NO12G02450, NO12G02450 (gene) Nannochloropsis oceanica

Overview
NameNO12G02450
Unique NameNO12G02450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1739
Alignment locationchr12:701405..703143 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:701405..703143 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G02450 vs. NCBI_GenBank
Match: EWM25789.1 (hypothetical protein Naga_100021g75, partial [Nannochloropsis gaditana])

HSP 1 Score: 256.1 bits (653), Expect = 1.700e-64
Identity = 124/192 (64.58%), Postives = 147/192 (76.56%), Query Frame = 0 
Query:  113 VPFDSIVERLDKLERRVQADGEEIR------YSLDSLEDDNTSMLEIVSQTVFDYITTRLTPKTDRQCSWSYSQCKCVPTCRCSYQFQLGDYTLSRSCRVNHNTTAVALCDADSHDEGNDDNVLVQAQRALLRGLGQLEEVLAYYAPATSPECDWRWSSLRCEPREDCRFYFKLGDYHVGRSCRLRVAVEAE 299
            VP ++IVERL++LE                 +SLDSL+DDN SMLEIVSQT FDY+TTRLTPKTDR+CSWSYSQ KCVP CRC +QF  GDYTLSR+CR+N N TA+ LCD  S  E +D+N+LV+A+R L+RGLG L+  L  +AP+TSPECDW+WSSLRC P   CRFYFKLGDYH+GRSCRLR  VEAE
Sbjct:  110 VPLETIVERLEELEXXXXXXXXXXXXXXXPGFSLDSLDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNATALGLCD-PSGLEDSDENMLVRARRLLVRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTVVEAE 300
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BLAST of NO12G02450 vs. NCBI_GenBank
Match: CBJ32490.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 107.5 bits (267), Expect = 1.000e-19
Identity = 62/191 (32.46%), Postives = 96/191 (50.26%), Query Frame = 0 
Query:  113 VPFDSIVERLDKLERRV--QADGEEIRYSLD-SLEDDNTSMLEIVSQTVFDYITTRLTPKTDRQCSWSYSQCKCVPTCRCSYQFQLGDYTLSRSCRVN-HNTTAVALCDADSHDEGNDDNVLVQAQRALLR-GLGQLEEVLAYYAPATSPECDWRWS------SLRCEPREDCRFYFKLGDYHVGRSCRLR 293
            +P D + E L  +  R       E  R  L+   + D+ ++LE + + V  ++ TRLTP+TD +C WS+ + +C P C C Y+++ GDY   RSCR+       +A CD    + GND ++L +    + + G         +  P T  +C +  +       L C PR  C F++K GD H GRSCRLR
Sbjct:   55 MPADELAEELVGVFHRTMDSEKRERRRRELERDFDTDDEALLERIGRLVVQWVNTRLTPRTDEECDWSWGRWRCDPQCSCQYKYRFGDYAPGRSCRLRPEGERELATCDP---ERGNDVSLLEKLAAFVGKVGRSTWRFTAEHVVPQTDKDCRFSLAHSLEEKKLVCTPRRHCAFHYKFGDVHPGRSCRLR 242
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BLAST of NO12G02450 vs. NCBI_GenBank
Match: GAX11315.1 (hypothetical protein FisN_15Lh245 [Fistulifera solaris])

HSP 1 Score: 73.2 bits (178), Expect = 2.100e-9
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 0 
Query:  206 VNHNTTAVALCDADSHDEGNDDNVLVQAQRALLRGLGQLEE--VLAYYAPATSPECDWRWSSLRCEPREDCRFYFKLGDYHVGRSCRLR 293
            V+H+ +  +    D   + N   V+V+  R LL   G+  +  +     P T+PEC W W SL CEP  +C F+ K GDYH+GRSCR+R
Sbjct:  167 VHHHRSLKSSDLVDIEPKENPPKVMVEDDRTLLDIFGEAAKQFLTQKVIPETNPECKWDWRSLNCEPICECEFHLKFGDYHLGRSCRVR 255
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BLAST of NO12G02450 vs. NCBI_GenBank
Match: GAX12766.1 (hypothetical protein FisN_15Hh245 [Fistulifera solaris])

