NO12G02540, NO12G02540 (gene) Nannochloropsis oceanica

Overview
NameNO12G02540
Unique NameNO12G02540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3081
Alignment locationchr12:722496..725576 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:722496..725576 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G02540 vs. NCBI_GenBank
Match: EWM25777.1 (hypothetical protein Naga_100176g5 [Nannochloropsis gaditana])

HSP 1 Score: 515.0 bits (1325), Expect = 5.400e-142
Identity = 373/1022 (36.50%), Postives = 521/1022 (50.98%), Query Frame = 0 
Query:   13 MLAMDTQGLQRDRLLHVRVLREREAEGQANDASVIVTKGRFSEEKRRFIERSETFTLPAGSSDPCNIKVLALDQVLNHMSNRLCICFVVRAETCKNATLALCRLVEGDDADNVIQPEKGGGGSGRRSKRVIWEVLEGGDEAWSVDTFNFAVVPGPCILAWKPVYESSNKQGPRVHCWYRKKWHVYPLRTASDATDDIVNISFQGSSTQIDGGFIFRVKSHLSPSTFAWSVLELPPFSTAXXXXXXXXXXXXDHINTANFPSSPYTWLPASALEGCACVCEPLA-FNFNNDQDTNFSGVYMASSTELSFLSSSHKPPEEPVCLAQFPSLSRPA-RACALLARPQPHENAPAAAENEKETTNAEVIEHVVVLFGGDAQDPVGRLMLFARVCFYNLNKHKXXXXXXXXXXXXXXXXXELHPLREFQGLAGMLRGDFLGYGWDQLALLPSSSSTLDG--------MGEVALTDLVHVWGPAGHCKLEDAPVKLLEDKAAFRAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTEAEGETKERVLGKIRDALRQRLHDEEAEKRGLAQVEAQKRLLLMESERILTSMAYQDVLPSTSRLEDVGGDGGSXXXXXXXXXXXEGIVGSTTFAASLRPLLKASDGSDKEQAAFCGQRQAAPLFPIASHQIVRQEVDADSQRVALEVILFLSHKSRRLRLEELSLAVFSQHGPVTFTSSTIKDSGNAITTGHKTGNDEEVRQCVRLQVTFTLSAAALLDPLTWVGEVTLCCAWRRLTWKEGENEEVEEEEMVYPPGAQPLEQLTFCAREFDGASISSGISSSRCTIGGEDLSFXXXXXXXXXXXXPLLWRLEATVLSSCANLSIPLSWSSRIASARLDPMESTYHLAAIDLPTLCTTLHNILXXXXXXXXXXXXXXXXXXXXSLVPSDLI--QPASSFLRGLAWAVALLQEELELLCTLVEGGEPKAGTIRDVWLAQPALDMAVYVLANLCLL 1023
            ML +D+QGL+ DRLLHV  L+ ++   ++++ SV VTKGRFS ++RRFIER + F++   +S      VLA +QV+N+++    +CFV+  E         C        D      +  GG GR S+R+    L GG      D  +  +V GP I  WK V  +S  +G RV  W   KW  Y L    +      +I+FQG    ++G ++FR +   S ST+ WSV+   P  +A                     + PY WLP +AL  CAC+CEP   ++    +D   + +Y+ S+ ELSF +SSH PPE P+C A   + + PA + CALL R          A + +   +   IE VVVL    A+DP  RL+LF R       +H                  EL PLREF G+ G+LRGDFLG GW+QLALLP  S             M E ALTDLVHVW      KL+DAP KL EDK   R+A                                                                     E   E +ERVL K R+A+R+RL  EE  +R L +  A  +LLL E + +LT MAY+DVLP                         EG+    +FAASL PL   + G ++    +   R A+PL P+A+H+I+ Q +DAD+ R++L++ L L+  + R+RL+ ++LAVFS+ GP+TFTSSTI DS     T  K G +++    +RL V+F +SAA+LL+P +W G VTLCCAWR LTW+ GE+E  +EE + YPPGAQ L++LT  A +     ++S   +   + GG++L              PLLW+L+A VLS        +S SSR+A+  LD + +T H+AA+DLPTLC TL +++                     LVP+DL      S FL+GL   + LLQ+E +L+CTLVEGG+P+  +IRDVWLAQPALD+ V+VL+ LCLL
Sbjct:   15 MLVIDSQGLRTDRLLHVE-LQTQDGGSKSSELSVRVTKGRFSVDRRRFIERGDEFSMD-NASIKGKFNVLAFNQVVNYVTGCGVVCFVLHIEGRDGPCELYC-------LDRESAAGEKAGGQGRPSQRLTCTTLSGGMPLPPND-LSMEIVAGPRIFVWKDVQTTS--KGARVSSWLEGKWTEYSL--YGEERQGCGSITFQGIYPPVEGSYLFRTELLSSSSTYLWSVILPAPSESASVPPDKPGLL---------LAAPPYPWLPKAALSDCACLCEPAGDWHSEGTEDATTASLYIVSTHELSFHASSHLPPERPLCRACLDTSTGPATQVCALLTR----------ACDAEGRLDESAIEQVVVLM---ARDPRMRLLLFVR-------RHS----------GPGAQKQELQPLREFCGVGGILRGDFLGSGWEQLALLPGRSQGGPASAPRRPWRMAEAALTDLVHVWVHKASLKLQDAPDKLFEDKEGLRSAGKKRGVAAGCPANEEGGELVAPIGREMERDKPARNGANAQRRG-------------------------CEGSIEQEERVLCKFREAVRERLASEERRERRLQKTTAGSQLLLREGQAVLTDMAYKDVLPHV--------------VVPPHAEESEGL----SFAASLEPL--GARGQEEASNDWRDSR-ASPLLPVATHRIMHQYLDADAHRISLDLSLRLAEPA-RVRLQHVALAVFSRDGPLTFTSSTISDS----LTHEKGGANKDE---LRLAVSFLVSAASLLNPTSWEGSVTLCCAWRTLTWR-GESE--DEEPLAYPPGAQALQRLTVSASDL----LASSFRAKHDSDGGQNL----------LTSLPLLWKLDALVLSPLLAPKDSVSLSSRLAAVHLDAVRNTCHVAAVDLPTLCITLRSLV-----EQNQEDRLNISSCPLKLVPADLSGRNRKSCFLKGLMLFLKLLQQEFDLICTLVEGGQPEESSIRDVWLAQPALDVTVHVLSKLCLL 907
The following BLAST results are available for this feature:
BLAST of NO12G02540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25777.15.400e-14236.50hypothetical protein Naga_100176g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010191NSK010191Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02540.1NO12G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592466gene_5422Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100176g5gene4739Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02540.1NO12G02540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02540 ID=NO12G02540|Name=NO12G02540|organism=Nannochloropsis oceanica|type=gene|length=3081bp
ATGGCAGCCTGCTTACCCCATGCATTGCACTCCATGATGCTGGCTATGGA
