREXXXXXXXXXXXXXXXXXXXXNAGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGRAKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFAVRI 442
            MIS+I ++N +GE++++R YRDDVSR   D+FR +VIA+KE  SQ P+K IEN +FLY RH ++Y VA+T++N+NPALVFE+LY+ +R+ KAY G+ FDEN++RN+ TL+YEL+DETMDFGYPQNCA++VLR YINLG V+ + ++ EP  LT QITG IDWRR+GIR++KNEVYIDVLESVN+L+S+ GNVLRS+VTG++ M   L+G PECKFGLNDKL++++                     N+GVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRV +NVN+PFRLIPA+QEEG+ + ++N+KV ANFS KLF  +VVI++PVP NT+K++I  S GRAK+EPE  AIVWRIK+FPG  E M++AD+ L+ +   K+W RPPI VEFQVPMFT+SGVHVRFLRVYDK+GY TNRWVRYIT+ G + ++I
Sbjct:    1 MISSIMILNARGEIMISRQYRDDVSRVAADSFRIQVIAAKEASSQPPIKRIENCSFLYTRHLNMYFVALTKANVNPALVFEYLYQKIRVLKAYLGEDFDENSMRNNMTLIYELMDETMDFGYPQNCAVDVLRLYINLGDVKPQ-DEPEPAQLTKQITGAIDWRREGIRHKKNEVYIDVLESVNLLISSAGNVLRSEVTGRVQMNTKLTGMPECKFGLNDKLVIEKS---------------SEGRKNSGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVNDNVNMPFRLIPAVQEEGQTKCSINLKVIANFSEKLFATHVVIRVPVPKNTSKSKIKNSFGRAKYEPEQNAIVWRIKKFPGKAECMLSADMELVRTVRPKSWERPPISVEFQVPMFTASGVHVRFLRVYDKAGYHTNRWVRYITKGGGYQIKI 425

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BLAST of NO12G02710 vs. NCBI_GenBank
Match: XP_002288778.1 (clathrin adaptor complex subunit [Thalassiosira pseudonana CCMP1335] >EED94214.1 clathrin adaptor complex subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 593.6 bits (1529), Expect = 5.100e-166
Identity = 280/441 (63.49%), Postives = 354/441 (80.27%), Query Frame = 0

Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKVIENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDENAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTMLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQIVMKALLSGWPECKFGLNDKLIMDREXXXXXXXXXXXXXXXXXXXXNAGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGRAKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFAVRI 442
            MIS I ++NQKGE++++R YRDDVSR   D+FR +VIA+KE  SQ P+K IEN +FLY RH ++Y VA+T+SN+NPALVFE+L++ +R+ KAY G+ FDEN++RN+ TL+YEL+DETMDFGYPQNCA++VLR YINLG V+ + ++ EP  LT QITG IDWRR+GIRY+KNEVYIDVLESVN+L+S++G+VLR++VTG++ M   L+G PECKFGLNDKL++++E                       V I+DCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRV +NVN PF+L PA+QEEG+ + ++N+K+ A FS KLF  +VV+KIPVP NT+KT+I  S GRAK+EPE  AIVWRIKRFPG  E M++AD+ L+ +   KAW RPPI VEFQVPMFT+SGVHVRFLRV+DKSGY TNRWVRYIT+AG + +RI
Sbjct:    1 MISMIMVLNQKGEIMISRQYRDDVSRVAADSFRLQVIAAKEASSQPPIKRIENCSFLYTRHLNMYFVALTKSNVNPALVFEYLFQKIRVLKAYLGEEFDENSMRNNMTLIYELMDETMDFGYPQNCAVDVLRLYINLGNVKPQ-DEPEPEQLTKQITGAIDWRREGIRYKKNEVYIDVLESVNLLISSSGSVLRNEVTGRVQMNTKLTGMPECKFGLNDKLVIEKESSAARKKTL--------------VNINDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVNDNVNRPFKLFPAVQEEGQTKCSINLKMVAEFSEKLFATHVVVKIPVPKNTSKTKIKNSFGRAKYEPEQNAIVWRIKRFPGKAECMLSADLELVRTVRPKAWERPPINVEFQVPMFTASGVHVRFLRVFDKSGYHTNRWVRYITKAGGYQIRI 426