HSP 1 Score: 72.4 bits (176), Expect = 3.600e-9
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 0 
Query:  217 DADSHDEGNDD--NVLVQAQRALLRGLGQLEE--VLAYYAPATSPECDWRWSSLRCEPREDCRFYFKLGDYHVGRSCRLR 293
            D   +D+ N+    V+V+  R LL   G+  +  +     P T+PEC W W SL CEP  DC F+ K GDYH+GRSCR+R
Sbjct:  173 DLVDNDKPNESLPKVMVEDDRTLLDIFGEAAKQFLTQKVIPETNPECKWDWRSLNCEPICDCEFHLKFGDYHLGRSCRVR 252
[Close]
BLAST of NO12G02450 vs. NCBI_GenBank
Match: XP_002186264.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65734.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 66.6 bits (161), Expect = 2.000e-7
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 0 
Query:  144 EDDNTSMLEIVSQTVFDYITTRLTPKTDRQCSWSYSQCKCVPTCRCSYQFQLGDYTLSRSCR 206
            E+D+ ++L++  +   +Y+TT++ P TD  C W +   +C P C CS++ Q GDY L RSCR
Sbjct:  135 EEDDRTLLDVFGEVTKEYLTTKVIPDTDSSCRWDWRSTQCEPACACSFEAQWGDYHLGRSCR 196
The following BLAST results are available for this feature:
BLAST of NO12G02450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM25789.11.700e-6464.58hypothetical protein Naga_100021g75, partial [Nann... [more]
CBJ32490.11.000e-1932.46conserved unknown protein [Ectocarpus siliculosus][more]
GAX11315.12.100e-939.33hypothetical protein FisN_15Lh245 [Fistulifera sol... [more]
GAX12766.13.600e-943.75hypothetical protein FisN_15Hh245 [Fistulifera sol... [more]
XP_002186264.12.000e-740.32predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010182NSK010182Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02450.1NO12G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592445gene_5410Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g75gene4729Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02450.1NO12G02450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02450 ID=NO12G02450|Name=NO12G02450|organism=Nannochloropsis oceanica|type=gene|length=1739bp
TGGTGGTGCTTCGTCTGCCTGTCTTGTTGACAGAGATGGTTTGGATGAAT
GAGTACTTTTGAAACGCGCTTGGACAGGCGAATGATAGATCCGTGCTGTC
CCACTGCCCTAAAGGTACAACGCGGGGCAAAAAGGGTGCCGTGGCAATCG
GGCATGCGATTACTGCCCTGGTGGCACAAGGTAGCTGTGTTAAGCAAAGG
CGTCGCTCATACGTCTCCGTCAACGCGGCGGACGTCTCACATTCATCCCC
CTTCTACTGTCAACCACAGTAATTTACACTGCCACCTTCTTTGATTATCC
ACCACTTTCACAAGAGCGCAAGTACCCGTACGGAATTGGGCCAGGTGGCC
ACCAGCAATTCCAGCCAGTATGAGGACGCCCTCTCTTCTTCTCCTCCTCC
CTCTCCTCTCCATGGGAGGGTGCCTCCTCGTCTTGCCTGCGCTTGCAGCC
GCGCAGGAGGTCGACAACATAAACGACGGCGTGGATGCATTCGAGGGGTT
ACCGGTTGAGGGGGAGGAAGCCGTTCCAGTCTCGGCGGGGGACGTAGAAG
TCTCGATTGGCCGTGCGCTGGATGAACTTGACGCGGCTGCCTCGTCGAGG
GGGAAGGAGACACTCAAGCAAGGCCGGGAAAAGATGACCCGGGCCAAGAA
AGCAACCGAAAAAGTTGCTGGCAGTAATGGTGATGGCGGAGTTAGACGGG
GAGAGGTGCCTTTCGATTCGATCGTAGAGCGGCTGGACAAGCTTGAGCGG
CGGGTACAGGCGGATGGCGAGGAGATAAGGTATTCGCTCGATAGCTTAGA
GGATGACAACACGAGTATGCTTGAAATgtacgtttacgcgagagggatgt
ggatggtgggtatatgaatgaggacatggatgcaattgcgagcttgggcg
ctgttgcttttcattcattcacctcccctccttccctccctccaattatc
ccaattcccatctccctcaccccccacacagCGTCTCCCAAACCGTCTTT
GATTACATCACCACCCGTCTCACCCCCAAAACGGACCGGCAATGCTCCTG
GAGCTACAGCCAATGCAAGTGTGTACCCACATGCCGGTGCTCCTACCAGT
TCCAACTGGGCGACTATACCCTTTCTCGCTCTTGCCGGGTCAACCACAAC
ACCACAGCTGTCGCGCTCTGTGACGCGGACTCGCACGACGAGGGCAATGA
TGACAATGTGCTCGTACAGGCCCAACGGGCTCTGCTTCGAGGCCTGGGAC
AGTTGGAAGAAGTGTTGGCTTATTACGCGCCAGCCACTAGCCCCGAATGC
GATTGGCGGTGGTCGTCGTTGAGGTGTGAACCCAGGGAGGACTGTCGGTT
TTATTTTAAGCTGGGTGACTACCATGTGGGGAGGTCGTGTCGATTGCGGG
TGGCGGTGGAGGCAGAGTTGGCGGAGAAGAAACGGGAAAAAGAGGAGAGG
GAGGCAGCGGCCAAGGCAAGGAAGGTTTTGGAGGAGGAAGAGGAGGAAGA
GGAAGAGGACGAGGACGAAGAGGACGAGGACGAGGAGGACGAGGAGAAAG
AGGAGGAAGAAGAGGAGGAGAAAGAGGAGGCCGACGATGAGGAGGAGGAG
GAAGGGGAGGATGGGGAGAGGGAAGAGGGAAATAAAAGCAGTAGTGCAGA
AGAAGAAATGAGAGATGAATTGGACGCTGAGGGTGGACTTGAACAAGGTG
CAGAAGAAGTAGAAGAATAGAAAAGCGTGGCTACGAAAA
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protein sequence of NO12G02450.1

>NO12G02450.1-protein ID=NO12G02450.1-protein|Name=NO12G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MRTPSLLLLLPLLSMGGCLLVLPALAAAQEVDNINDGVDAFEGLPVEGEE
AVPVSAGDVEVSIGRALDELDAAASSRGKETLKQGREKMTRAKKATEKVA
GSNGDGGVRRGEVPFDSIVERLDKLERRVQADGEEIRYSLDSLEDDNTSM
LEIVSQTVFDYITTRLTPKTDRQCSWSYSQCKCVPTCRCSYQFQLGDYTL
SRSCRVNHNTTAVALCDADSHDEGNDDNVLVQAQRALLRGLGQLEEVLAY
YAPATSPECDWRWSSLRCEPREDCRFYFKLGDYHVGRSCRLRVAVEAELA
EKKREKEEREAAAKARKVLEEEEEEEEEDEDEEDEDEEDEEKEEEEEEEK
EEADDEEEEEGEDGEREEGNKSSSAEEEMRDELDAEGGLEQGAEEVEE*
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Synonyms
Publications