CACTCAAGGCCTGCAAAGGGATCGGCTCTTGCATGTGCGCGTCCTTCGCG
AGAGAGAAGCTGAAGGTCAAGCCAATGATGCTTCTGTGATAGTTACCAAG
GGACGATTCAGTGAGGAGAAGCGGCGCTTCATTGAACGCAGCGAGACCTT
CACTCTGCCTGCTGGTTCTTCTGACCCATGCAACATAAAAGTACTCGCAT
TGGACCAAGTTCTTAATCATATGAGTAATCGACTATGCATATGCTTCGTA
GTCCGTGCAGAAACGTGTAAGAACGCTACTTTGGCACTCTGTCGGCTGGT
GGAGGGCGACGACGCGGACAACGTTATACAGCCAGAAAAAGGTGGCGGGG
GCAGTGGCCGGCGCTCAAAGCGCGTGATATGGGAGGTATTGGAAGGGGGG
GATGAGGCGTGGTCTGTGGACACATTTAACTTTGCAGTGGTGCCAGGGCC
GTGTATTTTGGCGTGGAAACCTGTGTACGAGAGCTCGAACAAGCAAGGCC
CCCGCGTGCACTGTTGGTACAGGAAGAAATGGCATGTGTACCCACTACGC
ACAGCGAGTGATGCGACGGACGACATCGTCAATATCTCATTTCAGGGGAG
CAGTACGCAAATCGATGGCGGTTTTATTTTTCGGGTGAAGTCGCATTTGT
CTCCATCCACCTTTGCGTGGAGCGTCCTCGAGCTGCCGCCTTTCTCCACT
GCCTCCTCTTCTTCCTCCACCACCTTTTCTTCATCATCCGACCATATCAA
CACCGCCAACTTTCCCTCTTCGCCCTACACGTGGCTTCCAGCATCCGCTT
TGGAAGGCTGCGCTTGTGTATGTGAGCCACTAGCGTTCAATTTCAACAAC
GACCAGGACACTAATTTCTCTGGGGTTTATATGGCCAGCAGCACTGAGCT
CTCTTTCCTCTCCTCTTCTCACAAGCCGCCCGAAGAACCTGTGTGTCTCG
CTCAATTCCCATCTCTCTCCCGACCGGCGCGGGCATGTGCATTGTTGGCC
CGACCACAACCACACGAGAACGCTCCTGCCGCCGCTGAGAATGAGAAGGA
GACGACGAATGCGGAAGTTATAGAACACGTGGTCGTCCTCTTCGGCGGCG
ATGCCCAGGACCCCGTAGGACGGCTCATGCTTTTTGCCCGCGTCTGTTTT
TACAATCTGAATAAGCATAAGCACCACCATCGACAAGTAAAAGAACAACA
AGAACAAGGAGAAGAAAAACAAGAACTACATCCCCTCCGAGAATTCCAGG
GCCTTGCTGGCATGTTGCGTGGTGATTTTTTGGGATACGGCTGGGACCAG
CTAGCCCTCCTTCCCTCTTCTTCCTCGACTTTGGATGGCATGGGTGAGGT
AGCCCTTACCGACCTAGTGCACGTTTGGGGGCCAGCAGGTCATTGCAAAT
TAGAAGATGCGCCAGTGAAGCTCTTGGAAGACAAAGCTGCATTTCGTGCC
GCGGATAAGGCGAGAAAAAAGGCGGCAGCAGCAGCATTCACATCGAAAGG
AGGAGGTCATGAAAACACACAGGTACGTACGACGAAAAAAAAAAAGAAGA
AGATGAAGAAGGGGGAAAAGCGGCATTTGGTAGAGGAGCGATTTGTAGCG
GAAGAAAAGAGAGATTGGAAAGATGGAGAAGAAAGTGGAGCAGCAGCAGC
AGCTCCAACAGAAGCAGAGGGAGAGACGAAGGAACGAGTACTGGGCAAGA
TCCGAGACGCCTTGCGGCAGCGGTTGCATGACGAGGAAGCCGAGAAACGC
GGGTTAGCGCAGGTAGAGGCGCAAAAGCGACTTTTGTTAATGGAAAGTGA
GAGAATCCTGACCTCTATGGCTTATCAAGACGTCCTTCCCTCTACATCTA
GACTGGAAGATGTTGGTGGCGATGGTGGTAGTGGTTGTGGTGGTGATGGG
GGTGTAGGTGAAGGAGAAGGAATAGTCGGTTCAACGACATTTGCCGCCAG
CTTGCGGCCTCTTTTAAAGGCTAGTGATGGGAGCGACAAAGAGCAAGCGG
CATTCTGTGGACAACGACAGGCTGCGCCTTTGTTCCCCATCGCCAGTCAT
CAGATAGTACGGCAAGAGGTTGATGCGGACTCTCAGCGCGTGGCCCTTGA
AGTGATACTGTTTCTTAGTCACAAATCCCGTCGTCTGCGCTTGGAGGAGC