[Close]

BLAST of NO12G02710 vs. NCBI_GenBank
Match: GAX23207.1 (AP-2 complex subunit mu-1 [Fistulifera solaris] >GAX10416.1 AP-2 complex subunit mu-1 [Fistulifera solaris])

HSP 1 Score: 587.8 bits (1514), Expect = 2.800e-164
Identity = 281/428 (65.65%), Postives = 348/428 (81.31%), Query Frame = 0

Query:   15 VVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKVIENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDENAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPTMLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQIVMKALLSGWPECKFGLNDKLIMDREXXXXXXXXXXXXXXXXXXXXNAGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGR-NRVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGRAKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFAVRI 442
            +++R YRDDV R   D+FR +V+A+KETG+ AP+K IEN +FLY RH ++Y VA+TRSN+NPALVFE+L+++V+I KAY G+ FDENA+RN+ TL+YEL+DETMDFGYPQNCA++VLR YINLG V+ + ++ EP+ LTSQITG IDWRR+GIR++KNEVYIDVLESVN+L+S+TG+VLR++V G + M   L+G PECKFGLNDKL++D++                       VEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELM YRVT+N+NLPFR+IPA+QEE    +V++NVKV A+FS +LF  +VVIKIPVP NT+K +I  S GRAK+EPE  AIVWR+KRF G  E +ITADV LMP T  K WSRPPIQ+EFQVPMFT+SGVHVRFLRVYDKSGY TNRWVRYIT+AG++ +RI
Sbjct:    1 MISRQYRDDVGRAAADSFRLQVVAAKETGTDAPIKRIENCSFLYTRHLNMYFVAMTRSNVNPALVFEYLFQLVKILKAYLGEEFDENAMRNNMTLIYELMDETMDFGYPQNCAVDVLRLYINLGNVKPQ-DEPEPSQLTSQITGAIDWRREGIRHKKNEVYIDVLESVNLLLSSTGSVLRNEVQGAVQMNTKLTGMPECKFGLNDKLVIDKD----------------KGDGKQTVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMHYRVTDNINLPFRVIPAVQEENNMTKVSINVKVIASFSDQLFATHVVIKIPVPKNTSKAKIKNSFGRAKYEPEQNAIVWRVKRFAGKAECIITADVDLMPMTRPKPWSRPPIQLEFQVPMFTASGVHVRFLRVYDKSGYHTNRWVRYITKAGNYQIRI 411

[Close]

BLAST of NO12G02710 vs. NCBI_GenBank
Match: CCI42630.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 575.9 bits (1483), Expect = 1.100e-160
Identity = 273/443 (61.63%), Postives = 347/443 (78.33%), Query Frame = 0

Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKVIENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDENAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAE--MEQQEPTMLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQIVMKALLSGWPECKFGLNDKLIMDREXXXXXXXXXXXXXXXXXXXXNAGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGRAKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFAVRI 442
            MISA+FL+ QKGE+V++R YRDDVSR+  DTFR +VIA+KETGS  P+K I+  +FLY RH +LYLVAVTR+N+N ALVF+FLY++  IFK YFG  + E ++R++FTLVYELLDET+D+GYPQNC+I+VL+ YINLG++ +       +P+ LTSQITG IDWRR+GI+Y++NEVY+DV ESVN+LMS+ G VLR++V GQ+VMK  L+G PECK GLNDKLIM +                        VEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELM+YRVTENVNLPF+++PA QE+G  R++V +K+ A FS +LF  N+VIKIP P NTA+ +IN   GRAK EPE+ AIVWR+++F G  E M+ A+V ++ ST  K WSRPPIQ+EFQVPMFTSSG+HVRFL+V++K  YQT +WVRY+TRAG + +RI
Sbjct:    1 MISALFLLGQKGEIVLHRFYRDDVSRRAADTFRMQVIAAKETGSLPPIKHIDGCSFLYTRHENLYLVAVTRANINTALVFQFLYQLNGIFKEYFGKKYSEESIRDNFTLVYELLDETVDYGYPQNCSIDVLKMYINLGSLSSSDGPLATQPSQLTSQITGAIDWRREGIKYKRNEVYLDVFESVNLLMSSNGTVLRNEVAGQVVMKTSLTGMPECKLGLNDKLIMQK-------GDAAGSKIPGQKRATRDVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMKYRVTENVNLPFKIMPAYQEQGTTRLSVTLKIAATFSPRLFATNLVIKIPTPPNTARARINAPIGRAKHEPENHAIVWRVRKFQGKLERMLDAEVEMLKSTREKVWSRPPIQIEFQVPMFTSSGLHVRFLKVFEKGSYQTTKWVRYVTRAGQYQLRI 436

[Close]

BLAST of NO12G02710 vs. NCBI_GenBank
Match: CCA23532.1 (AP2 complex subunit mu putative [Albugo laibachii Nc14])

HSP 1 Score: 574.7 bits (1480), Expect = 2.500e-160
Identity = 275/443 (62.08%), Postives = 345/443 (77.88%), Query Frame = 0

Query:    1 MISAIFLVNQKGEVVVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKVIENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDENAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAE--MEQQEPTMLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQIVMKALLSGWPECKFGLNDKLIMDREXXXXXXXXXXXXXXXXXXXXNAGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGRAKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQVPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFAVRI 442
            MISA+FL+ QKGE+V++R YRDDVSR+  DTFR +VIA+KETGS  PVK I+  +FLY RH +LYLVAVTR+N+N ALVF+FLY++  IFK YFG  + E ++R++FTLVYELLDET+D+GYPQNC+I+VL+ YINLG++         +P+ LTSQITG IDWRR+GI+Y++NEVY+DV ESVN+LMS+ G VLR++V GQIVMK  L+G PECK GLNDKLIM +                        VEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELM+YRVTENVNLPF+++PA QE G  R++V +K+ A FS +LF  N+VIKIP P NTA+ +IN   GRAK EPE+ AIVWR+++F G  E M+ A+V ++ ST  K WSRPPIQ+EFQVPMFTSSG+HVRFL+V++K  YQT +WVRY+TRAG + +RI
Sbjct:    1 MISALFLLGQKGEIVLHRFYRDDVSRRAADTFRMQVIAAKETGSLPPVKHIDGCSFLYTRHENLYLVAVTRANINTALVFQFLYQLNGIFKEYFGKKYSEESIRDNFTLVYELLDETVDYGYPQNCSIDVLKMYINLGSLSNSDGPLSTQPSQLTSQITGAIDWRREGIKYKRNEVYLDVFESVNLLMSSNGTVLRNEVAGQIVMKTSLTGMPECKLGLNDKLIMQK-------GDGAGSKIPGQKRATRDVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMKYRVTENVNLPFKIMPAYQESGTTRLSVTLKIAATFSPRLFATNLVIKIPTPPNTARARINAPIGRAKHEPENHAIVWRVRKFQGKLERMLDAEVEMVKSTREKVWSRPPIQIEFQVPMFTSSGLHVRFLKVFEKGSYQTTKWVRYVTRAGQYQLRI 436

The following BLAST results are available for this feature:

BLAST of NO12G02710 vs. NCBI_GenBank

BLAST of NO12G02710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM25769.1	5.400e-232	91.16	ap-2 complex subunit mu [Nannochloropsis gaditana]	[more]
EWM25770.1	1.600e-231	91.14	ap-2 complex subunit mu [Nannochloropsis gaditana]	[more]
CBN77778.1	2.000e-170	66.52	Clathrin assembly complex, medium subunit [Ectocar...	[more]
OEU09432.1	4.500e-170	65.38	clathrin adaptor, mu subunit [Fragilariopsis cylin...	[more]
XP_002177952.1	1.400e-168	64.48	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
EJK48489.1	4.200e-168	63.49	hypothetical protein THAOC_32705 [Thalassiosira oc...	[more]
XP_002288778.1	5.100e-166	63.49	clathrin adaptor complex subunit [Thalassiosira ps...	[more]
GAX23207.1	2.800e-164	65.65	AP-2 complex subunit mu-1 [Fistulifera solaris] >G...	[more]
CCI42630.1	1.100e-160	61.63	unnamed protein product [Albugo candida]	[more]
CCA23532.1	2.500e-160	62.08	AP2 complex subunit mu putative [Albugo laibachii ...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL125	nonsL125	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL124	nonsL124	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR015	ncniR015	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR014	ncniR014	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR007	ngnoR007	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR006	ngnoR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK010214	NSK010214	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO12G02710.1	NO12G02710.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO12G02710.2	NO12G02710.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592529	gene_5443	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
APM2	gene4753	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO12G02710.1	NO12G02710.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO12G02710.2	NO12G02710.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence

gene sequence

>NO12G02710 ID=NO12G02710|Name=NO12G02710|organism=Nannochloropsis oceanica|type=gene|length=4028bp
GCATCATCTTAACTTCATTGCCATCTTTTTTATATCATTCCATTGCAGTG
ACTTTCCCCCTTTATTGCAAAGGTTCTTTTTATCGCTCAATTACCCTTCA
ATCTGTGCGGATTTCCTCGCGCTTTTGGACCGGAACTATATCTGTGCTCT
GACACACAGACTATTCCGTCTGTGTGTGCGTGATGTGCGCCCTTGCTCAC
ACATATATGTATCTTCTTGCTTTGTCCTTATTTAATGTCATGATCGTTCA
TGCAACCGCTCGATTTTTTTCTTAGTTACTCTCCGTCACACGCATACACA
CACACGCAACGCGTCTCCGCTCGAGCTGCCAGTGAAATATATTTTGATTC
TCTCGAGCATCTCCGATACAACTTTCTTTTCACGGACGTCTCGTCATACG
TTCACAGCTCTCTGCTTTGAGTGGCCTTTTCTCTGCTAACATCATTCACT
CGTACCGGCCCTCGACGGACACTCGTATATTGCTTATGCCCCATGCACGG
ATGCCTCATTTTTACCTGTCGATTCATCTCCAGTCTAGAGCCCGCTACAA
CATTCTCATGCATATTTGTGGCACCCTCCTCCTTTCCTTCCTGCTTCTTT
GTCATACTGGAGTTCGGACCTACATCCATAGCGCCCGCCTCCCCCTTCCA
TCGACACCTCCTTGCAATGTTATTTCCCTTTTATATCTCGTCCGACAAGA
TTAAAATATCAAGAGTCCCCCAATTTTATTCACTCGCCGAATTCTTTCAA
TCCCATTTTTCTTTTCCTTTTTCTCTCCACTACTGCTTCCCACCATCACC
CTCCCCTCAACCCTTTTTTAGTCAAATAATCGGCGGGCGGTAAGGACGGA
TCGCAAGGCAACAGGTCTCCCAATCCTCCTGGAATAAGATTCCCCGTGTT
AGCCTCGACAAAAACCTTCTTCTCGTGTATCTCACAGCGGGATTTAGTCC
GTAGCTCAATCTGCAAATAGTAAGTGATGCCTGCTGCAAAGCTTTGCTTG
TCGGCATGCACAACACGCCAACCAATCGCCTTTCCTTCCACCGGGTTCAC
GTCCACCATTAAGAGTGCGGCTGCTTTCAGCACCATGGTATCATTGGTTT
CGACCGGCTGCCGAGGAGTAAGCGGGATTTCGGTGGGAGAAACGGGGGAC
ACCACTACATCGGGAGCGGCGGGGACAGCGGGGATAGCCGCTTCTGCAGG
AGTGGGGGGGTTTAAGTCATCGGCAGGAGTAGCGAGGGATACTGTGTTAG
TTGGTGGTGCTACTTGGTCATTTCTATGTGGGGACGTTTGTACTTCCTCT
CCGAATGGTGCTTGTACTGGCTCTTGCGGCGGCGGCGGCTGCTCCTGCTG
TAAGGGAGCTGGCGGCGGATCCTGGTGCTGCTCCTCCTGCGCTGATGATG
CTCCAGCCGCAGACTCCAAGACACCGGCCCCTACCCAGACAAGCACATAT
AAAAGCACTGTCAGCAGGAGGGCTTGCCGTTGTCGTGGCATGCTTGCTTG
CGGAGAGTTGCGATGGACGGGTCGTAGATGGTTTAGGGTTCGGACAAATC
GCACCCCTGTGTGGGGTATTTTTGAAGGATGAGGGCACAGAAAGTCAAAT
AAATCGAGATATCAGCAGTCTCTCTAGGAAAGGGCAAGATAAGCTGCAAC
AATGAGCTTCGCTTGGTTTTGAGAGATCGCAGAGTTTTGATTGCAGGGCA
GAACAAGATCCACGATGCAGGTGCTATATCGTGAGAACACTTCACATCTT
GAACCATGGGCTCTCCCCTGTTCTCCCACCTTTGTCCCAAAGCCTGAACA
TAACCCAACATCCAAACCCTTCACTAGCACCATAAACAAATGATTCAGAT
GCGTGTGTGCACTGAAAGTAAATCTGGGGCTCTGGGTTGATTTGTTAGCC
AATAGCCCTCAACCACCATCGAGTCGATCGCTAACGCCTCCTTTTCGTCA
TTGCCGATGCCTTCAGGAAGTTCTTCTTGTCCGACGTCTCACGCCACCTT
CCCACACCTCATCACACAGGCGCCAGCTGGCCCGAGGAGGTACTTAGCCG
GCGTCCGAGATCAGAGGCGACTTATCGGGCCAGTGGTCACAAGCCCTCCC
CTTTCTCAGCCCAATCCTACATCCCCCACCTGAGCAGCAGCATTACACTC
CTTGCCCTTTCCCCAACACTTTCGACCGATGATCTCAGCCATCTTTCTGG
TCAACCAAAAAGGGGAGGTGGTAGTTAATCGGCTGTACCGCGACGATGTG
AGTCGGCAAGTAGTGGACACTTTTCGGCACAAGGTTATTGCATCCAAGGA
GACCGGCTCCCAAGCCCCGGTCAAAGTCATCGAGAACTCCACCTTCTTGT
ACATCCGCCACCACCATCTCTACCTCGTCGCCGTCACCCGCTCCAACCTG
AACCCTGCTTTGGTTTTTGAGTTTTTGTACCGAATGGTCCGCATTTTCAA
GGCGTATTTCGGGGACCATTTCGATGAGAACGCGGTGCGAAATCATTTTA
CCCTCGTGTACGAGCTGCTGGACGAGACGATGGACTTTGGATACCCACAG
AACTGCGCCATTGAGGTCTTACGGCAGTACATCAACTTAGGTACTGTCCA
GGCGGAGATGGAGCAGCAGGAACCGACCATGTTGACCTCGCAAATTACGG
GTCAGATTGATTGGAGGCGGGATGGGATTCGATATCGGAAAAATGAGGTG
TATATCGACGTATTGGAGAGCGTGAACATTCTCATGTCGGCCACGGGCAA
TGTCTTGCGTTCGGATGTCACGGGGCAGATTGTGATGAAGGCTTTGTTGT
CAGGATGGCCCGAGTGTAAGTTCGGGTTGAATGACAAGTTAATCATGGAC
AGGGAGGCGGCCAGCAAGGCTGCTGCTGCTGCTGCTGCGGCTGCGGGTGG
GACGGTGACACGACGGAATGCAGGGGTGGAAATCGATGATTGTACTTTCC
ATCGGTGTGTGCGGTTGGGGAAGTTTGATGCGGACCGGACGATTACCTTC
ATTCCGCCTGATGGGGAGTTTGAATTAATGCGCTACAGGGTGACGGAGAA
TGTGAATTTGCCTTTCAGGTTGATCCCGGCGATTCAGGAAGAGGGACGGA
ATAGGGTAGCGGTCAATGTAAAGGTCACTGCTAATTTCAGTTCGAAATTG
TTTGGGCAGAATGTGGTGATAAAAgtaagtgacgcagggagggaggggag
tgagggagggagagagggagatgtttctgtcgacattcccatcgtccctc
ttcacttgaaaaacattcacttttcactcaccacctctttgtcgccccta
tctccaactatctagATCCCCGTGCCTCTCAACACGGCCAAAACCCAAAT
TAACGTGTCCACGGGCCGCGCCAAATTTGAGCCTGAGCACCGCGCTATCG
TCTGGCGAATCAAACGCTTCCCCGGTGGCTGCGAATACATGATCACGGCA
GATGTGACCCTCATGCCAAGCACCAGCAGCAAGGCCTGGTCAAGGCCTCC
TATTCAAGTCGAGTTTCAAGTCCCCATGTTCACATCATCGGGGGTGCATG
TCAGGTTTTTAAGAGTGTATGATAAGAGTGGATgtaagtagggagggagg
gagggaggtgggggagtttggatcctctaacgccaacacaggatttcaat
acttattaagacttattttgatccctgtgtcattttcttccctataaata
ttccggtgtttcagACCAGACCAATCGGTGGGTGCGCTATATCACAAGGG
CAGGGTCATTTGCGGTGCGCATTTAGAGTCGGCGGAGCCTAGCGAGGAGG
TGTGGGAAGATGAGACAGGGCAATAAAAAGAATAAGGGTGTTCATGAAGG
ACGTGTATGTAAATGTACTGGGAAAAAGCTGGGAATGAAATGGAGCAGGA
ATGAGGTGACGAGGTCTGGGGAGGGGAAAGGGAAAGGACGGGGAGCATGT
GGAGTGAGATGCTTGCAAGGAAAGGATCCGAGACTGTTTTCCCCCCTATA
ACAAAGAGAAAGGAATAAAGACAGTCCT

protein sequence of NO12G02710.1

>NO12G02710.1-protein ID=NO12G02710.1-protein|Name=NO12G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MISAIFLVNQKGEVVVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKV
IENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDE
NAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPT
MLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQ
IVMKALLSGWPECKFGLNDKLIMDREAASKAAAAAAAAAGGTVTRRNAGV
EIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIP
AIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGR
AKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQ
VPMFTSSGVHVRFLRVYDKSGYQTNRWVRYITRAGSFAVRI*

protein sequence of NO12G02710.2

>NO12G02710.2-protein ID=NO12G02710.2-protein|Name=NO12G02710.2|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MISAIFLVNQKGEVVVNRLYRDDVSRQVVDTFRHKVIASKETGSQAPVKV
IENSTFLYIRHHHLYLVAVTRSNLNPALVFEFLYRMVRIFKAYFGDHFDE
NAVRNHFTLVYELLDETMDFGYPQNCAIEVLRQYINLGTVQAEMEQQEPT
MLTSQITGQIDWRRDGIRYRKNEVYIDVLESVNILMSATGNVLRSDVTGQ
IVMKALLSGWPECKFGLNDKLIMDREAASKAAAAAAAAAGGTVTRRNAGV
EIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIP
AIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKIPVPLNTAKTQINVSTGR
AKFEPEHRAIVWRIKRFPGGCEYMITADVTLMPSTSSKAWSRPPIQVEFQ
VPMFTSSGVHVRFLRVYDKSGCK*

Synonyms

Publications