TTTCTCTCGCAGTGTTTTCACAGCATGGCCCTGTGACATTTACGTCCTCC
ACTATCAAAGATAGCGGCAATGCTATCACCACTGGGCACAAAACCGGAAA
TGACGAGGAAGTAAGACAGTGCGTGCGTTTGCAGGTGACTTTCACTCTGT
CCGCTGCGGCTTTGCTGGACCCTTTGACGTGGGTCGGCGAAGTGACTCTG
TGCTGTGCATGGCGCCGGTTGACCTGGAAGGAGGGGGAGAATGAGGAAGT
GGAGGAGGAAGAGATGGTTTATCCGCCCGGTGCCCAACCATTGGAGCAGC
TGACATTCTGTGCCCGGGAGTTTGACGGCGCAAGTATTAGCAGCGGCATC
AGTAGCAGCAGGTGCACAATCGGCGGTGAAGACCTCAGCTTCTCTTCTTC
CTCCTCCTCTTCCTCCTCCTCCATATCGCCTCTTCTCTGGAGGCTCGAAG
CCACCGTGTTGTCGTCTTGCGCTAATCTATCCATCCCCCTCTCCTGGTCC
TCACGTATTGCCTCGGCCCGTCTTGACCCAATGGAGAGCACATACCACCT
GGCAGCCATTGATCTCCCCACGCTTTGCACCACTCTCCATAATATTTTGA
AGCAGACACACAAGCAAACCTCCTCTCCCTCCTCTTCCTCCTTCTCCTCC
TCCACGTGTTCTCTCGTGCCCTCGGACCTCATCCAACCCGCATCATCCTT
TCTTCGAGGCCTAGCCTGGGCTGTGGCATTGCTGCAAGAGGAGCTGGAGT
TGTTGTGTACGTTGGTGGAAGGCGGGGAGCCCAAGGCCGGGACTATACGG
GACGTGTGGCTAGCCCAGCCGGCCTTGGACATGGCCGTGTACGTGCTGGC
TAATTTATGCTTGTTGAGCCGACTTGATTGA
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protein sequence of NO12G02540.1

>NO12G02540.1-protein ID=NO12G02540.1-protein|Name=NO12G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1027bp
MAACLPHALHSMMLAMDTQGLQRDRLLHVRVLREREAEGQANDASVIVTK
GRFSEEKRRFIERSETFTLPAGSSDPCNIKVLALDQVLNHMSNRLCICFV
VRAETCKNATLALCRLVEGDDADNVIQPEKGGGGSGRRSKRVIWEVLEGG
DEAWSVDTFNFAVVPGPCILAWKPVYESSNKQGPRVHCWYRKKWHVYPLR
TASDATDDIVNISFQGSSTQIDGGFIFRVKSHLSPSTFAWSVLELPPFST
ASSSSSTTFSSSSDHINTANFPSSPYTWLPASALEGCACVCEPLAFNFNN
DQDTNFSGVYMASSTELSFLSSSHKPPEEPVCLAQFPSLSRPARACALLA
RPQPHENAPAAAENEKETTNAEVIEHVVVLFGGDAQDPVGRLMLFARVCF
YNLNKHKHHHRQVKEQQEQGEEKQELHPLREFQGLAGMLRGDFLGYGWDQ
LALLPSSSSTLDGMGEVALTDLVHVWGPAGHCKLEDAPVKLLEDKAAFRA
ADKARKKAAAAAFTSKGGGHENTQVRTTKKKKKKMKKGEKRHLVEERFVA
EEKRDWKDGEESGAAAAAPTEAEGETKERVLGKIRDALRQRLHDEEAEKR
GLAQVEAQKRLLLMESERILTSMAYQDVLPSTSRLEDVGGDGGSGCGGDG
GVGEGEGIVGSTTFAASLRPLLKASDGSDKEQAAFCGQRQAAPLFPIASH
QIVRQEVDADSQRVALEVILFLSHKSRRLRLEELSLAVFSQHGPVTFTSS
TIKDSGNAITTGHKTGNDEEVRQCVRLQVTFTLSAAALLDPLTWVGEVTL
CCAWRRLTWKEGENEEVEEEEMVYPPGAQPLEQLTFCAREFDGASISSGI
SSSRCTIGGEDLSFSSSSSSSSSSISPLLWRLEATVLSSCANLSIPLSWS
SRIASARLDPMESTYHLAAIDLPTLCTTLHNILKQTHKQTSSPSSSSFSS
STCSLVPSDLIQPASSFLRGLAWAVALLQEELELLCTLVEGGEPKAGTIR
DVWLAQPALDMAVYVLANLCLLSRLD*
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Synonyms
Publications